Wall clock time and date at job start Tue Mar 31 2020 18:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35909 * 117.00010 * 2 1 4 4 C 1.38749 * 120.47830 * 0.02562 * 3 2 1 5 5 N 1.31806 * 120.68478 * 179.97438 * 4 3 2 6 6 C 1.31878 * 121.78274 * 359.71294 * 5 4 3 7 7 C 1.38208 * 120.88395 * 0.57896 * 6 5 4 8 8 S 1.76197 * 120.38759 * 179.70530 * 7 6 5 9 9 O 1.42099 * 106.40449 * 156.18803 * 8 7 6 10 10 O 1.42098 * 106.40215 * 23.26375 * 8 7 6 11 11 N 1.65605 * 107.21743 * 269.72358 * 8 7 6 12 12 C 1.39080 * 119.99634 * 64.99978 * 11 8 7 13 13 C 1.38751 * 119.65707 * 179.97438 * 12 11 8 14 14 C 1.40773 * 118.67045 * 179.70081 * 13 12 11 15 15 C 1.41554 * 120.98951 * 180.25602 * 14 13 12 16 16 H 1.08004 * 119.99430 * 203.18087 * 15 14 13 17 17 C 1.40021 * 120.00408 * 23.17943 * 15 14 13 18 18 N 1.30747 * 119.99751 * 17.24306 * 17 15 14 19 19 Si 1.86802 * 119.99991 * 197.25001 * 17 15 14 20 20 H 1.48495 * 109.47492 * 90.00093 * 19 17 15 21 21 H 1.48506 * 109.46668 * 209.99681 * 19 17 15 22 22 H 1.48495 * 109.46965 * 329.99576 * 19 17 15 23 23 C 1.41189 * 118.01558 * 0.28189 * 14 13 12 24 24 C 1.36555 * 119.14343 * 359.97438 * 23 14 13 25 25 N 1.32098 * 121.27178 * 0.02562 * 24 23 14 26 26 C 1.38576 * 119.22415 * 359.43346 * 7 6 5 27 27 H 1.09001 * 109.47390 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47130 * 300.00240 * 1 2 3 29 29 H 1.08998 * 109.47224 * 60.00262 * 1 2 3 30 30 H 1.08001 * 119.65437 * 359.96344 * 4 3 2 31 31 H 1.08000 * 119.55440 * 180.30625 * 6 5 4 32 32 H 0.96996 * 120.00214 * 244.99944 * 11 8 7 33 33 H 1.07999 * 120.65902 * 359.97438 * 13 12 11 34 34 H 0.96997 * 119.99939 * 179.97438 * 18 17 15 35 35 H 1.07990 * 120.42638 * 180.02562 * 23 14 13 36 36 H 1.08006 * 119.36718 * 179.97438 * 24 23 14 37 37 H 1.08002 * 120.81418 * 180.25334 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3001 2.3809 0.0005 5 7 1.8942 3.5574 0.0010 6 6 3.2080 3.6721 0.0067 7 6 4.0179 2.5522 0.0003 8 16 5.7718 2.7207 0.0002 9 8 6.2909 1.5148 0.5439 10 8 6.0518 4.0028 0.5451 11 7 6.2595 2.7683 -1.5817 12 6 5.8759 3.8285 -2.3960 13 6 6.2890 3.8615 -3.7202 14 6 5.8833 4.9410 -4.5275 15 6 6.2718 5.0213 -5.8863 16 1 6.2914 5.9782 -6.3867 17 6 6.6307 3.8601 -6.5817 18 7 6.2961 2.6869 -6.1116 19 14 7.5877 3.9873 -8.1810 20 1 9.0436 3.9644 -7.8898 21 1 7.2402 2.8405 -9.0582 22 1 7.2397 5.2579 -8.8662 23 6 5.0779 5.9416 -3.9413 24 6 4.7254 5.8262 -2.6271 25 7 5.1237 4.7993 -1.8979 26 6 3.4344 1.2953 -0.0002 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2214 2.3269 0.0004 31 1 3.6569 4.6544 0.0119 32 1 6.8127 2.0568 -1.9403 33 1 6.9057 3.0725 -4.1246 34 1 6.5444 1.8825 -6.5935 35 1 4.7443 6.7867 -4.5250 36 1 4.1097 6.5898 -2.1749 37 1 4.0428 0.4029 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532897766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:58 Heat of formation + Delta-G solvation = -39.124102 kcal Electronic energy + Delta-G solvation = -26327.287678 eV Core-core repulsion = 22390.224078 eV Total energy + Delta-G solvation = -3937.063600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.66162 -38.78973 -38.17986 -36.88576 -35.53154 -34.81719 -33.88799 -32.65202 -30.78639 -30.51297 -28.34593 -27.75352 -26.16307 -23.93248 -23.31485 -22.11911 -21.54818 -19.43390 -18.67295 -17.76146 -17.43102 -17.15200 -16.67474 -16.35130 -16.06710 -15.90339 -15.34473 -14.74130 -14.39454 -14.26259 -14.20937 -13.71649 -13.27793 -13.17565 -13.11299 -12.87025 -12.69784 -12.13188 -11.98599 -11.78653 -11.71211 -11.60027 -11.57568 -11.32505 -11.26300 -11.03810 -10.60854 -10.36448 -10.18701 -10.09641 -9.52627 -9.46874 -8.63205 -8.29571 -8.15178 -7.30185 -6.97865 -4.75499 0.47046 0.80652 1.23367 2.61126 2.71349 2.94720 2.95651 2.98575 3.11583 3.21074 3.61182 3.75447 4.00240 4.35866 4.45318 4.48840 4.71374 4.77430 4.87367 4.99862 5.03736 5.18693 5.20024 5.42580 5.51353 5.78469 5.88655 6.15266 6.38407 6.59096 6.64376 6.84276 6.85653 7.00902 7.02394 7.30792 7.43992 7.73655 7.81463 7.98386 8.33846 8.59085 8.61130 9.26904 9.91907 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.003800 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.771000 B = 7366.423159 C = 7875.019041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.043 3.957 4 C 0.069 3.931 5 N -0.467 5.467 6 C 0.196 3.804 7 C -0.684 4.684 8 S 2.708 3.292 9 O -0.970 6.970 10 O -0.926 6.926 11 N -1.029 6.029 12 C 0.352 3.648 13 C -0.237 4.237 14 C 0.146 3.854 15 C -0.448 4.448 16 H 0.085 0.915 17 C 0.078 3.922 18 N -0.780 5.780 19 Si 0.914 3.086 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.282 4.282 24 C 0.138 3.862 25 N -0.611 5.611 26 C -0.008 4.008 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.161 0.839 31 H 0.190 0.810 32 H 0.428 0.572 33 H 0.131 0.869 34 H 0.285 0.715 35 H 0.105 0.895 36 H 0.130 0.870 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.214 -5.138 6.780 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.223 6.223 3 C -0.005 4.005 4 C -0.089 4.089 5 N -0.177 5.177 6 C 0.038 3.962 7 C -0.770 4.770 8 S 2.795 3.205 9 O -0.960 6.960 10 O -0.916 6.916 11 N -0.780 5.780 12 C 0.127 3.873 13 C -0.265 4.265 14 C 0.138 3.862 15 C -0.479 4.479 16 H 0.103 0.897 17 C -0.143 4.143 18 N -0.405 5.405 19 Si 0.737 3.263 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.306 4.306 24 C -0.014 4.014 25 N -0.334 5.334 26 C -0.036 4.036 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.178 0.822 31 H 0.207 0.793 32 H 0.264 0.736 33 H 0.148 0.852 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.147 0.853 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.492 -4.762 8.472 12.271 hybrid contribution 0.327 -1.178 -2.290 2.595 sum -7.165 -5.940 6.182 11.173 Atomic orbital electron populations 1.23127 0.78114 1.04406 1.01535 1.86088 1.21521 1.25620 1.89071 1.19944 0.93232 0.86014 1.01305 1.23251 1.00702 0.87618 0.97316 1.67779 1.12309 1.25763 1.11853 1.22841 0.87847 0.98831 0.86668 1.31885 1.29207 0.99286 1.16664 1.01698 0.72984 0.73472 0.72349 1.93576 1.78066 1.47982 1.76341 1.93597 1.82199 1.40161 1.75658 1.53012 1.63074 1.31214 1.30709 1.17629 0.94651 0.86579 0.88394 1.21587 1.09419 1.04824 0.90680 1.17632 0.86416 0.89321 0.92862 1.19675 1.38510 0.94642 0.95074 0.89681 1.26010 0.93566 0.94676 1.00033 1.69768 1.33259 0.99133 1.38320 0.86215 0.80424 0.79228 0.80390 1.19001 1.20143 1.18373 1.21573 1.08145 1.04105 0.96799 1.21213 0.96073 0.93213 0.90911 1.66541 1.22062 1.05479 1.39309 1.20589 0.92320 0.97183 0.93490 0.87821 0.92473 0.92333 0.82166 0.79318 0.73605 0.85178 0.90433 0.87710 0.85295 0.82659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.82 101.05 0.99 1.17 16 2 O -0.31 -3.82 10.51 -19.45 -0.20 -4.03 16 3 C 0.04 0.61 6.71 -39.07 -0.26 0.35 16 4 C 0.07 0.96 10.22 -17.37 -0.18 0.79 16 5 N -0.47 -7.72 10.35 -13.13 -0.14 -7.85 16 6 C 0.20 3.44 9.60 -17.54 -0.17 3.27 16 7 C -0.68 -11.65 5.78 -39.47 -0.23 -11.88 16 8 S 2.71 48.13 5.40 -107.50 -0.58 47.55 16 9 O -0.97 -17.52 17.36 -57.17 -0.99 -18.51 16 10 O -0.93 -18.74 16.16 -57.17 -0.92 -19.66 16 11 N -1.03 -19.00 5.85 31.09 0.18 -18.82 16 12 C 0.35 7.77 7.33 -154.97 -1.14 6.63 16 13 C -0.24 -5.68 8.64 -38.43 -0.33 -6.01 16 14 C 0.15 3.61 5.61 -106.56 -0.60 3.01 16 15 C -0.45 -10.91 9.12 -37.65 -0.34 -11.25 16 16 H 0.09 1.98 7.90 -52.48 -0.41 1.56 16 17 C 0.08 1.78 5.20 -17.35 -0.09 1.69 16 18 N -0.78 -18.39 10.90 55.55 0.61 -17.79 16 19 Si 0.91 17.17 29.59 -169.99 -5.03 12.14 16 20 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 21 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 23 C -0.28 -6.34 9.85 -39.07 -0.38 -6.73 16 24 C 0.14 2.91 11.10 -18.04 -0.20 2.71 16 25 N -0.61 -13.30 6.30 -12.82 -0.08 -13.38 16 26 C -0.01 -0.13 9.60 -39.14 -0.38 -0.50 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.36 7.68 -51.93 -0.40 -0.04 16 29 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 30 H 0.16 1.62 6.32 -52.49 -0.33 1.29 16 31 H 0.19 3.38 6.59 -52.49 -0.35 3.04 16 32 H 0.43 6.78 8.82 -34.48 -0.30 6.48 16 33 H 0.13 3.13 6.17 -52.49 -0.32 2.81 16 34 H 0.28 6.08 8.29 -40.82 -0.34 5.74 16 35 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.13 2.31 8.06 -52.48 -0.42 1.88 16 37 H 0.16 2.15 7.71 -52.49 -0.40 1.74 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -30.64 333.74 -8.76 -39.40 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -3.32 Total: 12.68 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -3.30 Total: -16.75 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.57 Total: -57.85 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -2.12 Total: -42.20 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Atomic # 16 Polarization: 48.13 SS G_CDS: -0.58 Total: 47.55 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.64 -8.76 -39.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532897766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.277 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds