Wall clock time and date at job start Tue Mar 31 2020 18:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47228 * 57.60290 * 3 2 1 5 5 C 1.46496 * 120.00452 * 275.00271 * 4 3 2 6 6 H 1.08997 * 110.01497 * 179.30187 * 5 4 3 7 7 C 1.53868 * 110.03032 * 57.91562 * 5 4 3 8 8 C 1.54194 * 108.69391 * 193.57876 * 7 5 4 9 9 S 1.82920 * 105.10882 * 27.83496 * 8 7 5 10 10 O 1.42101 * 109.35220 * 244.51870 * 9 8 7 11 11 O 1.42097 * 109.47373 * 111.35112 * 9 8 7 12 12 C 1.55051 * 110.02407 * 300.67378 * 5 4 3 13 13 S 1.65608 * 119.99727 * 95.00035 * 4 3 2 14 14 O 1.42102 * 104.27540 * 333.92806 * 13 4 3 15 15 O 1.42095 * 104.27707 * 206.07167 * 13 4 3 16 16 C 1.81396 * 104.44869 * 89.99966 * 13 4 3 17 17 C 1.53004 * 109.47142 * 180.02562 * 16 13 4 18 18 C 1.50701 * 109.47211 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99694 * 180.27574 * 18 17 16 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 17 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 17 23 23 H 1.48504 * 109.47266 * 60.00049 * 22 20 18 24 24 H 1.48504 * 109.46970 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47383 * 299.99456 * 22 20 18 26 26 H 4.40640 * 5.51463 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.46890 * 297.60326 * 3 2 1 28 28 H 1.09002 * 109.46566 * 177.60748 * 3 2 1 29 29 H 1.09005 * 109.64768 * 313.38372 * 7 5 4 30 30 H 1.09001 * 109.64789 * 73.67657 * 7 5 4 31 31 H 1.09004 * 110.27209 * 268.94422 * 8 7 5 32 32 H 1.08996 * 110.42913 * 146.80626 * 8 7 5 33 33 H 1.08998 * 110.79345 * 279.99828 * 12 5 4 34 34 H 1.09007 * 110.78972 * 43.26701 * 12 5 4 35 35 H 1.09000 * 109.47615 * 59.99959 * 16 13 4 36 36 H 1.09007 * 109.47380 * 299.99639 * 16 13 4 37 37 H 1.09000 * 109.47211 * 59.99329 * 17 16 13 38 38 H 1.09007 * 109.46376 * 299.99872 * 17 16 13 39 39 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7391 -1.1662 5 6 3.2752 -2.1960 -1.1034 6 1 3.6370 -2.5774 -2.0582 7 6 1.9223 -2.8415 -0.7566 8 6 2.1631 -4.3129 -0.3632 9 16 3.8637 -4.3545 0.3091 10 8 4.6824 -5.1571 -0.5304 11 8 3.8149 -4.6119 1.7057 12 6 4.2578 -2.5862 0.0308 13 16 3.5282 0.0715 -2.5557 14 8 2.7362 1.2505 -2.5097 15 8 3.3498 -0.8911 -3.5855 16 6 5.2855 0.4771 -2.3608 17 6 5.7733 1.2378 -3.5955 18 6 7.2333 1.5742 -3.4339 19 1 7.7605 1.2757 -2.5398 20 6 7.8945 2.2684 -4.4248 21 7 7.2525 2.6322 -5.5134 22 14 9.7023 2.6922 -4.2210 23 1 10.4901 1.4422 -4.0720 24 1 10.1745 3.4347 -5.4173 25 1 9.8798 3.5363 -3.0122 26 1 -1.0499 -0.0003 -0.0001 27 1 3.0095 -0.4754 0.9107 28 1 3.0088 1.0276 -0.0429 29 1 1.4656 -2.3097 0.0782 30 1 1.2619 -2.7962 -1.6226 31 1 2.0870 -4.9556 -1.2403 32 1 1.4477 -4.6253 0.3974 33 1 5.2913 -2.4666 -0.2944 34 1 4.0658 -1.9981 0.9283 35 1 5.8604 -0.4422 -2.2494 36 1 5.4189 1.0987 -1.4754 37 1 5.1983 2.1571 -3.7066 38 1 5.6397 0.6165 -4.4812 39 1 7.7175 3.1209 -6.2103 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490652270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:06 Heat of formation + Delta-G solvation = -112.522788 kcal Electronic energy + Delta-G solvation = -25349.625505 eV Core-core repulsion = 21512.530299 eV Total energy + Delta-G solvation = -3837.095206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.43289 -38.30849 -38.06927 -37.07045 -37.03983 -35.89228 -35.14007 -33.32469 -33.11328 -30.43535 -28.03343 -27.59787 -25.63593 -23.53610 -22.20485 -20.47195 -19.80134 -19.39263 -18.99707 -18.50953 -17.93104 -17.32093 -17.09436 -16.97005 -16.59489 -16.51295 -15.91127 -15.52062 -15.27508 -15.09197 -14.94058 -14.47311 -14.28043 -13.94032 -13.74423 -13.52842 -13.27482 -13.23187 -13.12892 -13.08472 -12.97400 -12.89933 -12.83133 -12.77915 -12.22816 -12.17306 -12.10543 -11.83684 -11.75014 -11.45054 -11.28976 -11.14876 -10.94661 -10.63155 -10.33616 -8.25398 -6.39296 -0.97792 -0.77938 1.34377 1.42352 1.45094 1.53121 1.65467 1.95933 2.12550 2.38741 2.62017 2.79844 3.03205 3.08478 3.11938 3.28736 3.48613 3.61685 3.64813 3.84660 3.92210 4.00806 4.09226 4.11623 4.42544 4.53905 4.68517 4.73828 4.76989 4.87502 5.04191 5.06972 5.15715 5.25700 5.28565 5.40283 5.69014 6.06220 6.73835 6.74626 7.31294 8.86583 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.003775 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.392398 B = 7414.865593 C = 8722.424145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.232 4.232 3 C 0.213 3.787 4 N -0.973 5.973 5 C 0.133 3.867 6 H 0.122 0.878 7 C -0.128 4.128 8 C -0.568 4.568 9 S 2.402 3.598 10 O -0.976 6.976 11 O -0.968 6.968 12 C -0.605 4.605 13 S 2.603 3.397 14 O -0.984 6.984 15 O -0.989 6.989 16 C -0.587 4.587 17 C 0.019 3.981 18 C -0.538 4.538 19 H 0.079 0.921 20 C -0.002 4.002 21 N -0.935 5.935 22 Si 0.971 3.029 23 H -0.264 1.264 24 H -0.286 1.286 25 H -0.262 1.262 26 H 0.242 0.758 27 H 0.147 0.853 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.154 0.846 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.176 0.824 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.006 0.994 38 H 0.005 0.995 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.020 -11.435 16.306 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.234 4.234 3 C 0.089 3.911 4 N -0.808 5.808 5 C 0.025 3.975 6 H 0.140 0.860 7 C -0.168 4.168 8 C -0.700 4.700 9 S 2.588 3.412 10 O -0.973 6.973 11 O -0.965 6.965 12 C -0.736 4.736 13 S 2.702 3.298 14 O -0.974 6.974 15 O -0.979 6.979 16 C -0.720 4.720 17 C -0.019 4.019 18 C -0.577 4.577 19 H 0.097 0.903 20 C -0.201 4.201 21 N -0.574 5.574 22 Si 0.795 3.205 23 H -0.188 1.188 24 H -0.212 1.212 25 H -0.187 1.187 26 H 0.258 0.742 27 H 0.165 0.835 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.114 0.886 31 H 0.172 0.828 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.194 0.806 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.048 -11.924 15.834 23.196 hybrid contribution 0.676 1.117 -0.642 1.455 sum -11.372 -10.807 15.192 21.838 Atomic orbital electron populations 1.25708 0.96883 0.99574 0.98037 1.23854 0.95692 1.01448 1.02381 1.18581 0.83943 0.98459 0.90083 1.57458 1.79165 1.14008 1.30200 1.21813 0.95032 0.80503 1.00114 0.85988 1.22360 0.97116 0.91561 1.05787 1.30356 1.21217 1.03796 1.14641 1.08461 0.79631 0.78506 0.74599 1.93600 1.67264 1.66844 1.69584 1.93580 1.87143 1.84419 1.31379 1.31188 1.09861 1.23514 1.09065 1.05165 0.78240 0.73187 0.73193 1.93527 1.67655 1.50294 1.85922 1.93499 1.86514 1.61640 1.56246 1.30406 1.21312 1.11618 1.08649 1.18827 0.97987 0.94289 0.90845 1.21492 0.95018 1.36373 1.04788 0.90337 1.26084 1.03795 0.95477 0.94739 1.70089 1.38977 1.39609 1.08762 0.85405 0.78450 0.78802 0.77855 1.18843 1.21203 1.18679 0.74176 0.83520 0.86816 0.87343 0.88587 0.82817 0.81561 0.82030 0.80632 0.83478 0.83179 0.97561 0.97667 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 19.20 74.32 1.43 -1.68 16 2 C -0.23 -4.43 11.31 31.13 0.35 -4.07 16 3 C 0.21 3.45 5.30 84.57 0.45 3.90 16 4 N -0.97 -20.22 2.70 -498.02 -1.34 -21.56 16 5 C 0.13 2.21 2.91 45.99 0.13 2.34 16 6 H 0.12 2.23 6.90 -2.39 -0.02 2.21 16 7 C -0.13 -1.59 5.45 31.29 0.17 -1.42 16 8 C -0.57 -4.91 7.26 72.39 0.53 -4.38 16 9 S 2.40 34.22 6.10 -56.49 -0.34 33.87 16 10 O -0.98 -22.73 18.15 -127.47 -2.31 -25.04 16 11 O -0.97 -19.57 18.15 -127.47 -2.31 -21.88 16 12 C -0.60 -6.67 6.79 72.68 0.49 -6.17 16 13 S 2.60 84.76 5.36 -56.49 -0.30 84.45 16 14 O -0.98 -38.13 16.98 -127.65 -2.17 -40.30 16 15 O -0.99 -37.95 16.58 -127.65 -2.12 -40.07 16 16 C -0.59 -20.04 6.12 71.98 0.44 -19.60 16 17 C 0.02 0.97 4.98 29.85 0.15 1.12 16 18 C -0.54 -28.70 9.11 25.60 0.23 -28.46 16 19 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 20 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 21 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 22 Si 0.97 42.30 29.54 68.60 2.03 44.33 16 23 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 24 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 H 0.24 2.36 7.80 -4.42 -0.03 2.32 16 27 H 0.15 1.04 6.28 -2.39 -0.01 1.02 16 28 H 0.11 1.84 7.61 -2.39 -0.02 1.82 16 29 H 0.11 1.08 5.78 -2.38 -0.01 1.06 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.15 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.17 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.18 0.88 6.32 -2.38 -0.02 0.86 16 35 H 0.15 4.22 8.14 -2.39 -0.02 4.20 16 36 H 0.15 4.22 8.14 -2.39 -0.02 4.20 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 39 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -88.53 353.93 -2.70 -91.23 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.06 Total: 8.75 kcal Atomic # 6 Polarization: -62.93 SS G_CDS: 4.83 Total: -58.10 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -1.06 Total: -77.24 kcal Atomic # 8 Polarization: -118.38 SS G_CDS: -8.91 Total: -127.29 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 118.98 SS G_CDS: -0.65 Total: 118.33 kcal Total: -88.53 -2.70 -91.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490652270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.296 kcal (2) G-P(sol) polarization free energy of solvation -88.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds