Wall clock time and date at job start Tue Mar 31 2020 18:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.84197 * 2 1 4 4 S 1.84337 * 110.76430 * 123.54277 * 2 1 3 5 5 C 1.84221 * 93.82541 * 151.92780 * 4 2 1 6 6 C 1.54561 * 101.32680 * 327.58606 * 5 4 2 7 7 H 1.09005 * 108.75232 * 262.13012 * 6 5 4 8 8 C 1.50694 * 108.63092 * 143.97690 * 6 5 4 9 9 O 1.20825 * 119.99951 * 236.44438 * 8 6 5 10 10 O 1.34228 * 120.00073 * 56.43200 * 8 6 5 11 11 N 1.45503 * 113.16519 * 23.09264 * 6 5 4 12 12 S 1.65599 * 122.43432 * 181.07884 * 11 6 5 13 13 O 1.42103 * 104.27321 * 333.93286 * 12 11 6 14 14 O 1.42098 * 104.27760 * 206.07470 * 12 11 6 15 15 C 1.81401 * 104.44766 * 90.00121 * 12 11 6 16 16 C 1.53002 * 109.46960 * 174.66102 * 15 12 11 17 17 C 1.50696 * 115.55242 * 65.22199 * 16 15 12 18 18 H 1.07999 * 120.00039 * 264.78668 * 17 16 15 19 19 C 1.37881 * 119.99947 * 84.77762 * 17 16 15 20 20 N 1.31510 * 120.00014 * 352.22803 * 19 17 16 21 21 Si 1.86798 * 119.99877 * 172.22160 * 19 17 16 22 22 H 1.48500 * 109.47059 * 90.00163 * 21 19 17 23 23 H 1.48492 * 109.47286 * 210.00232 * 21 19 17 24 24 H 1.48503 * 109.47462 * 330.00750 * 21 19 17 25 25 C 1.52997 * 117.49719 * 279.54669 * 16 15 12 26 26 C 1.52998 * 117.49585 * 210.89331 * 16 15 12 27 27 H 1.08994 * 109.47542 * 183.39426 * 1 2 3 28 28 H 1.09003 * 109.46991 * 303.39333 * 1 2 3 29 29 H 1.08998 * 109.47075 * 63.39006 * 1 2 3 30 30 H 1.08994 * 111.05185 * 209.57179 * 5 4 2 31 31 H 1.09001 * 111.04852 * 85.59395 * 5 4 2 32 32 H 0.96697 * 117.00217 * 179.97438 * 10 8 6 33 33 H 1.09000 * 109.47215 * 294.66387 * 15 12 11 34 34 H 1.08999 * 109.46929 * 54.65727 * 15 12 11 35 35 H 0.96997 * 119.99658 * 185.02611 * 20 19 17 36 36 H 1.09002 * 117.50044 * 0.02562 * 25 16 15 37 37 H 1.09002 * 117.49564 * 145.02231 * 25 16 15 38 38 H 1.09000 * 117.49901 * 214.97887 * 26 16 15 39 39 H 1.09005 * 117.50109 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 16 2.1835 -0.9524 1.4366 5 6 3.7436 -1.4191 0.5752 6 6 3.2611 -1.5275 -0.8892 7 1 3.0665 -2.5755 -1.1173 8 6 4.3580 -1.0313 -1.7955 9 8 4.1393 -0.1320 -2.5722 10 8 5.5780 -1.5881 -1.7397 11 7 2.0536 -0.7596 -1.1523 12 16 1.3235 -0.7339 -2.6384 13 8 2.3765 -1.0130 -3.5509 14 8 0.6370 0.5098 -2.6702 15 6 0.1440 -2.1111 -2.5871 16 6 -0.6953 -2.1117 -3.8664 17 6 0.0618 -2.3854 -5.1403 18 1 0.4175 -1.5637 -5.7443 19 6 0.3006 -3.6848 -5.5347 20 7 0.0052 -4.6813 -4.7291 21 14 1.0437 -4.0297 -7.2135 22 1 2.5244 -4.0534 -7.1040 23 1 0.5627 -5.3450 -7.7070 24 1 0.6348 -2.9646 -8.1642 25 6 -1.8723 -1.1369 -3.9396 26 6 -2.1293 -2.6363 -3.7702 27 1 -0.3634 -1.0258 0.0608 28 1 -0.3633 0.5656 0.8580 29 1 -0.3633 0.4603 -0.9188 30 1 4.1185 -2.3769 0.9359 31 1 4.4981 -0.6398 0.6821 32 1 6.2490 -1.2365 -2.3407 33 1 0.6877 -3.0525 -2.5088 34 1 -0.5107 -1.9967 -1.7231 35 1 0.2396 -5.5898 -4.9752 36 1 -2.0485 -0.4949 -3.0765 37 1 -2.0992 -0.6938 -4.9093 38 1 -2.5253 -3.1790 -4.6286 39 1 -2.4747 -2.9814 -2.7957 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519163033.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:05 Heat of formation + Delta-G solvation = -110.882801 kcal Electronic energy + Delta-G solvation = -26829.271547 eV Core-core repulsion = 22992.247456 eV Total energy + Delta-G solvation = -3837.024091 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 335.074 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.35860 -37.37921 -36.85260 -36.51771 -35.78212 -35.08015 -32.52544 -32.08769 -29.12040 -28.27582 -25.61770 -25.46267 -23.03715 -21.53319 -21.26079 -19.48676 -18.55545 -18.07796 -17.61028 -16.96515 -16.72662 -16.35669 -15.69472 -15.27125 -15.00764 -14.82731 -14.64509 -14.18902 -14.04841 -13.77365 -13.29846 -13.09505 -12.88734 -12.43465 -12.38938 -11.95136 -11.86823 -11.72987 -11.71922 -11.41110 -11.21105 -11.11278 -10.97617 -10.88038 -10.71005 -10.55239 -10.46110 -10.15982 -10.08369 -9.78541 -9.24933 -9.00356 -8.60827 -8.15605 -8.05543 -6.18364 -4.28913 0.77313 1.45713 1.80512 2.33080 2.71911 3.18033 3.27632 3.33263 3.38879 3.94867 4.33722 4.47430 4.57960 4.68954 4.72497 4.96079 5.05348 5.08814 5.12805 5.19569 5.20151 5.33915 5.55290 5.64449 5.77379 5.83832 6.12040 6.21103 6.27377 6.33697 6.54855 6.59891 6.67101 6.93852 7.18309 7.34515 7.76508 7.97783 8.15316 8.76855 9.42442 10.89148 Molecular weight = 335.07amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.005745 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.808156 B = 4872.403141 C = 5896.561550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.213 3.787 3 H 0.105 0.895 4 S -0.268 6.268 5 C -0.056 4.056 6 C 0.159 3.841 7 H 0.126 0.874 8 C 0.455 3.545 9 O -0.463 6.463 10 O -0.517 6.517 11 N -0.995 5.995 12 S 2.607 3.393 13 O -0.920 6.920 14 O -0.958 6.958 15 C -0.553 4.553 16 C 0.043 3.957 17 C -0.517 4.517 18 H 0.068 0.932 19 C 0.083 3.917 20 N -0.874 5.874 21 Si 0.890 3.110 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.209 4.209 26 C -0.139 4.139 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.104 0.896 32 H 0.411 0.589 33 H 0.133 0.867 34 H 0.101 0.899 35 H 0.263 0.737 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.067 4.283 12.890 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.003 4.003 3 H 0.123 0.877 4 S -0.043 6.043 5 C -0.206 4.206 6 C 0.048 3.952 7 H 0.144 0.856 8 C 0.291 3.709 9 O -0.346 6.346 10 O -0.330 6.330 11 N -0.830 5.830 12 S 2.706 3.294 13 O -0.911 6.911 14 O -0.949 6.949 15 C -0.686 4.686 16 C 0.040 3.960 17 C -0.554 4.554 18 H 0.086 0.914 19 C -0.122 4.122 20 N -0.509 5.509 21 Si 0.717 3.283 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.246 4.246 26 C -0.178 4.178 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.151 0.849 31 H 0.123 0.877 32 H 0.270 0.730 33 H 0.152 0.848 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.420 4.595 13.363 15.135 hybrid contribution 1.112 -0.494 -1.936 2.287 sum 6.533 4.101 11.427 13.787 Atomic orbital electron populations 1.22603 0.90937 1.04916 1.06775 1.23700 0.98011 0.95969 0.82608 0.87681 1.88278 1.22081 1.69279 1.24622 1.24376 0.97427 1.07406 0.91360 1.20463 0.82867 0.98091 0.93732 0.85643 1.23523 0.83080 0.81399 0.82947 1.90804 1.80829 1.28075 1.34867 1.84428 1.21816 1.63537 1.63177 1.59191 1.34466 1.59793 1.29576 1.05637 0.75630 0.77069 0.71031 1.93604 1.52844 1.85948 1.58668 1.93450 1.75931 1.40938 1.84542 1.30133 1.14439 1.18051 1.05995 1.18278 0.86868 1.00015 0.90833 1.20524 1.37015 0.92758 1.05106 0.91379 1.24945 0.94099 0.95956 0.97247 1.69972 1.44992 0.99581 1.36369 0.86592 0.79747 0.77741 0.84201 1.20105 1.20976 1.19373 1.23212 1.07018 0.92845 1.01514 1.22561 1.00654 0.94048 1.00533 0.90209 0.89314 0.87092 0.84886 0.87739 0.72958 0.84836 0.88017 0.92682 0.90642 0.89445 0.89487 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 8.46 37.16 0.31 -2.12 16 2 C 0.21 2.84 4.05 -3.44 -0.01 2.82 16 3 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 4 S -0.27 -3.07 22.92 -107.50 -2.46 -5.53 16 5 C -0.06 -0.55 6.91 37.98 0.26 -0.29 16 6 C 0.16 2.17 3.18 -68.80 -0.22 1.95 16 7 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 8 C 0.45 6.95 6.71 36.00 0.24 7.19 16 9 O -0.46 -9.11 13.96 -26.94 -0.38 -9.48 16 10 O -0.52 -5.85 13.27 -39.25 -0.52 -6.37 16 11 N -1.00 -15.76 2.85 -102.95 -0.29 -16.06 16 12 S 2.61 53.70 4.28 -107.50 -0.46 53.24 16 13 O -0.92 -22.36 13.51 -67.36 -0.91 -23.27 16 14 O -0.96 -20.75 15.12 -57.54 -0.87 -21.62 16 15 C -0.55 -11.41 5.96 37.16 0.22 -11.19 16 16 C 0.04 1.02 1.32 -155.66 -0.21 0.81 16 17 C -0.52 -14.06 8.15 -34.44 -0.28 -14.34 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C 0.08 2.23 5.38 -17.82 -0.10 2.14 16 20 N -0.87 -23.65 12.98 55.43 0.72 -22.93 16 21 Si 0.89 21.30 29.55 -169.99 -5.02 16.28 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 25 C -0.21 -4.48 9.96 -26.70 -0.27 -4.74 16 26 C -0.14 -3.09 9.49 -26.70 -0.25 -3.34 16 27 H 0.08 0.96 6.97 -51.93 -0.36 0.60 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.11 1.61 5.54 -51.93 -0.29 1.33 16 30 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 0.90 7.84 -51.93 -0.41 0.49 16 32 H 0.41 3.14 9.10 45.56 0.41 3.56 16 33 H 0.13 2.86 8.14 -51.92 -0.42 2.44 16 34 H 0.10 1.76 6.43 -51.92 -0.33 1.42 16 35 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 38 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 344.63 15.07 5.19 5.19 Total: -1.00 -34.56 344.63 -9.62 -44.18 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.33 Total: 7.46 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -0.29 Total: -21.09 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.43 Total: -38.99 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -2.68 Total: -60.74 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 50.63 SS G_CDS: -2.92 Total: 47.71 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.56 -9.62 -44.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519163033.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.703 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds