Wall clock time and date at job start Tue Mar 31 2020 19:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99891 * 2 1 4 4 C 1.52998 * 109.47265 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47443 * 64.99756 * 4 3 2 6 6 C 1.36936 * 119.99651 * 275.00194 * 5 4 3 7 7 H 1.08003 * 119.99501 * 143.41908 * 6 5 4 8 8 C 1.38807 * 120.00498 * 323.41746 * 6 5 4 9 9 N 1.31622 * 119.99577 * 336.71638 * 8 6 5 10 10 Si 1.86799 * 120.00232 * 156.71320 * 8 6 5 11 11 H 1.48503 * 109.47111 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46974 * 119.99912 * 10 8 6 13 13 H 1.48497 * 109.46956 * 239.99909 * 10 8 6 14 14 S 1.65602 * 119.99954 * 94.99959 * 5 4 3 15 15 O 1.42105 * 106.39944 * 160.80988 * 14 5 4 16 16 O 1.42099 * 106.40368 * 27.88998 * 14 5 4 17 17 C 1.76201 * 107.21685 * 274.34953 * 14 5 4 18 18 C 1.38226 * 119.98695 * 114.47514 * 17 14 5 19 19 C 1.38191 * 120.05253 * 179.97438 * 18 17 14 20 20 C 1.50697 * 119.98995 * 180.28069 * 19 18 17 21 21 C 1.38491 * 120.02294 * 0.02562 * 19 18 17 22 22 F 1.35100 * 120.01614 * 180.02562 * 21 19 18 23 23 C 1.38404 * 119.97542 * 359.97438 * 21 19 18 24 24 C 1.38440 * 119.95098 * 359.97438 * 23 21 19 25 25 F 1.35092 * 120.01371 * 179.97438 * 24 23 21 26 26 H 1.09002 * 109.46718 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47019 * 300.00249 * 1 2 3 28 28 H 1.08996 * 109.47159 * 60.00240 * 1 2 3 29 29 H 1.08997 * 109.47714 * 59.99761 * 3 2 1 30 30 H 1.09004 * 109.47001 * 299.99590 * 3 2 1 31 31 H 1.08999 * 109.47298 * 304.99753 * 4 3 2 32 32 H 1.09007 * 109.47346 * 184.99643 * 4 3 2 33 33 H 0.97000 * 119.99435 * 180.02562 * 9 8 6 34 34 H 1.08000 * 119.97643 * 0.02562 * 18 17 14 35 35 H 1.09006 * 109.47204 * 269.73049 * 20 19 18 36 36 H 1.08998 * 109.46956 * 29.72694 * 20 19 18 37 37 H 1.08996 * 109.47410 * 149.72695 * 20 19 18 38 38 H 1.07999 * 120.02658 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.9988 -0.7997 -1.3698 7 1 3.7366 -1.2656 -2.3083 8 6 4.3593 -1.5837 -0.2826 9 7 5.0979 -1.0740 0.6802 10 14 3.7961 -3.3621 -0.1858 11 1 2.9838 -3.6901 -1.3849 12 1 4.9817 -4.2546 -0.1325 13 1 2.9755 -3.5556 1.0367 14 16 4.4454 1.5130 -2.5263 15 8 5.2169 0.6818 -3.3825 16 8 4.9385 2.7221 -1.9657 17 6 2.9903 1.9382 -3.4244 18 6 2.5726 3.2546 -3.4798 19 6 1.4318 3.5897 -4.1843 20 6 0.9812 5.0262 -4.2491 21 6 0.7055 2.6064 -4.8351 22 9 -0.4094 2.9341 -5.5241 23 6 1.1228 1.2879 -4.7802 24 6 2.2663 0.9536 -4.0751 25 9 2.6745 -0.3330 -4.0204 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8465 0.8899 30 1 1.6886 1.8464 -0.8901 31 1 3.8515 0.5683 0.8409 32 1 3.9785 2.1766 0.0889 33 1 5.3501 -1.6220 1.4398 34 1 3.1386 4.0222 -2.9730 35 1 0.3046 5.2326 -3.4197 36 1 1.8489 5.6825 -4.1819 37 1 0.4643 5.2027 -5.1923 38 1 0.5572 0.5205 -5.2878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414449950.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:26 Heat of formation + Delta-G solvation = -165.812267 kcal Electronic energy + Delta-G solvation = -28860.681349 eV Core-core repulsion = 24467.434951 eV Total energy + Delta-G solvation = -4393.246398 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.22356 -48.84387 -38.91092 -37.39897 -36.04738 -35.23787 -34.65615 -32.67183 -31.51063 -30.97203 -28.80997 -26.80559 -25.84275 -24.23456 -23.52894 -22.17874 -21.58918 -18.56291 -18.24289 -17.53364 -17.37203 -16.63317 -16.44707 -16.05629 -15.50590 -15.36524 -15.30526 -15.07238 -14.56497 -14.43546 -14.38834 -14.24219 -14.06711 -13.53094 -13.39043 -13.22232 -12.57235 -12.28014 -12.10256 -11.96850 -11.83186 -11.59275 -11.55815 -11.22709 -11.05691 -10.98399 -10.86925 -10.77367 -10.40805 -10.28755 -10.09366 -9.99720 -9.29972 -9.01028 -8.97406 -8.66009 -7.69372 -6.24585 -3.84811 0.59639 0.98463 1.41444 3.11833 3.29729 3.36425 3.43029 3.75979 4.13028 4.35548 4.40055 4.46302 4.50802 4.55859 4.74702 4.99875 5.10300 5.21201 5.41420 5.46837 5.53834 5.62395 5.67274 5.71225 5.77675 5.86924 5.90203 5.93886 6.01932 6.03113 6.05977 6.19614 6.37807 6.68115 7.13337 7.38665 7.69505 7.96924 8.48833 9.04329 9.43166 10.78748 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.005622 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.500051 B = 4979.246095 C = 5323.345778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.049 3.951 4 C 0.122 3.878 5 N -0.831 5.831 6 C -0.245 4.245 7 H 0.098 0.902 8 C 0.045 3.955 9 N -0.852 5.852 10 Si 0.921 3.079 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.280 1.280 14 S 2.599 3.401 15 O -0.962 6.962 16 O -1.000 7.000 17 C -0.698 4.698 18 C 0.023 3.977 19 C -0.159 4.159 20 C -0.110 4.110 21 C 0.164 3.836 22 F -0.129 7.129 23 C -0.214 4.214 24 C 0.232 3.768 25 F -0.099 7.099 26 H 0.077 0.923 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.041 0.959 30 H 0.030 0.970 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.267 0.733 34 H 0.158 0.842 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.945 7.580 -4.534 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C -0.030 4.030 4 C -0.006 4.006 5 N -0.661 5.661 6 C -0.385 4.385 7 H 0.115 0.885 8 C -0.163 4.163 9 N -0.493 5.493 10 Si 0.748 3.252 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.206 1.206 14 S 2.697 3.303 15 O -0.952 6.952 16 O -0.989 6.989 17 C -0.779 4.779 18 C 0.004 3.996 19 C -0.161 4.161 20 C -0.166 4.166 21 C 0.144 3.856 22 F -0.107 7.107 23 C -0.235 4.235 24 C 0.211 3.789 25 F -0.077 7.077 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.138 0.862 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.175 0.825 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.954 7.792 -4.794 13.519 hybrid contribution -1.458 -0.756 -0.265 1.664 sum -11.412 7.036 -5.059 14.329 Atomic orbital electron populations 1.22663 0.83906 1.01773 0.98580 1.88229 1.16778 1.26966 1.94877 1.23172 0.96953 0.84844 0.98039 1.21421 0.89087 0.98692 0.91378 1.52602 1.76324 1.13568 1.23599 1.19331 1.40126 0.78699 1.00331 0.88491 1.25361 0.94407 0.99332 0.97212 1.69997 1.31212 1.37328 1.10719 0.85967 0.78422 0.82197 0.78609 1.19128 1.21185 1.20578 1.07124 0.73632 0.73665 0.75863 1.93452 1.65854 1.67097 1.68755 1.93375 1.77623 1.50569 1.77343 1.31768 1.27150 0.99915 1.19102 1.20639 0.92731 0.94204 0.92002 1.20016 0.97498 0.96497 1.02120 1.20700 1.02269 0.90699 1.02972 1.17248 0.83496 0.92479 0.92365 1.91505 1.49320 1.93143 1.76748 1.21034 0.99505 0.96449 1.06467 1.16634 0.91078 0.78738 0.92404 1.91682 1.89136 1.33428 1.93469 0.90438 0.95251 0.95273 0.94074 0.95165 0.86198 0.90461 0.92282 0.82483 0.90639 0.90511 0.91166 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.35 -6.96 9.94 -35.23 -0.35 -7.31 16 3 C 0.05 0.90 6.28 37.16 0.23 1.14 16 4 C 0.12 2.64 5.76 -4.04 -0.02 2.61 16 5 N -0.83 -19.89 2.82 -59.91 -0.17 -20.06 16 6 C -0.24 -6.31 7.88 -15.06 -0.12 -6.42 16 7 H 0.10 2.51 6.13 -52.48 -0.32 2.19 16 8 C 0.05 1.17 4.96 -17.43 -0.09 1.08 16 9 N -0.85 -22.47 11.46 55.49 0.64 -21.83 16 10 Si 0.92 20.60 29.61 -169.99 -5.03 15.56 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 S 2.60 59.89 5.31 -107.50 -0.57 59.32 16 15 O -0.96 -25.27 16.55 -57.17 -0.95 -26.22 16 16 O -1.00 -23.41 15.61 -57.17 -0.89 -24.30 16 17 C -0.70 -13.15 5.70 -39.51 -0.23 -13.37 16 18 C 0.02 0.36 9.20 -39.60 -0.36 0.00 16 19 C -0.16 -2.13 5.89 -104.55 -0.62 -2.75 16 20 C -0.11 -1.07 9.83 36.00 0.35 -0.72 16 21 C 0.16 2.26 7.24 -39.43 -0.29 1.97 16 22 F -0.13 -1.63 16.48 2.25 0.04 -1.59 16 23 C -0.21 -3.19 10.01 -39.45 -0.39 -3.58 16 24 C 0.23 4.23 7.21 -39.43 -0.28 3.95 16 25 F -0.10 -2.02 14.30 2.25 0.03 -1.99 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.52 7.92 -51.93 -0.41 0.11 16 31 H 0.12 2.86 5.50 -51.93 -0.29 2.58 16 32 H 0.08 1.57 6.97 -51.93 -0.36 1.21 16 33 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.16 2.23 7.33 -52.49 -0.38 1.84 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 37 H 0.07 0.63 7.64 -51.93 -0.40 0.23 16 38 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -30.81 341.02 -7.07 -37.87 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.25 Total: -0.04 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -0.70 Total: -14.56 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.47 Total: -41.89 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -2.19 Total: -57.83 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.07 Total: -3.58 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.56 kcal Atomic # 16 Polarization: 59.89 SS G_CDS: -0.57 Total: 59.32 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.81 -7.07 -37.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414449950.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.937 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds