Wall clock time and date at job start Tue Mar 31 2020 18:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 116.99764 * 2 1 4 4 O 1.20824 * 120.00239 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99879 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.47059 * 180.02562 * 5 3 2 7 7 C 1.36853 * 119.99787 * 264.45432 * 6 5 3 8 8 H 1.08007 * 119.99206 * 131.58169 * 7 6 5 9 9 C 1.39001 * 120.00493 * 311.58707 * 7 6 5 10 10 N 1.31397 * 120.00106 * 170.38247 * 9 7 6 11 11 Si 1.86805 * 119.99631 * 350.38164 * 9 7 6 12 12 H 1.48499 * 109.47018 * 91.65029 * 11 9 7 13 13 H 1.48501 * 109.46811 * 211.64874 * 11 9 7 14 14 H 1.48497 * 109.47176 * 331.64996 * 11 9 7 15 15 C 1.34777 * 119.99968 * 84.45841 * 6 5 3 16 16 O 1.21777 * 119.99914 * 3.65814 * 15 6 5 17 17 C 1.46288 * 120.00034 * 183.65604 * 15 6 5 18 18 C 1.36800 * 125.18182 * 173.47250 * 17 15 6 19 19 C 1.36754 * 114.70107 * 179.97438 * 18 17 15 20 20 C 1.36523 * 114.79107 * 0.02562 * 19 18 17 21 21 C 1.47763 * 125.14256 * 179.97438 * 20 19 18 22 22 C 1.41085 * 126.06721 * 179.71691 * 21 20 19 23 23 C 1.35006 * 107.83860 * 179.82622 * 22 21 20 24 24 N 1.35094 * 108.04377 * 0.43119 * 23 22 21 25 25 H 0.96998 * 125.90861 * 179.69705 * 24 23 22 26 26 N 1.31859 * 126.07494 * 0.02562 * 21 20 19 27 27 S 1.75835 * 109.71036 * 359.77016 * 20 19 18 28 28 H 1.08998 * 109.46856 * 299.99224 * 1 2 3 29 29 H 1.09001 * 109.47567 * 59.99400 * 1 2 3 30 30 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47058 * 60.00793 * 5 3 2 32 32 H 1.09003 * 109.47088 * 300.00221 * 5 3 2 33 33 H 0.97005 * 119.99892 * 179.97438 * 10 9 7 34 34 H 1.07996 * 122.64240 * 359.97438 * 18 17 15 35 35 H 1.08006 * 122.60590 * 180.02562 * 19 18 17 36 36 H 1.07997 * 126.08380 * 359.97438 * 22 21 20 37 37 H 1.08003 * 125.97544 * 180.15772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6798 0.0002 7 6 4.2850 3.3043 -1.1792 8 1 3.8605 4.2721 -1.4025 9 6 5.1391 2.6931 -2.0898 10 7 5.2830 3.1958 -3.2952 11 14 6.0823 1.1570 -1.5996 12 1 5.2922 -0.0464 -1.9641 13 1 7.3852 1.1280 -2.3114 14 1 6.3192 1.1682 -0.1337 15 6 4.0651 3.3573 1.1623 16 8 3.8601 2.7843 2.2171 17 6 4.4019 4.7808 1.1566 18 6 4.3917 5.5976 2.2539 19 6 4.7446 6.8950 2.0039 20 6 5.0490 7.1645 0.7007 21 6 5.4571 8.4850 0.1781 22 6 5.7812 8.7839 -1.1621 23 6 6.0966 10.0949 -1.2288 24 7 5.9902 10.6147 0.0136 25 1 6.1625 11.5365 0.2613 26 7 5.5886 9.5919 0.8824 27 16 4.8877 5.7012 -0.2608 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9556 0.7811 -0.8909 32 1 3.9564 0.7806 0.8891 33 1 5.8794 2.7695 -3.9304 34 1 4.1260 5.2456 3.2397 35 1 4.7797 7.6480 2.7775 36 1 5.7755 8.0883 -1.9882 37 1 6.3877 10.6330 -2.1189 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431818552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:31 Heat of formation + Delta-G solvation = -14.063107 kcal Electronic energy + Delta-G solvation = -25975.707226 eV Core-core repulsion = 22039.730352 eV Total energy + Delta-G solvation = -3935.976874 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94941 -41.75352 -40.49874 -38.23977 -37.47844 -36.76485 -34.16643 -33.30732 -31.19361 -30.93460 -29.48145 -27.94977 -27.19861 -25.63876 -23.09788 -22.46915 -21.79548 -21.49735 -20.33266 -19.24461 -19.04716 -18.70296 -18.43598 -17.51877 -17.27167 -17.05808 -16.54296 -16.15653 -15.91310 -15.60090 -15.36446 -14.76507 -14.66338 -14.47448 -14.45655 -14.40456 -13.97798 -13.57690 -13.48262 -13.35778 -13.19501 -12.99074 -12.85511 -12.44147 -12.06974 -11.83951 -11.81759 -11.72546 -11.43856 -11.00915 -10.96473 -10.82208 -9.92257 -9.79300 -9.28674 -9.01648 -8.56573 -6.45092 -0.56699 0.78924 0.91160 1.12248 1.18945 1.31169 1.36289 1.40083 1.46762 1.60234 2.06803 2.14437 2.17883 2.38816 2.46742 2.88990 3.63876 3.84332 3.91074 3.97420 4.07490 4.23743 4.31394 4.31644 4.38369 4.52586 4.65596 4.69972 4.83515 4.92168 5.17341 5.20115 5.29154 5.32493 5.53973 5.59701 5.90633 5.97444 6.46333 6.66565 6.70196 6.74857 7.10325 7.48751 8.49327 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.003966 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.042063 B = 7057.486307 C = 7962.376711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.453 3.547 4 O -0.526 6.526 5 C 0.102 3.898 6 N -0.457 5.457 7 C -0.361 4.361 8 H 0.099 0.901 9 C 0.055 3.945 10 N -0.861 5.861 11 Si 0.909 3.091 12 H -0.238 1.238 13 H -0.269 1.269 14 H -0.258 1.258 15 C 0.561 3.439 16 O -0.601 6.601 17 C -0.268 4.268 18 C -0.081 4.081 19 C -0.131 4.131 20 C -0.194 4.194 21 C 0.130 3.870 22 C -0.291 4.291 23 C 0.089 3.911 24 N -0.463 5.463 25 H 0.456 0.544 26 N -0.315 5.315 27 S 0.325 5.675 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.141 0.859 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.291 0.709 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.275 5.093 -0.233 5.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.295 3.705 4 O -0.414 6.414 5 C -0.023 4.023 6 N -0.178 5.178 7 C -0.494 4.494 8 H 0.115 0.885 9 C -0.156 4.156 10 N -0.493 5.493 11 Si 0.731 3.269 12 H -0.163 1.163 13 H -0.194 1.194 14 H -0.182 1.182 15 C 0.353 3.647 16 O -0.488 6.488 17 C -0.390 4.390 18 C -0.116 4.116 19 C -0.163 4.163 20 C -0.314 4.314 21 C -0.034 4.034 22 C -0.321 4.321 23 C -0.059 4.059 24 N -0.174 5.174 25 H 0.304 0.696 26 N -0.141 5.141 27 S 0.599 5.401 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.159 0.841 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.173 5.366 -0.368 5.505 hybrid contribution -0.121 -0.122 0.823 0.841 sum 1.052 5.243 0.455 5.367 Atomic orbital electron populations 1.23565 0.74822 1.05905 1.02209 1.86486 1.25144 1.32157 1.84030 1.24561 0.92791 0.81670 0.71484 1.90615 1.67311 1.37631 1.45822 1.21520 0.87515 0.86935 1.06287 1.43181 1.59037 1.09387 1.06160 1.18892 1.29944 1.05161 0.95360 0.88471 1.25987 0.94938 1.00443 0.94239 1.69683 1.34308 1.40939 1.04346 0.86337 0.79809 0.80367 0.80368 1.16271 1.19431 1.18203 1.17487 0.78088 0.85981 0.83153 1.90650 1.56284 1.70177 1.31699 1.24413 1.16721 0.97875 0.99987 1.20398 1.00065 0.92418 0.98670 1.20269 1.03867 0.96181 0.95938 1.24454 1.07849 0.98807 1.00245 1.19879 0.99651 0.90647 0.93258 1.21869 1.15537 0.98168 0.96497 1.23138 0.98204 0.93831 0.90681 1.46345 1.53797 1.11643 1.05624 0.69622 1.77536 1.23435 0.96215 1.16959 1.85839 1.57779 0.92298 1.04155 0.92488 0.92285 0.84059 0.86080 0.85581 0.89842 0.83620 0.83496 0.83260 0.75284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.36 -12.40 10.57 -51.38 -0.54 -12.94 16 3 C 0.45 19.21 7.99 71.24 0.57 19.78 16 4 O -0.53 -25.75 16.05 21.97 0.35 -25.40 16 5 C 0.10 4.33 4.44 85.63 0.38 4.71 16 6 N -0.46 -22.16 1.58 -644.52 -1.02 -23.17 16 7 C -0.36 -17.99 7.38 84.09 0.62 -17.37 16 8 H 0.10 5.22 5.43 -17.21 -0.09 5.12 16 9 C 0.05 2.61 5.41 84.94 0.46 3.07 16 10 N -0.86 -42.13 13.96 21.67 0.30 -41.83 16 11 Si 0.91 36.18 24.87 68.60 1.71 37.88 16 12 H -0.24 -8.47 6.75 99.48 0.67 -7.80 16 13 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 14 H -0.26 -10.57 7.09 99.48 0.71 -9.87 16 15 C 0.56 28.12 7.40 86.34 0.64 28.76 16 16 O -0.60 -31.53 16.47 -4.60 -0.08 -31.61 16 17 C -0.27 -12.36 6.29 24.03 0.15 -12.21 16 18 C -0.08 -3.33 9.88 21.58 0.21 -3.12 16 19 C -0.13 -4.92 10.07 21.52 0.22 -4.70 16 20 C -0.19 -7.47 6.48 24.39 0.16 -7.31 16 21 C 0.13 4.46 7.08 42.36 0.30 4.76 16 22 C -0.29 -8.30 10.57 22.22 0.23 -8.06 16 23 C 0.09 1.68 11.96 83.45 1.00 2.68 16 24 N -0.46 -9.48 7.35 -57.69 -0.42 -9.90 16 25 H 0.46 5.36 8.96 -213.34 -1.91 3.44 16 26 N -0.31 -9.84 12.69 -48.38 -0.61 -10.45 16 27 S 0.32 13.80 18.27 -56.49 -1.03 12.77 16 28 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 29 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 30 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.12 4.78 4.05 -2.39 -0.01 4.77 16 32 H 0.13 4.97 7.54 -2.39 -0.02 4.95 16 33 H 0.29 13.05 8.31 -92.70 -0.77 12.28 16 34 H 0.15 5.63 8.04 -2.91 -0.02 5.61 16 35 H 0.15 4.93 8.06 -2.91 -0.02 4.90 16 36 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.23 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -70.64 339.17 3.92 -66.72 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.87 Total: 25.02 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.14 Total: 12.91 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -1.75 Total: -85.36 kcal Atomic # 8 Polarization: -69.68 SS G_CDS: -0.27 Total: -69.95 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 1.71 Total: 37.88 kcal Atomic # 16 Polarization: 13.80 SS G_CDS: -1.03 Total: 12.77 kcal Total: -70.64 3.92 -66.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431818552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.658 kcal (2) G-P(sol) polarization free energy of solvation -70.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds