Wall clock time and date at job start Tue Mar 31 2020 18:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.83369 * 2 1 4 4 S 1.83817 * 110.65237 * 123.31147 * 2 1 3 5 5 C 1.84214 * 93.98940 * 85.14198 * 4 2 1 6 6 C 1.54557 * 101.32599 * 32.09814 * 5 4 2 7 7 H 1.08997 * 108.63051 * 97.78541 * 6 5 4 8 8 C 1.50705 * 108.75193 * 215.93308 * 6 5 4 9 9 O 1.20825 * 119.99881 * 91.83518 * 8 6 5 10 10 O 1.34234 * 120.00249 * 271.82685 * 8 6 5 11 11 N 1.45493 * 113.16722 * 336.90176 * 6 5 4 12 12 S 1.65600 * 122.43620 * 178.92597 * 11 6 5 13 13 O 1.42106 * 104.27393 * 348.35180 * 12 11 6 14 14 O 1.42095 * 104.27789 * 220.49473 * 12 11 6 15 15 C 1.81404 * 104.44944 * 104.41842 * 12 11 6 16 16 C 1.53005 * 109.47069 * 173.09859 * 15 12 11 17 17 C 1.50701 * 115.54927 * 293.47975 * 16 15 12 18 18 H 1.07997 * 120.00297 * 85.76960 * 17 16 15 19 19 C 1.37874 * 119.99425 * 265.48851 * 17 16 15 20 20 N 1.31509 * 120.00785 * 2.38873 * 19 17 16 21 21 Si 1.86808 * 119.99485 * 182.38671 * 19 17 16 22 22 H 1.48498 * 109.47200 * 90.00560 * 21 19 17 23 23 H 1.48506 * 109.46897 * 210.00404 * 21 19 17 24 24 H 1.48495 * 109.47036 * 329.99949 * 21 19 17 25 25 C 1.52998 * 117.49328 * 79.14546 * 16 15 12 26 26 C 1.52995 * 117.49836 * 147.80536 * 16 15 12 27 27 H 1.08997 * 109.46855 * 183.39300 * 1 2 3 28 28 H 1.09000 * 109.47298 * 303.39340 * 1 2 3 29 29 H 1.08996 * 109.47099 * 63.39297 * 1 2 3 30 30 H 1.09005 * 111.05441 * 274.08484 * 5 4 2 31 31 H 1.09005 * 111.08750 * 150.12556 * 5 4 2 32 32 H 0.96691 * 117.00139 * 180.02562 * 10 8 6 33 33 H 1.09000 * 109.46575 * 53.10407 * 15 12 11 34 34 H 1.08990 * 109.47295 * 293.10246 * 15 12 11 35 35 H 0.97000 * 120.00587 * 185.02732 * 20 19 17 36 36 H 1.09000 * 117.49882 * 214.99937 * 25 16 15 37 37 H 1.08996 * 117.50078 * 0.02562 * 25 16 15 38 38 H 1.09005 * 117.49735 * 359.97438 * 26 16 15 39 39 H 1.08994 * 117.50095 * 144.97940 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9177 1.0187 0.0000 4 16 2.1784 -0.9446 1.4374 5 6 2.0779 -2.5709 0.5779 6 6 2.3534 -2.1581 -0.8858 7 1 3.4053 -2.3392 -1.1066 8 6 1.5138 -3.0157 -1.7973 9 8 0.4162 -2.6417 -2.1369 10 8 1.9853 -4.1950 -2.2319 11 7 2.0537 -0.7595 -1.1522 12 16 2.2894 -0.0681 -2.6384 13 8 3.0495 -1.0306 -3.3561 14 8 2.8219 1.2166 -2.3467 15 6 0.6225 0.0778 -3.3392 16 6 0.6875 0.8640 -4.6502 17 6 1.0797 2.3133 -4.5201 18 1 2.1233 2.5907 -4.5012 19 6 0.1061 3.2855 -4.4312 20 7 -1.1639 2.9447 -4.4124 21 14 0.5912 5.0870 -4.3371 22 1 0.6764 5.6490 -5.7090 23 1 -0.4290 5.8343 -3.5586 24 1 1.9116 5.2099 -3.6689 25 6 1.1537 0.1154 -5.9004 26 6 -0.3196 0.5000 -5.7429 27 1 -0.3633 -1.0259 0.0608 28 1 -0.3634 0.5656 0.8580 29 1 -0.3633 0.4602 -0.9188 30 1 1.0846 -3.0077 0.6812 31 1 2.8440 -3.2552 0.9426 32 1 1.4107 -4.7095 -2.8149 33 1 -0.0236 0.6003 -2.6339 34 1 0.2210 -0.9170 -3.5317 35 1 -1.8503 3.6300 -4.4235 36 1 1.7440 0.6711 -6.6290 37 1 1.4137 -0.9372 -5.7891 38 1 -1.0281 -0.3000 -5.5280 39 1 -0.6987 1.3087 -6.3676 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519163030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:54 Heat of formation + Delta-G solvation = -140.645741 kcal Electronic energy + Delta-G solvation = -26887.662758 eV Core-core repulsion = 23049.348049 eV Total energy + Delta-G solvation = -3838.314709 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65029 -38.67752 -38.55768 -38.25153 -37.12976 -36.98054 -34.06687 -33.27890 -30.65435 -29.99341 -27.51778 -26.54765 -24.08129 -23.04841 -22.70688 -21.32764 -20.09490 -19.50341 -19.15293 -18.58313 -18.13872 -17.84311 -16.90298 -16.83035 -16.54929 -16.51690 -15.77113 -15.67650 -15.38139 -14.91733 -14.65204 -14.41368 -14.38323 -13.90632 -13.72456 -13.46268 -13.31739 -13.29305 -13.17828 -13.02741 -12.87448 -12.70956 -12.63815 -12.50292 -12.42362 -12.32001 -12.05898 -11.91631 -11.60404 -11.24496 -10.97006 -10.61297 -10.49694 -9.94003 -8.94355 -8.18132 -6.34994 -0.88988 0.51086 0.72230 1.00086 1.37257 1.39888 1.40810 1.51995 1.95869 2.39299 2.66424 2.90846 3.05498 3.22632 3.31609 3.68149 3.74965 3.84335 3.91960 3.99828 4.08962 4.11285 4.37574 4.43027 4.46043 4.50141 4.62068 4.77039 4.81760 4.88932 5.03045 5.08961 5.22838 5.42106 5.48825 5.58317 5.70772 6.19729 6.72950 6.83554 7.36897 8.87841 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.005504 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.588459 B = 5086.365229 C = 5957.747925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.180 3.820 3 H 0.124 0.876 4 S -0.234 6.234 5 C -0.049 4.049 6 C 0.146 3.854 7 H 0.135 0.865 8 C 0.465 3.535 9 O -0.524 6.524 10 O -0.495 6.495 11 N -0.990 5.990 12 S 2.615 3.385 13 O -0.980 6.980 14 O -0.968 6.968 15 C -0.540 4.540 16 C 0.004 3.996 17 C -0.526 4.526 18 H 0.052 0.948 19 C 0.040 3.960 20 N -0.893 5.893 21 Si 0.936 3.064 22 H -0.270 1.270 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.207 4.207 26 C -0.121 4.121 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.121 0.879 31 H 0.171 0.829 32 H 0.432 0.568 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.265 0.735 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.958 -14.675 10.859 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.035 4.035 3 H 0.141 0.859 4 S -0.007 6.007 5 C -0.198 4.198 6 C 0.036 3.964 7 H 0.153 0.847 8 C 0.304 3.696 9 O -0.414 6.414 10 O -0.308 6.308 11 N -0.827 5.827 12 S 2.715 3.285 13 O -0.971 6.971 14 O -0.958 6.958 15 C -0.673 4.673 16 C 0.002 3.998 17 C -0.563 4.563 18 H 0.070 0.930 19 C -0.163 4.163 20 N -0.530 5.530 21 Si 0.761 3.239 22 H -0.195 1.195 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.245 4.245 26 C -0.160 4.160 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.189 0.811 32 H 0.295 0.705 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.005 -13.695 11.908 18.585 hybrid contribution -1.495 0.529 -1.803 2.401 sum 2.510 -13.166 10.105 16.786 Atomic orbital electron populations 1.22508 0.91190 1.04589 1.03948 1.23880 0.97716 0.98309 0.83611 0.85850 1.88130 1.86078 1.05070 1.21411 1.24626 1.09774 0.97156 0.88288 1.20871 1.01141 0.78908 0.95512 0.84734 1.23906 0.85407 0.81151 0.79101 1.90760 1.22232 1.72247 1.56122 1.84447 1.52225 1.30943 1.63200 1.58641 1.80620 1.16439 1.27023 1.04935 0.78174 0.72974 0.72450 1.93476 1.69290 1.62187 1.72146 1.93521 1.77641 1.41897 1.82777 1.30004 1.20363 1.07840 1.09136 1.18528 1.03613 0.93043 0.84623 1.20715 0.92883 0.90178 1.52512 0.92954 1.25527 0.94910 1.02275 0.93549 1.70085 0.99707 1.34425 1.48746 0.85879 0.78400 0.80896 0.78697 1.19488 1.19916 1.19920 1.23357 0.98927 0.99631 1.02559 1.22361 0.90338 1.00668 1.02635 0.90177 0.88056 0.92394 0.86057 0.81100 0.70543 0.85693 0.85518 0.92566 0.89435 0.89037 0.90149 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 9.70 71.98 0.70 -3.49 16 2 C 0.18 5.00 3.87 86.17 0.33 5.34 16 3 H 0.12 3.75 7.60 -2.39 -0.02 3.73 16 4 S -0.23 -4.96 22.88 -56.49 -1.29 -6.25 16 5 C -0.05 -0.74 7.04 72.51 0.51 -0.23 16 6 C 0.15 3.37 2.78 44.97 0.12 3.49 16 7 H 0.14 2.85 8.06 -2.39 -0.02 2.83 16 8 C 0.47 11.13 6.14 71.24 0.44 11.57 16 9 O -0.52 -15.34 14.98 21.97 0.33 -15.01 16 10 O -0.50 -8.62 13.42 -51.46 -0.69 -9.31 16 11 N -0.99 -30.41 2.54 -480.44 -1.22 -31.63 16 12 S 2.61 107.45 4.88 -56.49 -0.28 107.17 16 13 O -0.98 -41.27 16.55 -127.65 -2.11 -43.38 16 14 O -0.97 -46.79 16.24 -127.65 -2.07 -48.87 16 15 C -0.54 -23.45 5.58 71.98 0.40 -23.05 16 16 C 0.00 0.22 1.52 -52.93 -0.08 0.14 16 17 C -0.53 -29.35 7.83 25.60 0.20 -29.15 16 18 H 0.05 3.05 7.65 -2.91 -0.02 3.03 16 19 C 0.04 2.18 5.37 84.65 0.45 2.64 16 20 N -0.89 -49.32 12.13 21.45 0.26 -49.06 16 21 Si 0.94 43.85 29.54 68.60 2.03 45.88 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 25 C -0.21 -9.27 9.96 30.62 0.30 -8.97 16 26 C -0.12 -5.68 8.88 30.62 0.27 -5.41 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 1.79 5.67 -2.39 -0.01 1.78 16 30 H 0.12 1.50 7.85 -2.38 -0.02 1.48 16 31 H 0.17 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.43 3.99 9.10 -74.06 -0.67 3.31 16 33 H 0.12 5.55 5.75 -2.39 -0.01 5.53 16 34 H 0.13 5.09 6.16 -2.40 -0.01 5.08 16 35 H 0.27 13.88 8.32 -92.71 -0.77 13.11 16 36 H 0.09 3.86 8.14 -2.39 -0.02 3.84 16 37 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 38 H 0.08 3.47 8.14 -2.38 -0.02 3.45 16 39 H 0.07 3.76 7.79 -2.39 -0.02 3.74 16 Total: -1.00 -72.20 345.94 -0.97 -73.17 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.42 Total: 24.42 kcal Atomic # 6 Polarization: -50.78 SS G_CDS: 3.66 Total: -47.12 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -0.96 Total: -80.69 kcal Atomic # 8 Polarization: -112.02 SS G_CDS: -4.55 Total: -116.57 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 102.49 SS G_CDS: -1.57 Total: 100.92 kcal Total: -72.20 -0.97 -73.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519163030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.475 kcal (2) G-P(sol) polarization free energy of solvation -72.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds