Wall clock time and date at job start Tue Mar 31 2020 19:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48499 * 109.46996 * 239.99971 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 119.99767 * 3 2 1 7 7 C 1.37871 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47113 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46681 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99854 * 179.97438 * 11 10 9 13 13 O 1.21603 * 119.99960 * 0.02562 * 12 11 10 14 14 C 1.47470 * 120.00013 * 180.27844 * 12 11 10 15 15 N 1.32000 * 126.44674 * 359.74820 * 14 12 11 16 16 N 1.28463 * 110.22258 * 179.97438 * 15 14 12 17 17 C 1.40107 * 124.93443 * 179.97438 * 16 15 14 18 18 C 1.38870 * 120.05034 * 179.75903 * 17 16 15 19 19 C 1.38106 * 119.93761 * 179.74452 * 18 17 16 20 20 C 1.38395 * 120.05563 * 0.52776 * 19 18 17 21 21 Cl 1.73597 * 119.94111 * 179.74487 * 20 19 18 22 22 C 1.38390 * 120.11346 * 359.72149 * 20 19 18 23 23 C 1.38097 * 120.05885 * 0.02562 * 22 20 19 24 24 C 1.36111 * 110.12744 * 0.02562 * 16 15 14 25 25 C 1.35764 * 107.06277 * 359.72020 * 24 16 15 26 26 O 1.36075 * 127.26393 * 180.29710 * 25 24 16 27 27 H 0.96996 * 120.00389 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46468 * 60.00321 * 9 7 2 29 29 H 1.08997 * 109.47109 * 300.00484 * 9 7 2 30 30 H 1.08992 * 109.47068 * 60.00849 * 10 9 7 31 31 H 1.08997 * 109.47540 * 300.00235 * 10 9 7 32 32 H 0.97000 * 120.00410 * 0.02562 * 11 10 9 33 33 H 1.07992 * 120.02936 * 359.96984 * 18 17 16 34 34 H 1.08001 * 119.97026 * 180.22482 * 19 18 17 35 35 H 1.08000 * 119.97357 * 180.02562 * 22 20 19 36 36 H 1.07997 * 120.03318 * 179.97438 * 23 22 20 37 37 H 1.07995 * 126.46834 * 179.97438 * 24 16 15 38 38 H 0.96700 * 113.99914 * 270.14392 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0979 0.0013 13 8 3.4028 -6.0979 0.0008 14 6 1.4495 -7.3751 -0.0043 15 7 0.1378 -7.5233 -0.0045 16 7 -0.1680 -8.7710 -0.0108 17 6 -1.4746 -9.2768 -0.0122 18 6 -1.6892 -10.6487 -0.0243 19 6 -2.9781 -11.1448 -0.0204 20 6 -4.0553 -10.2758 -0.0155 21 17 -5.6741 -10.9026 -0.0173 22 6 -3.8440 -8.9082 -0.0087 23 6 -2.5571 -8.4070 -0.0073 24 6 0.9617 -9.5302 -0.0146 25 6 2.0162 -8.6751 -0.0167 26 8 3.3382 -8.9974 -0.0263 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 2.8726 -3.6039 0.8909 31 1 2.8714 -3.6046 -0.8890 32 1 0.5429 -4.9308 0.0020 33 1 -0.8490 -11.3271 -0.0330 34 1 -3.1456 -12.2117 -0.0261 35 1 -4.6862 -8.2321 -0.0045 36 1 -2.3927 -7.3397 -0.0024 37 1 1.0101 -10.6090 -0.0197 38 1 3.7251 -9.0971 0.8543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447533407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:55 Heat of formation + Delta-G solvation = 22.390854 kcal Electronic energy + Delta-G solvation = -24586.146468 eV Core-core repulsion = 20649.706650 eV Total energy + Delta-G solvation = -3936.439818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.22105 -39.87197 -38.88894 -37.43138 -36.95221 -34.83228 -33.66376 -32.78179 -32.01252 -30.48209 -29.83650 -29.04535 -25.52365 -24.12164 -23.82531 -22.20795 -21.43894 -20.91707 -20.01224 -19.13205 -17.80975 -17.29055 -17.00258 -16.49759 -16.33640 -15.71759 -15.18625 -15.07348 -14.79128 -14.50961 -14.48099 -14.42320 -14.07607 -13.91331 -13.33004 -13.02237 -12.85474 -12.30393 -12.27106 -12.10701 -11.89034 -11.35838 -11.19983 -11.01119 -10.67482 -10.61872 -10.34097 -10.19599 -9.96361 -9.76700 -9.51949 -9.39456 -9.24416 -8.62767 -8.48022 -8.31885 -6.07285 -4.10225 0.07342 0.59627 1.54062 1.56337 1.71080 1.89940 3.00755 3.32808 3.36346 3.38359 3.46643 3.55231 3.84369 4.08321 4.19466 4.35467 4.43517 4.45164 4.55441 4.80658 4.83960 5.05892 5.24014 5.29263 5.29625 5.40174 5.55443 5.60818 5.88423 5.92685 6.34164 6.35710 6.47877 6.74151 6.88382 7.43351 7.49038 7.55436 7.63857 7.90737 8.02338 8.28980 8.58866 8.95443 9.54364 11.04321 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.002352 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.422086 B =11900.739271 C =14267.212352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.705 5.705 12 C 0.590 3.410 13 O -0.530 6.530 14 C -0.008 4.008 15 N -0.245 5.245 16 N -0.232 5.232 17 C 0.148 3.852 18 C -0.116 4.116 19 C -0.087 4.087 20 C -0.040 4.040 21 Cl -0.061 7.061 22 C -0.085 4.085 23 C -0.095 4.095 24 C -0.044 4.044 25 C 0.058 3.942 26 O -0.450 6.450 27 H 0.262 0.738 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.403 0.597 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.191 0.809 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -27.429 1.613 28.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.355 5.355 12 C 0.373 3.627 13 O -0.405 6.405 14 C -0.171 4.171 15 N -0.078 5.078 16 N -0.015 5.015 17 C 0.057 3.943 18 C -0.137 4.137 19 C -0.106 4.106 20 C -0.067 4.067 21 Cl -0.032 7.032 22 C -0.104 4.104 23 C -0.115 4.115 24 C -0.184 4.184 25 C 0.003 3.997 26 O -0.256 6.256 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.238 0.762 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.208 0.792 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -9.560 -26.721 1.001 28.397 hybrid contribution 0.584 0.335 0.470 0.821 sum -8.975 -26.386 1.471 27.909 Atomic orbital electron populations 1.69946 1.06087 1.26970 1.50296 1.24993 0.94893 0.99390 0.95000 0.86567 0.79507 0.82646 0.78782 1.20102 1.21269 1.20107 1.21009 0.93228 0.90342 1.51462 0.92232 1.19326 0.94196 0.90982 0.97980 1.21814 0.96131 0.81076 1.01075 1.46231 1.10982 1.06016 1.72257 1.16773 0.86425 0.81656 0.77870 1.90810 1.12373 1.86681 1.50653 1.22900 0.89377 0.96343 1.08494 1.73679 1.15896 0.99524 1.18727 1.42193 1.04626 1.03542 1.51143 1.17692 0.80545 0.92913 1.03175 1.20797 0.98049 0.92366 1.02500 1.20871 0.90000 1.00416 0.99296 1.21057 0.86616 0.93852 1.05162 1.98397 1.20815 1.87191 1.96787 1.21043 0.97412 0.93472 0.98503 1.21029 0.89959 1.01376 0.99126 1.22896 0.85133 0.99260 1.11086 1.18096 0.85299 0.89354 1.06971 1.84905 1.16925 1.90561 1.33221 0.92796 0.95843 0.95846 0.92213 0.92200 0.76218 0.83830 0.83627 0.83436 0.82681 0.79212 0.75393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 11 N -0.71 -13.36 5.55 -61.37 -0.34 -13.70 16 12 C 0.59 11.09 7.82 -12.50 -0.10 10.99 16 13 O -0.53 -11.38 16.53 3.03 0.05 -11.33 16 14 C -0.01 -0.13 7.13 -82.66 -0.59 -0.72 16 15 N -0.24 -3.42 10.84 33.46 0.36 -3.06 16 16 N -0.23 -2.59 3.52 -10.40 -0.04 -2.63 16 17 C 0.15 1.33 6.66 -83.61 -0.56 0.77 16 18 C -0.12 -0.72 9.43 -39.40 -0.37 -1.09 16 19 C -0.09 -0.48 9.82 -39.57 -0.39 -0.87 16 20 C -0.04 -0.27 6.32 -39.47 -0.25 -0.52 16 21 Cl -0.06 -0.40 28.95 -51.86 -1.50 -1.90 16 22 C -0.09 -0.61 9.82 -39.58 -0.39 -1.00 16 23 C -0.10 -0.83 9.59 -39.40 -0.38 -1.20 16 24 C -0.04 -0.44 10.81 -16.54 -0.18 -0.62 16 25 C 0.06 0.76 7.35 -39.10 -0.29 0.48 16 26 O -0.45 -5.64 13.20 -22.23 -0.29 -5.93 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.40 7.02 8.19 -40.82 -0.33 6.69 16 33 H 0.14 0.52 6.64 -52.49 -0.35 0.17 16 34 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.16 1.44 7.64 -52.49 -0.40 1.03 16 37 H 0.19 1.05 6.96 -52.49 -0.37 0.69 16 38 H 0.39 3.11 9.07 45.56 0.41 3.52 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -34.32 355.99 -7.86 -42.18 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -3.11 Total: 4.38 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -4.06 Total: -4.29 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.72 Total: -44.93 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.24 Total: -17.26 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.50 Total: -1.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.32 -7.86 -42.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447533407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.571 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds