Wall clock time and date at job start Tue Mar 31 2020 19:30:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.35232 * 126.06766 * 2 1
4 4 C 1.40424 * 107.86568 * 179.84878 * 3 2 1
5 5 N 1.40096 * 125.97313 * 180.18473 * 4 3 2
6 6 C 1.34768 * 120.00147 * 0.30332 * 5 4 3
7 7 O 1.21608 * 120.00323 * 359.97438 * 6 5 4
8 8 C 1.47517 * 120.00064 * 179.97438 * 6 5 4
9 9 C 1.39718 * 120.18272 * 359.72531 * 8 6 5
10 10 C 1.37899 * 119.89172 * 179.78975 * 9 8 6
11 11 Cl 1.73594 * 119.86436 * 180.25153 * 10 9 8
12 12 C 1.38640 * 120.26902 * 0.48173 * 10 9 8
13 13 C 1.38059 * 120.38285 * 359.74608 * 12 10 9
14 14 C 1.38691 * 120.10135 * 0.02562 * 13 12 10
15 15 O 1.35672 * 120.13873 * 179.97438 * 14 13 12
16 16 N 1.31229 * 108.04913 * 0.41799 * 4 3 2
17 17 N 1.34973 * 126.06634 * 180.31071 * 2 1 3
18 18 C 1.46498 * 125.97410 * 359.96275 * 17 2 1
19 19 C 1.50702 * 109.47036 * 90.00121 * 18 17 2
20 20 H 1.08000 * 120.00135 * 359.97438 * 19 18 17
21 21 C 1.37879 * 120.00214 * 179.97438 * 19 18 17
22 22 N 1.31514 * 119.99653 * 0.02562 * 21 19 18
23 23 Si 1.86799 * 120.00146 * 180.02562 * 21 19 18
24 24 H 1.48501 * 109.47144 * 359.97438 * 23 21 19
25 25 H 1.48498 * 109.47003 * 120.00274 * 23 21 19
26 26 H 1.48499 * 109.47189 * 240.00201 * 23 21 19
27 27 H 1.09002 * 109.47152 * 269.68932 * 1 2 3
28 28 H 1.09001 * 109.46980 * 149.69032 * 1 2 3
29 29 H 1.09004 * 109.47113 * 29.69013 * 1 2 3
30 30 H 1.08003 * 126.06492 * 359.97438 * 3 2 1
31 31 H 0.97007 * 119.99622 * 180.29444 * 5 4 3
32 32 H 1.07998 * 120.05747 * 359.97438 * 9 8 6
33 33 H 1.08004 * 119.80570 * 179.71949 * 12 10 9
34 34 H 1.08004 * 119.94497 * 179.97438 * 13 12 10
35 35 H 0.96700 * 113.99997 * 270.02586 * 15 14 13
36 36 H 1.08993 * 109.47060 * 209.99617 * 18 17 2
37 37 H 1.08996 * 109.47079 * 330.00441 * 18 17 2
38 38 H 0.96998 * 120.00028 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3032 1.0931 0.0000
4 6 3.6372 0.6545 0.0035
5 7 4.7731 1.4745 0.0083
6 6 4.6363 2.8152 0.0161
7 8 3.5269 3.3133 0.0185
8 6 5.8324 3.6786 0.0217
9 6 7.1088 3.1105 0.0248
10 6 8.2228 3.9232 0.0257
11 17 9.8084 3.2166 0.0229
12 6 8.0816 5.3024 0.0336
13 6 6.8257 5.8757 0.0354
14 6 5.6947 5.0731 0.0298
15 8 4.4601 5.6357 0.0321
16 7 3.6337 -0.6578 -0.0035
17 7 2.3016 -1.0910 -0.0059
18 6 1.8499 -2.4846 -0.0127
19 6 1.6943 -2.9553 -1.4359
20 1 1.9099 -2.2834 -2.2535
21 6 1.2767 -4.2437 -1.6941
22 7 1.0137 -5.0617 -0.6985
23 14 1.0845 -4.8273 -3.4582
24 1 1.4395 -3.7236 -4.3862
25 1 1.9839 -5.9845 -3.6974
26 1 -0.3232 -5.2375 -3.6933
27 1 -0.3633 -0.0056 1.0277
28 1 -0.3633 -0.8872 -0.5186
29 1 -0.3633 0.8928 -0.5090
30 1 1.9718 2.1210 -0.0004
31 1 5.6580 1.0772 0.0062
32 1 7.2229 2.0365 0.0235
33 1 8.9593 5.9319 0.0388
34 1 6.7239 6.9510 0.0420
35 1 4.1017 5.7941 0.9161
36 1 2.5848 -3.1072 0.4975
37 1 0.8915 -2.5584 0.5012
38 1 0.7196 -5.9679 -0.8801
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000436622766.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:30:25
Heat of formation + Delta-G solvation = 23.373506 kcal
Electronic energy + Delta-G solvation = -25136.001145 eV
Core-core repulsion = 21199.603938 eV
Total energy + Delta-G solvation = -3936.397207 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.082 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.05276 -40.32151 -38.68413 -37.54568 -36.38342 -34.87965 -33.45789 -32.15941
-31.25107 -30.71285 -30.00648 -26.78659 -26.37138 -24.75976 -23.31662 -22.74819
-21.45570 -19.88187 -19.54903 -18.65846 -17.61749 -16.73791 -16.70843 -16.06635
-15.91546 -15.60932 -15.22569 -15.14674 -14.68593 -14.32131 -14.05545 -13.87370
-13.62561 -13.09428 -12.94509 -12.71424 -12.50122 -12.34666 -12.19393 -11.72501
-11.62114 -11.43789 -11.42452 -11.15548 -11.02513 -10.86599 -10.46321 -10.26517
-9.98159 -9.66027 -9.63545 -9.53234 -8.99535 -8.66355 -7.97389 -7.49199
-6.27242 -4.34879 0.23905 0.57842 1.65226 2.32433 2.65183 2.79642
3.17569 3.19613 3.27663 3.33917 3.70910 3.75718 3.81175 4.20838
4.23523 4.30325 4.64261 4.73897 4.96910 5.06535 5.18157 5.35119
5.41033 5.59406 5.67529 5.73893 5.91078 5.99852 6.08155 6.19845
6.44776 6.51248 6.68850 6.90879 7.03064 7.32909 7.38117 7.58826
7.65963 7.86961 8.02265 8.14988 8.61089 8.73573 9.31781 10.80098
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.015647 B = 0.002559 C = 0.002308
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1789.102454 B =10939.474380 C =12127.295045
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.089 4.089
2 C 0.092 3.908
3 C -0.288 4.288
4 C 0.263 3.737
5 N -0.626 5.626
6 C 0.564 3.436
7 O -0.493 6.493
8 C -0.146 4.146
9 C -0.062 4.062
10 C -0.054 4.054
11 Cl -0.060 7.060
12 C -0.069 4.069
13 C -0.143 4.143
14 C 0.179 3.821
15 O -0.473 6.473
16 N -0.319 5.319
17 N -0.315 5.315
18 C 0.258 3.742
19 C -0.536 4.536
20 H 0.065 0.935
21 C 0.065 3.935
22 N -0.891 5.891
23 Si 0.906 3.094
24 H -0.271 1.271
25 H -0.281 1.281
26 H -0.280 1.280
27 H 0.071 0.929
28 H 0.082 0.918
29 H 0.075 0.925
30 H 0.160 0.840
31 H 0.408 0.592
32 H 0.143 0.857
33 H 0.143 0.857
34 H 0.147 0.853
35 H 0.400 0.600
36 H 0.052 0.948
37 H 0.055 0.945
38 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.305 21.194 4.663 24.946
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.039 4.039
3 C -0.319 4.319
4 C 0.010 3.990
5 N -0.274 5.274
6 C 0.350 3.650
7 O -0.366 6.366
8 C -0.150 4.150
9 C -0.081 4.081
10 C -0.081 4.081
11 Cl -0.031 7.031
12 C -0.088 4.088
13 C -0.162 4.162
14 C 0.131 3.869
15 O -0.285 6.285
16 N -0.149 5.149
17 N -0.098 5.098
18 C 0.140 3.860
19 C -0.575 4.575
20 H 0.083 0.917
21 C -0.138 4.138
22 N -0.529 5.529
23 Si 0.733 3.267
24 H -0.196 1.196
25 H -0.206 1.206
26 H -0.206 1.206
27 H 0.089 0.911
28 H 0.101 0.899
29 H 0.094 0.906
30 H 0.178 0.822
31 H 0.244 0.756
32 H 0.161 0.839
33 H 0.161 0.839
34 H 0.165 0.835
35 H 0.259 0.741
36 H 0.070 0.930
37 H 0.073 0.927
38 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 12.307 20.104 4.110 23.927
hybrid contribution 0.157 -0.161 -0.487 0.536
sum 12.464 19.943 3.624 23.795
Atomic orbital electron populations
1.20384 0.87846 1.03932 1.02555 1.21075 0.94960 0.87095 1.00798
1.21249 0.89616 0.99863 1.21196 1.18913 0.87015 0.89591 1.03461
1.42321 1.07721 1.04904 1.72473 1.17765 0.88687 0.80990 0.77577
1.90770 1.25356 1.73624 1.46868 1.20256 0.92846 0.93880 1.08026
1.21202 0.89891 1.00584 0.96450 1.20756 0.86788 0.93373 1.07168
1.98399 1.23663 1.84056 1.96962 1.21131 0.98247 0.92714 0.96661
1.21422 0.90834 1.01092 1.02867 1.18499 0.85813 0.88629 0.93910
1.84764 1.28478 1.81490 1.33720 1.77261 1.00046 1.08393 1.29231
1.49014 1.00903 1.07843 1.52004 1.19709 0.96008 0.71275 0.98990
1.21367 1.46747 0.97987 0.91364 0.91664 1.24931 0.94658 0.96037
0.98164 1.69928 1.44949 1.06967 1.31100 0.86302 0.77884 0.78809
0.83719 1.19551 1.20639 1.20622 0.91051 0.89874 0.90565 0.82244
0.75563 0.83939 0.83930 0.83526 0.74081 0.92962 0.92731 0.92289
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.50 9.89 36.01 0.36 -1.15 16
2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16
3 C -0.29 -5.88 9.52 -39.83 -0.38 -6.26 16
4 C 0.26 5.33 8.11 -154.44 -1.25 4.08 16
5 N -0.63 -9.82 5.40 -12.08 -0.07 -9.89 16
6 C 0.56 8.30 7.73 -12.48 -0.10 8.21 16
7 O -0.49 -8.49 12.28 -16.62 -0.20 -8.69 16
8 C -0.15 -1.62 5.89 -104.85 -0.62 -2.24 16
9 C -0.06 -0.57 9.31 -39.15 -0.36 -0.93 16
10 C -0.05 -0.44 6.31 -39.56 -0.25 -0.69 16
11 Cl -0.06 -0.48 28.94 -51.86 -1.50 -1.98 16
12 C -0.07 -0.46 9.81 -39.50 -0.39 -0.84 16
13 C -0.14 -1.00 9.97 -39.48 -0.39 -1.40 16
14 C 0.18 1.74 6.72 -38.70 -0.26 1.48 16
15 O -0.47 -4.82 11.57 -40.61 -0.47 -5.29 16
16 N -0.32 -7.33 12.59 31.43 0.40 -6.93 16
17 N -0.32 -7.44 3.59 -58.33 -0.21 -7.65 16
18 C 0.26 6.58 5.81 -5.19 -0.03 6.55 16
19 C -0.54 -14.73 9.39 -34.44 -0.32 -15.05 16
20 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16
21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16
22 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16
23 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16
24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
28 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16
29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16
30 H 0.16 3.14 5.91 -52.48 -0.31 2.83 16
31 H 0.41 5.22 6.85 -40.82 -0.28 4.94 16
32 H 0.14 1.15 6.40 -52.49 -0.34 0.81 16
33 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16
34 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16
35 H 0.40 2.48 9.06 45.56 0.41 2.89 16
36 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16
37 H 0.05 1.37 7.65 -51.93 -0.40 0.98 16
38 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16
LS Contribution 349.60 15.07 5.27 5.27
Total: -1.00 -33.34 349.60 -8.70 -42.05
By element:
Atomic # 1 Polarization: 9.46 SS G_CDS: -2.97 Total: 6.49 kcal
Atomic # 6 Polarization: -0.55 SS G_CDS: -4.66 Total: -5.21 kcal
Atomic # 7 Polarization: -49.56 SS G_CDS: 0.86 Total: -48.70 kcal
Atomic # 8 Polarization: -13.31 SS G_CDS: -0.67 Total: -13.98 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal
Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -33.34 -8.70 -42.05 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000436622766.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.419 kcal
(2) G-P(sol) polarization free energy of solvation -33.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.077 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.374 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds