Wall clock time and date at job start Tue Mar 31 2020 18:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99764 * 2 1 4 4 O 1.20824 * 120.00239 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99879 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.47059 * 180.02562 * 5 3 2 7 7 C 1.36853 * 119.99787 * 264.45432 * 6 5 3 8 8 H 1.08007 * 119.99206 * 131.58169 * 7 6 5 9 9 C 1.39001 * 120.00493 * 311.58707 * 7 6 5 10 10 N 1.31397 * 120.00106 * 170.38247 * 9 7 6 11 11 Si 1.86805 * 119.99631 * 350.38164 * 9 7 6 12 12 H 1.48499 * 109.47018 * 91.65029 * 11 9 7 13 13 H 1.48501 * 109.46811 * 211.64874 * 11 9 7 14 14 H 1.48497 * 109.47176 * 331.64996 * 11 9 7 15 15 C 1.34777 * 119.99968 * 84.45841 * 6 5 3 16 16 O 1.21777 * 119.99914 * 3.65814 * 15 6 5 17 17 C 1.46288 * 120.00034 * 183.65604 * 15 6 5 18 18 C 1.36800 * 125.18182 * 173.47250 * 17 15 6 19 19 C 1.36754 * 114.70107 * 179.97438 * 18 17 15 20 20 C 1.36523 * 114.79107 * 0.02562 * 19 18 17 21 21 C 1.47763 * 125.14256 * 179.97438 * 20 19 18 22 22 C 1.41085 * 126.06721 * 179.71691 * 21 20 19 23 23 C 1.35006 * 107.83860 * 179.82622 * 22 21 20 24 24 N 1.35094 * 108.04377 * 0.43119 * 23 22 21 25 25 H 0.96998 * 125.90861 * 179.69705 * 24 23 22 26 26 N 1.31859 * 126.07494 * 0.02562 * 21 20 19 27 27 S 1.75835 * 109.71036 * 359.77016 * 20 19 18 28 28 H 1.08998 * 109.46856 * 299.99224 * 1 2 3 29 29 H 1.09001 * 109.47567 * 59.99400 * 1 2 3 30 30 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47058 * 60.00793 * 5 3 2 32 32 H 1.09003 * 109.47088 * 300.00221 * 5 3 2 33 33 H 0.97005 * 119.99892 * 179.97438 * 10 9 7 34 34 H 1.07996 * 122.64240 * 359.97438 * 18 17 15 35 35 H 1.08006 * 122.60590 * 180.02562 * 19 18 17 36 36 H 1.07997 * 126.08380 * 359.97438 * 22 21 20 37 37 H 1.08003 * 125.97544 * 180.15772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.2850 3.3043 -1.1792 8 1 3.8605 4.2721 -1.4025 9 6 5.1391 2.6931 -2.0898 10 7 5.2830 3.1958 -3.2952 11 14 6.0823 1.1570 -1.5996 12 1 5.2922 -0.0464 -1.9641 13 1 7.3852 1.1280 -2.3114 14 1 6.3192 1.1682 -0.1337 15 6 4.0651 3.3573 1.1623 16 8 3.8601 2.7843 2.2171 17 6 4.4019 4.7808 1.1566 18 6 4.3917 5.5976 2.2539 19 6 4.7446 6.8950 2.0039 20 6 5.0490 7.1645 0.7007 21 6 5.4571 8.4850 0.1781 22 6 5.7812 8.7839 -1.1621 23 6 6.0966 10.0949 -1.2288 24 7 5.9902 10.6147 0.0136 25 1 6.1625 11.5365 0.2613 26 7 5.5886 9.5919 0.8824 27 16 4.8877 5.7012 -0.2608 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9556 0.7811 -0.8909 32 1 3.9564 0.7806 0.8891 33 1 5.8794 2.7695 -3.9304 34 1 4.1260 5.2456 3.2397 35 1 4.7797 7.6480 2.7775 36 1 5.7755 8.0883 -1.9882 37 1 6.3877 10.6330 -2.1189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431818552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:32 Heat of formation + Delta-G solvation = 6.621729 kcal Electronic energy + Delta-G solvation = -25974.810264 eV Core-core repulsion = 22039.730352 eV Total energy + Delta-G solvation = -3935.079912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83108 -40.10663 -38.78840 -36.67619 -35.87686 -34.97202 -32.36783 -32.02942 -29.84110 -29.61694 -28.04780 -26.59721 -25.44726 -24.08310 -21.72370 -21.07460 -20.43096 -19.87582 -18.64909 -18.12253 -17.43574 -17.19614 -16.83388 -15.99689 -15.69202 -15.38814 -14.89505 -14.55790 -14.52039 -14.14766 -13.77391 -13.43736 -13.34143 -13.22768 -13.00254 -12.80318 -12.34490 -11.98300 -11.96729 -11.89382 -11.67371 -11.61680 -11.20587 -10.78565 -10.59257 -10.42629 -10.40189 -10.05242 -9.79639 -9.71920 -9.26052 -9.03618 -8.69649 -8.12363 -7.69545 -7.50491 -6.78845 -4.61215 0.98628 2.07515 2.35158 2.71150 2.77287 2.82822 2.92717 3.03166 3.05685 3.08088 3.11069 3.61514 3.83258 4.09087 4.16595 4.66648 4.80706 4.99534 5.31123 5.37541 5.40283 5.47460 5.55584 5.73343 5.73936 5.83370 5.89443 6.04240 6.13680 6.20930 6.61610 6.72482 6.76960 6.97710 6.99851 7.08485 7.35015 7.70076 7.78903 7.81605 8.30115 8.55963 8.92337 9.29457 10.24744 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.003966 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.042063 B = 7057.486307 C = 7962.376711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.449 3.551 4 O -0.489 6.489 5 C 0.111 3.889 6 N -0.452 5.452 7 C -0.350 4.350 8 H 0.119 0.881 9 C 0.082 3.918 10 N -0.832 5.832 11 Si 0.870 3.130 12 H -0.263 1.263 13 H -0.275 1.275 14 H -0.250 1.250 15 C 0.570 3.430 16 O -0.576 6.576 17 C -0.226 4.226 18 C -0.095 4.095 19 C -0.122 4.122 20 C -0.212 4.212 21 C 0.163 3.837 22 C -0.258 4.258 23 C 0.054 3.946 24 N -0.484 5.484 25 H 0.436 0.564 26 N -0.291 5.291 27 S 0.335 5.665 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.285 0.715 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.153 0.847 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 4.268 0.252 4.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.290 3.710 4 O -0.374 6.374 5 C -0.014 4.014 6 N -0.174 5.174 7 C -0.484 4.484 8 H 0.136 0.864 9 C -0.132 4.132 10 N -0.463 5.463 11 Si 0.695 3.305 12 H -0.189 1.189 13 H -0.201 1.201 14 H -0.174 1.174 15 C 0.362 3.638 16 O -0.461 6.461 17 C -0.349 4.349 18 C -0.128 4.128 19 C -0.155 4.155 20 C -0.332 4.332 21 C -0.002 4.002 22 C -0.288 4.288 23 C -0.092 4.092 24 N -0.193 5.193 25 H 0.279 0.721 26 N -0.116 5.116 27 S 0.611 5.389 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.171 0.829 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.558 4.578 0.131 4.614 hybrid contribution 0.108 -0.098 0.684 0.699 sum 0.666 4.481 0.815 4.603 Atomic orbital electron populations 1.23149 0.77389 1.02902 1.02319 1.86514 1.22767 1.34339 1.84882 1.24666 0.92781 0.81275 0.72320 1.90632 1.66586 1.36262 1.43904 1.21363 0.86931 0.87944 1.05193 1.43139 1.59101 1.08568 1.06579 1.18983 1.29255 1.05047 0.95092 0.86432 1.25543 0.94752 0.98285 0.94573 1.69640 1.33502 1.39587 1.03608 0.86940 0.80284 0.82096 0.81142 1.18947 1.20095 1.17385 1.17153 0.78318 0.85142 0.83218 1.90701 1.54826 1.69431 1.31130 1.24406 1.13768 0.98065 0.98660 1.20203 1.01620 0.92167 0.98843 1.20132 1.03545 0.96389 0.95450 1.24348 1.09857 0.98319 1.00633 1.19888 0.97536 0.90999 0.91785 1.21688 1.13411 0.96181 0.97484 1.22445 1.01882 0.95143 0.89765 1.46287 1.55805 1.11363 1.05800 0.72051 1.77644 1.22727 0.95678 1.15544 1.85954 1.57212 0.91627 1.04142 0.92263 0.92167 0.88662 0.87193 0.86843 0.90470 0.84367 0.85388 0.82927 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.51 10.57 -39.25 -0.41 -6.92 16 3 C 0.45 9.48 7.99 36.01 0.29 9.76 16 4 O -0.49 -11.69 16.05 -18.75 -0.30 -11.99 16 5 C 0.11 2.34 4.44 -5.19 -0.02 2.32 16 6 N -0.45 -10.69 1.58 -117.71 -0.19 -10.88 16 7 C -0.35 -8.46 7.38 -15.03 -0.11 -8.57 16 8 H 0.12 3.00 5.43 -30.00 -0.16 2.83 16 9 C 0.08 1.92 5.41 -17.45 -0.09 1.83 16 10 N -0.83 -20.11 13.96 55.50 0.77 -19.33 16 11 Si 0.87 17.90 24.87 -169.99 -4.23 13.67 16 12 H -0.26 -5.07 6.75 56.52 0.38 -4.69 16 13 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 14 H -0.25 -5.23 7.09 56.52 0.40 -4.83 16 15 C 0.57 13.83 7.40 -13.02 -0.10 13.73 16 16 O -0.58 -14.68 16.47 5.12 0.08 -14.60 16 17 C -0.23 -5.03 6.29 -36.87 -0.23 -5.27 16 18 C -0.09 -1.90 9.88 -40.64 -0.40 -2.30 16 19 C -0.12 -2.29 10.07 -40.74 -0.41 -2.70 16 20 C -0.21 -4.05 6.48 -36.31 -0.24 -4.29 16 21 C 0.16 2.87 7.08 -82.88 -0.59 2.28 16 22 C -0.26 -3.87 10.57 -39.65 -0.42 -4.29 16 23 C 0.05 0.61 11.96 -17.26 -0.21 0.40 16 24 N -0.48 -5.78 7.35 30.41 0.22 -5.55 16 25 H 0.44 3.43 8.96 -182.62 -1.64 1.79 16 26 N -0.29 -4.80 12.69 33.36 0.42 -4.38 16 27 S 0.34 6.86 18.27 -107.50 -1.96 4.90 16 28 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.11 2.21 4.05 -51.93 -0.21 2.00 16 32 H 0.11 2.23 7.54 -51.93 -0.39 1.84 16 33 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 34 H 0.14 2.62 8.04 -52.49 -0.42 2.20 16 35 H 0.13 2.19 8.06 -52.48 -0.42 1.76 16 36 H 0.15 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.18 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 339.17 15.07 5.11 5.11 Total: -1.00 -31.44 339.17 -6.45 -37.90 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.52 Total: 7.59 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.46 Total: 4.48 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 1.24 Total: -40.14 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.63 Total: -33.51 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -4.23 Total: 13.67 kcal Atomic # 16 Polarization: 6.86 SS G_CDS: -1.96 Total: 4.90 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.44 -6.45 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431818552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.517 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds