Wall clock time and date at job start Tue Mar 31 2020 19:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99891 * 2 1 4 4 C 1.52998 * 109.47265 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47443 * 64.99756 * 4 3 2 6 6 C 1.36936 * 119.99651 * 275.00194 * 5 4 3 7 7 H 1.08003 * 119.99501 * 143.41908 * 6 5 4 8 8 C 1.38807 * 120.00498 * 323.41746 * 6 5 4 9 9 N 1.31622 * 119.99577 * 336.71638 * 8 6 5 10 10 Si 1.86799 * 120.00232 * 156.71320 * 8 6 5 11 11 H 1.48503 * 109.47111 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46974 * 119.99912 * 10 8 6 13 13 H 1.48497 * 109.46956 * 239.99909 * 10 8 6 14 14 S 1.65602 * 119.99954 * 94.99959 * 5 4 3 15 15 O 1.42105 * 106.39944 * 160.80988 * 14 5 4 16 16 O 1.42099 * 106.40368 * 27.88998 * 14 5 4 17 17 C 1.76201 * 107.21685 * 274.34953 * 14 5 4 18 18 C 1.38226 * 119.98695 * 114.47514 * 17 14 5 19 19 C 1.38191 * 120.05253 * 179.97438 * 18 17 14 20 20 C 1.50697 * 119.98995 * 180.28069 * 19 18 17 21 21 C 1.38491 * 120.02294 * 0.02562 * 19 18 17 22 22 F 1.35100 * 120.01614 * 180.02562 * 21 19 18 23 23 C 1.38404 * 119.97542 * 359.97438 * 21 19 18 24 24 C 1.38440 * 119.95098 * 359.97438 * 23 21 19 25 25 F 1.35092 * 120.01371 * 179.97438 * 24 23 21 26 26 H 1.09002 * 109.46718 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47019 * 300.00249 * 1 2 3 28 28 H 1.08996 * 109.47159 * 60.00240 * 1 2 3 29 29 H 1.08997 * 109.47714 * 59.99761 * 3 2 1 30 30 H 1.09004 * 109.47001 * 299.99590 * 3 2 1 31 31 H 1.08999 * 109.47298 * 304.99753 * 4 3 2 32 32 H 1.09007 * 109.47346 * 184.99643 * 4 3 2 33 33 H 0.97000 * 119.99435 * 180.02562 * 9 8 6 34 34 H 1.08000 * 119.97643 * 0.02562 * 18 17 14 35 35 H 1.09006 * 109.47204 * 269.73049 * 20 19 18 36 36 H 1.08998 * 109.46956 * 29.72694 * 20 19 18 37 37 H 1.08996 * 109.47410 * 149.72695 * 20 19 18 38 38 H 1.07999 * 120.02658 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 3.9988 -0.7997 -1.3698 7 1 3.7366 -1.2656 -2.3083 8 6 4.3593 -1.5837 -0.2826 9 7 5.0979 -1.0740 0.6802 10 14 3.7961 -3.3621 -0.1858 11 1 2.9838 -3.6901 -1.3849 12 1 4.9817 -4.2546 -0.1325 13 1 2.9755 -3.5556 1.0367 14 16 4.4454 1.5130 -2.5263 15 8 5.2169 0.6818 -3.3825 16 8 4.9385 2.7221 -1.9657 17 6 2.9903 1.9382 -3.4244 18 6 2.5726 3.2546 -3.4798 19 6 1.4318 3.5897 -4.1843 20 6 0.9812 5.0262 -4.2491 21 6 0.7055 2.6064 -4.8351 22 9 -0.4094 2.9341 -5.5241 23 6 1.1228 1.2879 -4.7802 24 6 2.2663 0.9536 -4.0751 25 9 2.6745 -0.3330 -4.0204 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8465 0.8899 30 1 1.6886 1.8464 -0.8901 31 1 3.8515 0.5683 0.8409 32 1 3.9785 2.1766 0.0889 33 1 5.3501 -1.6220 1.4398 34 1 3.1386 4.0222 -2.9730 35 1 0.3046 5.2326 -3.4197 36 1 1.8489 5.6825 -4.1819 37 1 0.4643 5.2027 -5.1923 38 1 0.5572 0.5205 -5.2878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414449950.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:24 Heat of formation + Delta-G solvation = -186.557568 kcal Electronic energy + Delta-G solvation = -28861.580933 eV Core-core repulsion = 24467.434951 eV Total energy + Delta-G solvation = -4394.145982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -50.30787 -50.28676 -40.13543 -38.89163 -37.97683 -36.95373 -36.61234 -33.75504 -33.35287 -32.25537 -30.41576 -27.82331 -27.20647 -26.01009 -24.79938 -23.43167 -23.18516 -20.35808 -19.55502 -19.14813 -18.78678 -18.23970 -18.10872 -17.27161 -16.92222 -16.81965 -16.63621 -16.49404 -16.15201 -16.11409 -15.81711 -15.55191 -15.51029 -15.02758 -14.42810 -14.37135 -13.95957 -13.63971 -13.54422 -13.48393 -13.14962 -13.03621 -12.99755 -12.86672 -12.75555 -12.66265 -12.62524 -12.37443 -12.15627 -11.93096 -11.82272 -11.65786 -10.88745 -10.51075 -10.32965 -9.87438 -9.54255 -8.13444 -5.81051 -0.71043 -0.33970 -0.22285 1.49924 1.52442 1.64189 1.87315 2.36347 2.54511 2.64691 2.86436 3.12049 3.15251 3.23440 3.25611 3.50470 3.72170 4.00973 4.18064 4.33150 4.35342 4.40081 4.58227 4.59693 4.61425 4.62678 4.65787 4.68879 4.73663 4.75443 4.90172 5.00684 5.11670 5.38146 5.51480 5.57090 5.90865 6.56554 6.61914 7.15076 7.52686 8.90789 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.005622 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.500051 B = 4979.246095 C = 5323.345778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.388 6.388 3 C 0.055 3.945 4 C 0.113 3.887 5 N -0.840 5.840 6 C -0.272 4.272 7 H 0.085 0.915 8 C 0.010 3.990 9 N -0.888 5.888 10 Si 0.967 3.033 11 H -0.266 1.266 12 H -0.286 1.286 13 H -0.275 1.275 14 S 2.625 3.375 15 O -1.003 7.003 16 O -1.007 7.007 17 C -0.713 4.713 18 C 0.021 3.979 19 C -0.141 4.141 20 C -0.113 4.113 21 C 0.176 3.824 22 F -0.115 7.115 23 C -0.204 4.204 24 C 0.205 3.795 25 F -0.121 7.121 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.267 0.733 34 H 0.171 0.829 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.796 9.702 -5.578 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.306 6.306 3 C -0.023 4.023 4 C -0.014 4.014 5 N -0.671 5.671 6 C -0.409 4.409 7 H 0.103 0.897 8 C -0.195 4.195 9 N -0.529 5.529 10 Si 0.793 3.207 11 H -0.190 1.190 12 H -0.213 1.213 13 H -0.200 1.200 14 S 2.726 3.274 15 O -0.993 6.993 16 O -0.997 6.997 17 C -0.800 4.800 18 C 0.002 3.998 19 C -0.143 4.143 20 C -0.169 4.169 21 C 0.156 3.844 22 F -0.093 7.093 23 C -0.224 4.224 24 C 0.184 3.816 25 F -0.099 7.099 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.189 0.811 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.775 9.848 -5.766 17.130 hybrid contribution -0.764 -1.148 -0.127 1.385 sum -13.540 8.699 -5.893 17.138 Atomic orbital electron populations 1.22849 0.81526 1.02828 1.00097 1.88170 1.19482 1.27756 1.95214 1.23047 0.94479 0.84931 0.99885 1.21497 0.91810 0.98131 0.89997 1.52521 1.77219 1.13355 1.24055 1.19223 1.41782 0.79744 1.00123 0.89696 1.25892 0.94484 1.02131 0.96977 1.70074 1.32845 1.38468 1.11518 0.85278 0.77953 0.78951 0.78563 1.18989 1.21272 1.20035 1.04933 0.74463 0.72877 0.75163 1.93417 1.68329 1.68323 1.69219 1.93371 1.78747 1.49704 1.77869 1.31080 1.26175 1.01913 1.20830 1.20848 0.93680 0.92866 0.92444 1.20370 0.95760 0.98467 0.99704 1.20885 1.03500 0.88018 1.04488 1.17261 0.83475 0.92034 0.91588 1.91553 1.48524 1.92944 1.76254 1.21214 0.98128 0.97821 1.05252 1.16905 0.92642 0.77870 0.94171 1.91630 1.89606 1.34813 1.93870 0.89776 0.93068 0.94230 0.91145 0.94057 0.88496 0.89842 0.92357 0.81127 0.88741 0.88925 0.89773 0.80618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.91 16 2 O -0.39 -15.15 9.94 -148.98 -1.48 -16.63 16 3 C 0.06 1.98 6.28 71.98 0.45 2.43 16 4 C 0.11 4.96 5.76 86.38 0.50 5.45 16 5 N -0.84 -41.31 2.82 -343.45 -0.97 -42.27 16 6 C -0.27 -14.57 7.88 84.03 0.66 -13.90 16 7 H 0.09 4.64 6.13 -2.91 -0.02 4.62 16 8 C 0.01 0.52 4.96 84.86 0.42 0.94 16 9 N -0.89 -48.82 11.46 21.65 0.25 -48.57 16 10 Si 0.97 43.52 29.61 68.60 2.03 45.55 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 S 2.62 122.86 5.31 -56.49 -0.30 122.56 16 15 O -1.00 -54.54 16.55 -128.00 -2.12 -56.66 16 16 O -1.01 -47.17 15.61 -128.00 -2.00 -49.17 16 17 C -0.71 -26.18 5.70 22.32 0.13 -26.05 16 18 C 0.02 0.59 9.20 22.26 0.20 0.79 16 19 C -0.14 -3.18 5.89 -19.82 -0.12 -3.30 16 20 C -0.11 -1.61 9.83 71.23 0.70 -0.91 16 21 C 0.18 4.14 7.24 22.37 0.16 4.30 16 22 F -0.11 -2.34 16.48 44.97 0.74 -1.60 16 23 C -0.20 -5.52 10.01 22.36 0.22 -5.30 16 24 C 0.21 7.31 7.21 22.37 0.16 7.47 16 25 F -0.12 -5.04 14.30 44.97 0.64 -4.40 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.04 1.36 7.92 -2.38 -0.02 1.34 16 31 H 0.10 4.80 5.50 -2.39 -0.01 4.79 16 32 H 0.08 3.43 6.97 -2.38 -0.02 3.42 16 33 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 34 H 0.17 4.35 7.33 -2.91 -0.02 4.33 16 35 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.09 1.10 8.08 -2.39 -0.02 1.08 16 37 H 0.08 1.03 7.64 -2.39 -0.02 1.02 16 38 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -69.35 341.02 2.65 -66.70 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.10 Total: 10.66 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 4.74 Total: -26.17 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -0.72 Total: -90.84 kcal Atomic # 8 Polarization: -116.86 SS G_CDS: -5.60 Total: -122.46 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 1.38 Total: -6.00 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 122.86 SS G_CDS: -0.30 Total: 122.56 kcal Total: -69.35 2.65 -66.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414449950.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.854 kcal (2) G-P(sol) polarization free energy of solvation -69.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds