Wall clock time and date at job start Tue Mar 31 2020 18:39:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08998 * 110.83772 * 2 1
4 4 S 1.84335 * 110.89757 * 236.53514 * 2 1 3
5 5 C 1.84214 * 93.82686 * 275.43393 * 4 2 1
6 6 C 1.54563 * 101.32673 * 327.58605 * 5 4 2
7 7 H 1.09000 * 108.75392 * 262.12543 * 6 5 4
8 8 C 1.50704 * 108.62646 * 143.97288 * 6 5 4
9 9 O 1.20821 * 119.99878 * 236.44020 * 8 6 5
10 10 O 1.34233 * 119.99876 * 56.44018 * 8 6 5
11 11 N 1.45503 * 113.16175 * 23.09512 * 6 5 4
12 12 S 1.65602 * 122.42932 * 181.07904 * 11 6 5
13 13 O 1.42104 * 104.27340 * 333.92866 * 12 11 6
14 14 O 1.42094 * 104.27726 * 206.07263 * 12 11 6
15 15 C 1.81400 * 104.44777 * 89.99754 * 12 11 6
16 16 C 1.52999 * 109.46948 * 187.74577 * 15 12 11
17 17 C 1.50699 * 115.55308 * 303.33485 * 16 15 12
18 18 H 1.08005 * 119.99352 * 95.08729 * 17 16 15
19 19 C 1.37870 * 120.00317 * 275.08275 * 17 16 15
20 20 N 1.31517 * 120.00015 * 7.30345 * 19 17 16
21 21 Si 1.86798 * 120.00114 * 187.30166 * 19 17 16
22 22 H 1.48497 * 109.47025 * 0.02562 * 21 19 17
23 23 H 1.48494 * 109.47254 * 240.00251 * 21 19 17
24 24 H 1.48506 * 109.47040 * 120.00263 * 21 19 17
25 25 C 1.53001 * 117.49421 * 89.01004 * 16 15 12
26 26 C 1.53000 * 117.49431 * 157.66593 * 16 15 12
27 27 H 1.09004 * 109.46763 * 296.60554 * 1 2 3
28 28 H 1.08995 * 109.47070 * 56.60685 * 1 2 3
29 29 H 1.08997 * 109.47196 * 176.60950 * 1 2 3
30 30 H 1.08998 * 111.05653 * 209.57340 * 5 4 2
31 31 H 1.09005 * 111.04992 * 85.59507 * 5 4 2
32 32 H 0.96698 * 117.00126 * 179.97438 * 10 8 6
33 33 H 1.09002 * 109.46714 * 67.75170 * 15 12 11
34 34 H 1.08997 * 109.47604 * 307.74898 * 15 12 11
35 35 H 0.97006 * 119.99485 * 3.83341 * 20 19 17
36 36 H 1.09002 * 117.49423 * 215.00074 * 25 16 15
37 37 H 1.09004 * 117.50469 * 0.02562 * 25 16 15
38 38 H 1.08996 * 117.50157 * 359.97438 * 26 16 15
39 39 H 1.08999 * 117.49917 * 145.00115 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9178 1.0187 0.0000
4 16 2.1876 -0.9496 -1.4366
5 6 2.0688 -2.5736 -0.5752
6 6 2.3419 -2.1612 0.8891
7 1 3.3905 -2.3522 1.1173
8 6 1.4877 -3.0099 1.7954
9 8 0.7251 -2.4856 2.5722
10 8 1.5742 -4.3483 1.7397
11 7 2.0537 -0.7595 1.1522
12 16 2.2895 -0.0681 2.6384
13 8 2.1757 -1.1515 3.5508
14 8 1.3714 1.0159 2.6702
15 6 3.9962 0.5443 2.5870
16 6 4.4029 1.0381 3.9768
17 6 3.5198 2.1043 4.5720
18 1 2.7189 1.8298 5.2427
19 6 3.7342 3.4302 4.2606
20 7 4.6122 3.7550 3.3368
21 14 2.7777 4.7652 5.1506
22 1 1.8593 4.1420 6.1372
23 1 1.9894 5.5492 4.1663
24 1 3.7245 5.6657 5.8563
25 6 5.0240 0.0193 4.9346
26 6 5.8982 1.1007 4.2946
27 1 -0.3633 0.4603 0.9189
28 1 -0.3633 0.5656 -0.8580
29 1 -0.3633 -1.0258 -0.0608
30 1 2.8305 -3.2648 -0.9359
31 1 1.0720 -3.0015 -0.6821
32 1 1.0069 -4.8503 2.3407
33 1 4.0658 1.3664 1.8746
34 1 4.6622 -0.2614 2.2783
35 1 5.0683 3.0608 2.8358
36 1 4.7938 0.1203 5.9952
37 1 5.1433 -1.0026 4.5744
38 1 6.5921 0.7897 3.5137
39 1 6.2432 1.9130 4.9342
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000519163031.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:39:58
Heat of formation + Delta-G solvation = -144.490369 kcal
Electronic energy + Delta-G solvation = -26772.490485 eV
Core-core repulsion = 22934.009060 eV
Total energy + Delta-G solvation = -3838.481424 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 335.074 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.53436 -38.94161 -38.50713 -38.11115 -37.01358 -36.76721 -34.10956 -33.18055
-30.71081 -29.98613 -27.11052 -26.43721 -24.07665 -23.18311 -22.69377 -21.69409
-20.06053 -19.17480 -19.13751 -18.82025 -18.27548 -17.77251 -17.06511 -16.71185
-16.37768 -15.85093 -15.70177 -15.67927 -15.33012 -15.00224 -14.65185 -14.58577
-14.38236 -14.26075 -13.73408 -13.56439 -13.27945 -13.14148 -13.06767 -12.99624
-12.72816 -12.69428 -12.57376 -12.43170 -12.27347 -12.19030 -12.02308 -11.85946
-11.48865 -11.15799 -10.64526 -10.63203 -10.59792 -10.14398 -8.95588 -8.66923
-6.46261 -0.85007 0.51037 0.84961 1.20216 1.47733 1.50278 1.55671
1.73323 1.99448 2.49112 2.86836 2.94968 3.08433 3.13493 3.29617
3.62656 3.70242 3.76737 3.86500 3.96730 4.07136 4.19139 4.31242
4.35803 4.42445 4.45078 4.55879 4.59983 4.77526 4.78794 4.95378
5.06977 5.10351 5.19077 5.39201 5.62752 5.95756 6.10487 6.59221
6.96041 7.36529 8.73949
Molecular weight = 335.07amu
Principal moments of inertia in cm(-1)
A = 0.015819 B = 0.005118 C = 0.004714
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1769.611460 B = 5469.617485 C = 5938.709461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.188 3.812
3 H 0.119 0.881
4 S -0.243 6.243
5 C -0.045 4.045
6 C 0.144 3.856
7 H 0.149 0.851
8 C 0.456 3.544
9 O -0.514 6.514
10 O -0.499 6.499
11 N -0.992 5.992
12 S 2.633 3.367
13 O -0.964 6.964
14 O -0.977 6.977
15 C -0.564 4.564
16 C -0.015 4.015
17 C -0.610 4.610
18 H 0.035 0.965
19 C 0.003 3.997
20 N -0.911 5.911
21 Si 1.093 2.907
22 H -0.283 1.283
23 H -0.277 1.277
24 H -0.267 1.267
25 C -0.178 4.178
26 C -0.153 4.153
27 H 0.055 0.945
28 H 0.102 0.898
29 H 0.069 0.931
30 H 0.172 0.828
31 H 0.118 0.882
32 H 0.428 0.572
33 H 0.117 0.883
34 H 0.143 0.857
35 H 0.272 0.728
36 H 0.080 0.920
37 H 0.105 0.895
38 H 0.100 0.900
39 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.418 -16.046 -11.652 19.977
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.027 4.027
3 H 0.137 0.863
4 S -0.016 6.016
5 C -0.194 4.194
6 C 0.035 3.965
7 H 0.166 0.834
8 C 0.295 3.705
9 O -0.401 6.401
10 O -0.313 6.313
11 N -0.829 5.829
12 S 2.730 3.270
13 O -0.954 6.954
14 O -0.967 6.967
15 C -0.697 4.697
16 C -0.017 4.017
17 C -0.648 4.648
18 H 0.053 0.947
19 C -0.200 4.200
20 N -0.545 5.545
21 Si 0.916 3.084
22 H -0.208 1.208
23 H -0.203 1.203
24 H -0.192 1.192
25 C -0.215 4.215
26 C -0.192 4.192
27 H 0.073 0.927
28 H 0.120 0.880
29 H 0.088 0.912
30 H 0.190 0.810
31 H 0.136 0.864
32 H 0.290 0.710
33 H 0.136 0.864
34 H 0.161 0.839
35 H 0.082 0.918
36 H 0.098 0.902
37 H 0.123 0.877
38 H 0.118 0.882
39 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -2.818 -13.665 -12.020 18.416
hybrid contribution -0.134 -1.767 1.491 2.316
sum -2.952 -15.432 -10.529 18.913
Atomic orbital electron populations
1.22345 0.91732 1.03675 1.03848 1.23831 0.97734 0.97716 0.83379
0.86323 1.88286 1.85438 1.05535 1.22390 1.24619 1.09773 0.96728
0.88313 1.20938 1.00812 0.78950 0.95842 0.83407 1.23854 0.82057
0.82527 0.82111 1.90821 1.37841 1.74331 1.37125 1.84391 1.65566
1.17939 1.63385 1.58737 1.79623 1.15635 1.28908 1.04484 0.77556
0.73087 0.71826 1.93528 1.86650 1.53734 1.61496 1.93476 1.61390
1.56955 1.84882 1.30063 1.22780 1.10872 1.05939 1.18621 0.94999
0.98353 0.89711 1.21612 1.17667 0.93494 1.31994 0.94691 1.26787
0.96609 1.00702 0.95939 1.70796 1.25202 1.37638 1.20908 0.83260
0.75498 0.73941 0.75718 1.20808 1.20293 1.19196 1.23102 1.05129
0.94596 0.98673 1.22756 0.93285 1.00228 1.02948 0.92655 0.87978
0.91157 0.80996 0.86356 0.70974 0.86427 0.83909 0.91780 0.90164
0.87719 0.88214 0.91337
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.06 9.68 71.98 0.70 -3.36 16
2 C 0.19 5.11 3.48 86.17 0.30 5.41 16
3 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16
4 S -0.24 -4.82 22.92 -56.49 -1.29 -6.11 16
5 C -0.05 -0.62 6.91 72.51 0.50 -0.12 16
6 C 0.14 3.14 3.18 44.97 0.14 3.29 16
7 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16
8 C 0.46 11.64 6.71 71.24 0.48 12.12 16
9 O -0.51 -18.77 13.96 29.81 0.42 -18.35 16
10 O -0.50 -8.08 13.27 -51.44 -0.68 -8.76 16
11 N -0.99 -29.69 2.61 -479.62 -1.25 -30.95 16
12 S 2.63 109.73 4.70 -56.49 -0.27 109.47 16
13 O -0.96 -43.54 13.89 -118.26 -1.64 -45.19 16
14 O -0.98 -49.21 16.09 -127.65 -2.05 -51.27 16
15 C -0.56 -22.64 6.00 71.98 0.43 -22.21 16
16 C -0.01 -0.70 0.97 -52.93 -0.05 -0.75 16
17 C -0.61 -34.68 7.75 25.60 0.20 -34.48 16
18 H 0.03 2.11 7.82 -2.91 -0.02 2.09 16
19 C 0.00 0.18 5.38 84.65 0.46 0.63 16
20 N -0.91 -52.55 13.48 21.44 0.29 -52.26 16
21 Si 1.09 52.15 29.91 68.60 2.05 54.20 16
22 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16
23 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16
24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16
25 C -0.18 -7.45 9.93 30.62 0.30 -7.15 16
26 C -0.15 -6.60 8.94 30.62 0.27 -6.32 16
27 H 0.05 1.81 7.35 -2.38 -0.02 1.79 16
28 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16
29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16
30 H 0.17 1.09 8.14 -2.39 -0.02 1.07 16
31 H 0.12 1.38 7.84 -2.38 -0.02 1.37 16
32 H 0.43 4.06 9.10 -74.06 -0.67 3.39 16
33 H 0.12 4.89 7.49 -2.39 -0.02 4.87 16
34 H 0.14 4.34 8.10 -2.39 -0.02 4.32 16
35 H 0.27 15.20 6.12 -92.70 -0.57 14.63 16
36 H 0.08 3.46 8.14 -2.39 -0.02 3.45 16
37 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16
38 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16
39 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16
Total: -1.00 -80.90 348.21 -0.10 -80.99
By element:
Atomic # 1 Polarization: 20.56 SS G_CDS: 0.61 Total: 21.17 kcal
Atomic # 6 Polarization: -56.67 SS G_CDS: 3.73 Total: -52.94 kcal
Atomic # 7 Polarization: -82.24 SS G_CDS: -0.96 Total: -83.20 kcal
Atomic # 8 Polarization: -119.61 SS G_CDS: -3.96 Total: -123.57 kcal
Atomic # 14 Polarization: 52.15 SS G_CDS: 2.05 Total: 54.20 kcal
Atomic # 16 Polarization: 104.91 SS G_CDS: -1.56 Total: 103.35 kcal
Total: -80.90 -0.10 -80.99 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000519163031.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.497 kcal
(2) G-P(sol) polarization free energy of solvation -80.897 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.393 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.994 kcal
(6) G-S(sol) free energy of system = (1) + (5) -144.490 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds