Wall clock time and date at job start Tue Mar 31 2020 19:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48499 * 109.46996 * 239.99971 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 119.99767 * 3 2 1 7 7 C 1.37871 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47113 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46681 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99854 * 179.97438 * 11 10 9 13 13 O 1.21603 * 119.99960 * 0.02562 * 12 11 10 14 14 C 1.47470 * 120.00013 * 180.27844 * 12 11 10 15 15 N 1.32000 * 126.44674 * 359.74820 * 14 12 11 16 16 N 1.28463 * 110.22258 * 179.97438 * 15 14 12 17 17 C 1.40107 * 124.93443 * 179.97438 * 16 15 14 18 18 C 1.38870 * 120.05034 * 179.75903 * 17 16 15 19 19 C 1.38106 * 119.93761 * 179.74452 * 18 17 16 20 20 C 1.38395 * 120.05563 * 0.52776 * 19 18 17 21 21 Cl 1.73597 * 119.94111 * 179.74487 * 20 19 18 22 22 C 1.38390 * 120.11346 * 359.72149 * 20 19 18 23 23 C 1.38097 * 120.05885 * 0.02562 * 22 20 19 24 24 C 1.36111 * 110.12744 * 0.02562 * 16 15 14 25 25 C 1.35764 * 107.06277 * 359.72020 * 24 16 15 26 26 O 1.36075 * 127.26393 * 180.29710 * 25 24 16 27 27 H 0.96996 * 120.00389 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46468 * 60.00321 * 9 7 2 29 29 H 1.08997 * 109.47109 * 300.00484 * 9 7 2 30 30 H 1.08992 * 109.47068 * 60.00849 * 10 9 7 31 31 H 1.08997 * 109.47540 * 300.00235 * 10 9 7 32 32 H 0.97000 * 120.00410 * 0.02562 * 11 10 9 33 33 H 1.07992 * 120.02936 * 359.96984 * 18 17 16 34 34 H 1.08001 * 119.97026 * 180.22482 * 19 18 17 35 35 H 1.08000 * 119.97357 * 180.02562 * 22 20 19 36 36 H 1.07997 * 120.03318 * 179.97438 * 23 22 20 37 37 H 1.07995 * 126.46834 * 179.97438 * 24 16 15 38 38 H 0.96700 * 113.99914 * 270.14392 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0979 0.0013 13 8 3.4028 -6.0979 0.0008 14 6 1.4495 -7.3751 -0.0043 15 7 0.1378 -7.5233 -0.0045 16 7 -0.1680 -8.7710 -0.0108 17 6 -1.4746 -9.2768 -0.0122 18 6 -1.6892 -10.6487 -0.0243 19 6 -2.9781 -11.1448 -0.0204 20 6 -4.0553 -10.2758 -0.0155 21 17 -5.6741 -10.9026 -0.0173 22 6 -3.8440 -8.9082 -0.0087 23 6 -2.5571 -8.4070 -0.0073 24 6 0.9617 -9.5302 -0.0146 25 6 2.0162 -8.6751 -0.0167 26 8 3.3382 -8.9974 -0.0263 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 2.8726 -3.6039 0.8909 31 1 2.8714 -3.6046 -0.8890 32 1 0.5429 -4.9308 0.0020 33 1 -0.8490 -11.3271 -0.0330 34 1 -3.1456 -12.2117 -0.0261 35 1 -4.6862 -8.2321 -0.0045 36 1 -2.3927 -7.3397 -0.0024 37 1 1.0101 -10.6090 -0.0197 38 1 3.7251 -9.0971 0.8543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447533407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:54 Heat of formation + Delta-G solvation = -1.920553 kcal Electronic energy + Delta-G solvation = -24587.200690 eV Core-core repulsion = 20649.706650 eV Total energy + Delta-G solvation = -3937.494040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.13650 -40.71112 -40.14932 -38.31972 -37.51923 -36.61674 -34.91105 -34.37640 -32.58902 -31.82356 -31.02576 -30.09087 -27.16264 -25.46162 -24.46848 -23.30125 -22.66089 -22.20366 -21.29871 -19.96688 -18.72147 -18.55329 -18.27483 -17.72831 -17.38032 -16.74111 -16.49774 -16.37077 -16.26750 -15.85066 -15.37697 -15.18569 -14.87624 -14.85679 -14.62092 -14.45848 -14.28951 -13.42452 -13.25658 -13.02548 -12.94335 -12.73557 -12.59229 -12.55283 -12.26342 -11.89065 -11.75692 -11.66827 -11.48230 -11.09346 -11.06787 -10.60930 -10.28359 -10.22917 -10.11058 -9.29547 -8.24094 -6.35205 -0.60441 0.08569 0.46615 0.92518 0.96710 1.15271 1.41801 1.44727 1.52555 2.10023 2.16505 2.42842 2.45994 2.89669 3.10422 3.40010 3.59580 3.66560 3.78776 3.86918 4.00341 4.16990 4.38352 4.41368 4.46025 4.48868 4.74247 4.81665 4.82272 4.90586 4.99698 5.11340 5.19694 5.35741 5.44749 5.54899 5.74388 5.77202 6.13851 6.36076 6.63949 6.74473 6.77639 7.08831 7.34037 8.87868 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011716 B = 0.002352 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.422086 B =11900.739271 C =14267.212352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.023 3.977 10 C 0.140 3.860 11 N -0.705 5.705 12 C 0.592 3.408 13 O -0.563 6.563 14 C -0.046 4.046 15 N -0.259 5.259 16 N -0.222 5.222 17 C 0.118 3.882 18 C -0.099 4.099 19 C -0.080 4.080 20 C -0.040 4.040 21 Cl -0.059 7.059 22 C -0.091 4.091 23 C -0.108 4.108 24 C -0.015 4.015 25 C 0.039 3.961 26 O -0.463 6.463 27 H 0.266 0.734 28 H 0.006 0.994 29 H 0.008 0.992 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.410 0.590 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.243 0.757 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.482 -29.986 1.694 31.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.080 0.920 9 C -0.014 4.014 10 C 0.017 3.983 11 N -0.355 5.355 12 C 0.377 3.623 13 O -0.441 6.441 14 C -0.207 4.207 15 N -0.095 5.095 16 N -0.006 5.006 17 C 0.028 3.972 18 C -0.119 4.119 19 C -0.099 4.099 20 C -0.067 4.067 21 Cl -0.030 7.030 22 C -0.110 4.110 23 C -0.128 4.128 24 C -0.155 4.155 25 C -0.016 4.016 26 O -0.272 6.272 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.245 0.755 33 H 0.196 0.804 34 H 0.193 0.807 35 H 0.173 0.827 36 H 0.157 0.843 37 H 0.259 0.741 38 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -9.954 -29.293 1.093 30.958 hybrid contribution 0.515 0.970 0.455 1.188 sum -9.439 -28.324 1.548 29.895 Atomic orbital electron populations 1.70062 1.07636 1.28108 1.50901 1.25909 0.95815 1.03219 0.94342 0.85462 0.78262 0.77907 0.79202 1.19291 1.20598 1.19182 1.21429 0.93691 0.91698 1.51716 0.91974 1.19129 0.94204 0.91817 0.96267 1.21353 0.95097 0.81437 1.00427 1.46065 1.11164 1.05475 1.72814 1.17143 0.86232 0.82426 0.76464 1.90768 1.13813 1.87390 1.52118 1.22478 0.90346 0.95729 1.12120 1.73606 1.15138 1.01470 1.19282 1.42480 1.05953 1.02854 1.49276 1.18036 0.79365 0.94248 1.05596 1.21163 0.99377 0.91223 1.00119 1.21237 0.89228 1.01698 0.97772 1.21241 0.87191 0.93845 1.04469 1.98405 1.20826 1.87025 1.96711 1.21117 0.97046 0.94206 0.98641 1.21005 0.90889 1.00904 1.00030 1.23534 0.83201 1.00877 1.07895 1.18270 0.86198 0.88813 1.08313 1.84856 1.17006 1.90346 1.34950 0.92516 0.97562 0.97394 0.92681 0.92987 0.75476 0.80409 0.80686 0.82694 0.84328 0.74132 0.73528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.29 21.44 0.28 -55.16 16 2 C 0.01 0.33 5.46 84.65 0.46 0.80 16 3 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -31.20 9.11 25.60 0.23 -30.96 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.22 5.09 29.85 0.15 1.38 16 10 C 0.14 6.37 5.61 86.38 0.48 6.85 16 11 N -0.71 -28.08 5.55 -466.34 -2.59 -30.67 16 12 C 0.59 23.18 7.82 86.68 0.68 23.86 16 13 O -0.56 -25.09 16.53 -1.89 -0.03 -25.12 16 14 C -0.05 -1.48 7.13 42.44 0.30 -1.18 16 15 N -0.26 -7.32 10.84 -48.05 -0.52 -7.84 16 16 N -0.22 -4.60 3.52 -186.81 -0.66 -5.26 16 17 C 0.12 1.87 6.66 38.12 0.25 2.12 16 18 C -0.10 -0.81 9.43 22.39 0.21 -0.60 16 19 C -0.08 -0.59 9.82 22.28 0.22 -0.37 16 20 C -0.04 -0.45 6.32 22.34 0.14 -0.31 16 21 Cl -0.06 -0.65 28.95 -2.72 -0.08 -0.73 16 22 C -0.09 -1.21 9.82 22.27 0.22 -0.99 16 23 C -0.11 -1.84 9.59 22.39 0.21 -1.63 16 24 C -0.02 -0.25 10.81 83.46 0.90 0.65 16 25 C 0.04 1.00 7.35 22.58 0.17 1.16 16 26 O -0.46 -11.19 13.20 -92.25 -1.22 -12.41 16 27 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.01 0.33 8.14 -2.38 -0.02 0.32 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.41 15.16 8.19 -92.71 -0.76 14.40 16 33 H 0.18 0.20 6.64 -2.91 -0.02 0.18 16 34 H 0.18 0.29 8.06 -2.91 -0.02 0.26 16 35 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 36 H 0.14 2.75 7.64 -2.91 -0.02 2.73 16 37 H 0.24 1.28 6.96 -2.91 -0.02 1.26 16 38 H 0.41 6.17 9.07 -74.06 -0.67 5.50 16 Total: -1.00 -76.44 355.99 1.56 -74.88 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -0.29 Total: 15.29 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 4.64 Total: 0.78 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -3.48 Total: -98.92 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.25 Total: -37.53 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -76.44 1.56 -74.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447533407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.959 kcal (2) G-P(sol) polarization free energy of solvation -76.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds