Wall clock time and date at job start Tue Mar 31 2020 18:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35826 * 116.99807 * 2 1 4 4 C 1.38522 * 120.13541 * 0.02562 * 3 2 1 5 5 C 1.38225 * 120.09214 * 179.97438 * 4 3 2 6 6 C 1.38435 * 120.35395 * 359.97438 * 5 4 3 7 7 C 1.37922 * 120.26900 * 359.97438 * 6 5 4 8 8 C 1.39579 * 119.90755 * 0.02562 * 7 6 5 9 9 C 1.47670 * 120.17976 * 179.97438 * 8 7 6 10 10 N 1.31107 * 126.30791 * 180.02562 * 9 8 7 11 11 N 1.28649 * 109.41954 * 179.97438 * 10 9 8 12 12 C 1.31252 * 109.45342 * 359.97438 * 11 10 9 13 13 S 1.76199 * 126.28628 * 179.97438 * 12 11 10 14 14 C 1.81009 * 99.99626 * 359.97438 * 13 12 11 15 15 C 1.50697 * 109.46750 * 179.97438 * 14 13 12 16 16 O 1.21287 * 120.00320 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99702 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99916 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99939 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99981 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99864 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99914 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47157 * 89.99713 * 22 20 18 24 24 H 1.48503 * 109.47081 * 209.99589 * 22 20 18 25 25 H 1.48503 * 109.47199 * 329.99560 * 22 20 18 26 26 O 1.34710 * 107.43352 * 359.73430 * 12 11 10 27 27 H 1.08995 * 109.46819 * 299.99757 * 1 2 3 28 28 H 1.09000 * 109.47271 * 59.99568 * 1 2 3 29 29 H 1.08998 * 109.46954 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.95754 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.81864 * 179.69783 * 5 4 3 32 32 H 1.08008 * 119.85995 * 180.02562 * 6 5 4 33 33 H 1.08005 * 120.04919 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.46512 * 299.99461 * 14 13 12 35 35 H 1.08998 * 109.46918 * 59.99860 * 14 13 12 36 36 H 0.96997 * 119.99917 * 0.02562 * 17 15 14 37 37 H 0.97003 * 119.99751 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2939 2.3737 0.0005 5 6 1.9223 3.6049 0.0011 6 6 3.3043 3.6849 0.0016 7 6 4.0672 2.5358 0.0021 8 6 3.4442 1.2868 0.0016 9 6 4.2551 0.0527 0.0016 10 7 3.7985 -1.1763 0.0007 11 7 4.7869 -1.9998 0.0005 12 6 5.9149 -1.3288 0.0007 13 16 7.5372 -2.0164 0.0012 14 6 7.1309 -3.7803 0.0020 15 6 8.4027 -4.5887 0.0019 16 8 9.4779 -4.0276 0.0009 17 7 8.3452 -5.9353 0.0030 18 6 9.5022 -6.6707 0.0024 19 1 10.4596 -6.1710 0.0014 20 6 9.4429 -8.0590 0.0029 21 7 10.5520 -8.7639 0.0028 22 14 7.7869 -8.9231 0.0038 23 1 7.3475 -9.1526 -1.3960 24 1 7.9092 -10.2269 0.7043 25 1 6.7873 -8.0769 0.7040 26 8 5.6048 -0.0179 -0.0049 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2153 2.3189 0.0005 31 1 1.3319 4.5092 -0.0035 32 1 3.7871 4.6511 0.0024 33 1 5.1452 2.6024 0.0030 34 1 6.5486 -4.0185 0.8922 35 1 6.5486 -4.0194 -0.8879 36 1 7.4853 -6.3840 0.0035 37 1 10.5106 -9.7331 0.0036 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488127701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:51 Heat of formation + Delta-G solvation = -16.285715 kcal Electronic energy + Delta-G solvation = -24472.802781 eV Core-core repulsion = 20536.729528 eV Total energy + Delta-G solvation = -3936.073254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -45.14094 -41.16924 -40.39222 -38.44831 -37.31960 -36.19494 -34.03710 -33.88762 -31.62001 -31.26198 -30.60834 -28.21265 -26.67426 -25.77055 -25.06249 -23.02455 -22.78704 -21.64148 -20.71804 -19.80971 -19.09288 -18.60026 -17.93875 -17.88745 -17.43706 -16.79429 -16.69479 -16.60073 -16.46152 -15.77321 -15.59860 -15.18441 -15.03243 -14.67900 -14.60430 -14.09512 -14.08865 -13.87451 -13.61681 -13.18336 -13.02354 -13.00049 -12.73023 -12.49013 -12.45237 -12.08033 -12.02516 -12.01675 -11.91813 -11.74074 -11.62026 -10.80271 -10.36967 -10.11055 -9.41823 -8.83067 -8.47853 -6.10498 -0.67279 -0.67070 0.30928 0.40764 0.67994 1.29246 1.30263 1.32359 1.42654 1.50874 1.70575 2.18434 2.25702 2.64729 2.67718 3.02311 3.06961 3.61099 3.75659 3.83301 3.89433 3.96580 4.01013 4.19841 4.23982 4.28544 4.37837 4.39866 4.40793 4.43327 4.75363 4.82106 5.13983 5.30109 5.41997 5.43444 5.68905 5.83846 6.33588 6.42604 6.73144 7.00915 7.22183 7.70386 8.68215 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.023577 B = 0.002236 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.289018 B =12517.703389 C =13684.543871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.318 6.318 3 C 0.163 3.837 4 C -0.212 4.212 5 C -0.040 4.040 6 C -0.155 4.155 7 C -0.052 4.052 8 C -0.099 4.099 9 C 0.214 3.786 10 N -0.277 5.277 11 N -0.309 5.309 12 C 0.117 3.883 13 S 0.151 5.849 14 C -0.138 4.138 15 C 0.467 3.533 16 O -0.607 6.607 17 N -0.570 5.570 18 C -0.332 4.332 19 H 0.066 0.934 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.957 3.043 23 H -0.256 1.256 24 H -0.271 1.271 25 H -0.233 1.233 26 O -0.208 6.208 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.166 0.834 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.393 0.607 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.365 25.589 0.023 36.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.230 6.230 3 C 0.115 3.885 4 C -0.230 4.230 5 C -0.059 4.059 6 C -0.173 4.173 7 C -0.071 4.071 8 C -0.102 4.102 9 C 0.002 3.998 10 N -0.124 5.124 11 N -0.162 5.162 12 C -0.199 4.199 13 S 0.380 5.620 14 C -0.289 4.289 15 C 0.253 3.747 16 O -0.493 6.493 17 N -0.210 5.210 18 C -0.461 4.461 19 H 0.084 0.916 20 C -0.206 4.206 21 N -0.561 5.561 22 Si 0.777 3.223 23 H -0.180 1.180 24 H -0.196 1.196 25 H -0.157 1.157 26 O -0.090 6.090 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.125 0.875 30 H 0.183 0.817 31 H 0.189 0.811 32 H 0.182 0.818 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.229 0.771 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.213 24.986 0.020 35.497 hybrid contribution -0.718 -0.845 -0.002 1.109 sum -25.932 24.140 0.018 35.429 Atomic orbital electron populations 1.23431 0.76123 1.05474 1.02894 1.86347 1.23624 1.26131 1.86881 1.19140 0.89875 0.86416 0.93117 1.21564 1.01730 0.90900 1.08797 1.21709 0.94757 0.98114 0.91284 1.21396 0.94239 0.98605 1.03089 1.21345 1.01264 0.89931 0.94596 1.16854 0.88789 0.87485 1.17084 1.25891 0.77545 0.96520 0.99833 1.74557 1.22458 0.97748 1.17588 1.74878 0.94216 1.26954 1.20121 1.30610 1.04710 0.80838 1.03785 1.86826 0.85487 0.99521 1.90194 1.23701 1.00506 0.93865 1.10871 1.19415 0.89285 0.82760 0.83266 1.90599 1.31775 1.70613 1.56327 1.41852 1.08328 1.04994 1.65795 1.19040 0.86388 0.89681 1.50973 0.91616 1.26058 1.02693 0.96289 0.95571 1.69775 1.29746 1.07799 1.48762 0.85470 0.77629 0.79058 0.80151 1.18005 1.19630 1.15660 1.84981 1.25132 1.27393 1.71447 0.90702 0.90706 0.87500 0.81671 0.81111 0.81824 0.84075 0.84244 0.84168 0.77051 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.86 8.83 -91.60 -0.81 -7.67 16 3 C 0.16 3.14 6.70 22.78 0.15 3.29 16 4 C -0.21 -2.24 9.03 22.33 0.20 -2.04 16 5 C -0.04 -0.28 10.03 22.31 0.22 -0.06 16 6 C -0.16 -1.44 10.03 22.24 0.22 -1.22 16 7 C -0.05 -0.83 9.72 22.52 0.22 -0.61 16 8 C -0.10 -2.26 5.88 -20.02 -0.12 -2.37 16 9 C 0.21 6.44 7.96 87.29 0.70 7.14 16 10 N -0.28 -9.50 10.73 -166.18 -1.78 -11.28 16 11 N -0.31 -10.77 11.61 -171.88 -2.00 -12.77 16 12 C 0.12 3.83 8.53 130.33 1.11 4.94 16 13 S 0.15 4.95 21.45 -56.49 -1.21 3.74 16 14 C -0.14 -4.55 5.71 71.23 0.41 -4.15 16 15 C 0.47 20.82 7.80 87.66 0.68 21.50 16 16 O -0.61 -32.39 15.44 -3.05 -0.05 -32.44 16 17 N -0.57 -26.50 5.09 -306.98 -1.56 -28.06 16 18 C -0.33 -18.93 10.16 84.04 0.85 -18.08 16 19 H 0.07 4.42 7.39 -2.91 -0.02 4.40 16 20 C -0.01 -0.30 5.50 84.93 0.47 0.17 16 21 N -0.92 -54.15 13.96 21.66 0.30 -53.85 16 22 Si 0.96 38.23 27.74 68.60 1.90 40.13 16 23 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 26 O -0.21 -6.43 10.70 -15.05 -0.16 -6.59 16 27 H 0.07 0.49 7.66 -2.39 -0.02 0.48 16 28 H 0.07 0.49 7.66 -2.39 -0.02 0.48 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.17 0.76 6.30 -2.91 -0.02 0.74 16 31 H 0.17 -0.08 8.06 -2.91 -0.02 -0.10 16 32 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.14 2.09 7.93 -2.91 -0.02 2.07 16 34 H 0.14 4.03 8.14 -2.40 -0.02 4.02 16 35 H 0.14 4.03 8.14 -2.40 -0.02 4.01 16 36 H 0.39 15.30 5.76 -92.71 -0.53 14.76 16 37 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -80.07 344.68 1.42 -78.65 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.55 Total: 20.36 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 6.23 Total: 9.78 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -5.04 Total: -105.97 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -1.02 Total: -46.70 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.13 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -1.21 Total: 3.74 kcal Total: -80.07 1.42 -78.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488127701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.368 kcal (2) G-P(sol) polarization free energy of solvation -80.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds