Wall clock time and date at job start Tue Mar 31 2020 18:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35909 * 117.00010 * 2 1 4 4 C 1.38749 * 120.47830 * 0.02562 * 3 2 1 5 5 N 1.31806 * 120.68478 * 179.97438 * 4 3 2 6 6 C 1.31878 * 121.78274 * 359.71294 * 5 4 3 7 7 C 1.38208 * 120.88395 * 0.57896 * 6 5 4 8 8 S 1.76197 * 120.38759 * 179.70530 * 7 6 5 9 9 O 1.42099 * 106.40449 * 156.18803 * 8 7 6 10 10 O 1.42098 * 106.40215 * 23.26375 * 8 7 6 11 11 N 1.65605 * 107.21743 * 269.72358 * 8 7 6 12 12 C 1.39080 * 119.99634 * 64.99978 * 11 8 7 13 13 C 1.38751 * 119.65707 * 179.97438 * 12 11 8 14 14 C 1.40773 * 118.67045 * 179.70081 * 13 12 11 15 15 C 1.41554 * 120.98951 * 180.25602 * 14 13 12 16 16 H 1.08004 * 119.99430 * 203.18087 * 15 14 13 17 17 C 1.40021 * 120.00408 * 23.17943 * 15 14 13 18 18 N 1.30747 * 119.99751 * 17.24306 * 17 15 14 19 19 Si 1.86802 * 119.99991 * 197.25001 * 17 15 14 20 20 H 1.48495 * 109.47492 * 90.00093 * 19 17 15 21 21 H 1.48506 * 109.46668 * 209.99681 * 19 17 15 22 22 H 1.48495 * 109.46965 * 329.99576 * 19 17 15 23 23 C 1.41189 * 118.01558 * 0.28189 * 14 13 12 24 24 C 1.36555 * 119.14343 * 359.97438 * 23 14 13 25 25 N 1.32098 * 121.27178 * 0.02562 * 24 23 14 26 26 C 1.38576 * 119.22415 * 359.43346 * 7 6 5 27 27 H 1.09001 * 109.47390 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47130 * 300.00240 * 1 2 3 29 29 H 1.08998 * 109.47224 * 60.00262 * 1 2 3 30 30 H 1.08001 * 119.65437 * 359.96344 * 4 3 2 31 31 H 1.08000 * 119.55440 * 180.30625 * 6 5 4 32 32 H 0.96996 * 120.00214 * 244.99944 * 11 8 7 33 33 H 1.07999 * 120.65902 * 359.97438 * 13 12 11 34 34 H 0.96997 * 119.99939 * 179.97438 * 18 17 15 35 35 H 1.07990 * 120.42638 * 180.02562 * 23 14 13 36 36 H 1.08006 * 119.36718 * 179.97438 * 24 23 14 37 37 H 1.08002 * 120.81418 * 180.25334 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3001 2.3809 0.0005 5 7 1.8942 3.5574 0.0010 6 6 3.2080 3.6721 0.0067 7 6 4.0179 2.5522 0.0003 8 16 5.7718 2.7207 0.0002 9 8 6.2909 1.5148 0.5439 10 8 6.0518 4.0028 0.5451 11 7 6.2595 2.7683 -1.5817 12 6 5.8759 3.8285 -2.3960 13 6 6.2890 3.8615 -3.7202 14 6 5.8833 4.9410 -4.5275 15 6 6.2718 5.0213 -5.8863 16 1 6.2914 5.9782 -6.3867 17 6 6.6307 3.8601 -6.5817 18 7 6.2961 2.6869 -6.1116 19 14 7.5877 3.9873 -8.1810 20 1 9.0436 3.9644 -7.8898 21 1 7.2402 2.8405 -9.0582 22 1 7.2397 5.2579 -8.8662 23 6 5.0779 5.9416 -3.9413 24 6 4.7254 5.8262 -2.6271 25 7 5.1237 4.7993 -1.8979 26 6 3.4344 1.2953 -0.0002 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2214 2.3269 0.0004 31 1 3.6569 4.6544 0.0119 32 1 6.8127 2.0568 -1.9403 33 1 6.9057 3.0725 -4.1246 34 1 6.5444 1.8825 -6.5935 35 1 4.7443 6.7867 -4.5250 36 1 4.1097 6.5898 -2.1749 37 1 4.0428 0.4029 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532897766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:58 Heat of formation + Delta-G solvation = -60.477731 kcal Electronic energy + Delta-G solvation = -26328.213641 eV Core-core repulsion = 22390.224078 eV Total energy + Delta-G solvation = -3937.989563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76754 -40.49397 -39.20412 -38.37532 -37.04274 -36.48393 -35.56766 -33.85134 -32.49516 -31.69414 -30.04085 -28.49406 -27.94172 -25.10103 -24.48766 -23.83642 -23.24254 -20.82837 -20.03533 -19.28090 -18.88993 -18.33296 -17.89947 -17.85533 -17.28096 -16.97998 -16.92410 -16.17503 -16.07474 -15.87739 -15.27149 -14.92781 -14.84462 -14.70358 -14.43126 -14.31128 -13.98899 -13.51332 -13.31416 -13.23624 -13.12281 -12.96502 -12.92400 -12.67705 -12.57420 -12.50567 -12.19633 -11.93075 -11.89197 -11.38724 -11.21580 -10.68813 -10.08604 -9.93179 -9.66902 -9.01065 -8.69392 -6.57602 -0.86300 -0.50573 0.03751 0.90515 0.98817 1.41453 1.53798 1.56632 1.72880 2.07306 2.18750 2.35642 2.60224 2.76963 3.21272 3.33918 3.46130 3.58274 3.73056 3.78620 3.82729 4.14638 4.32346 4.35515 4.53875 4.65301 4.69213 4.72953 4.87814 4.93654 5.10330 5.16502 5.19676 5.29361 5.55252 5.85935 5.95636 6.05907 6.22086 6.55684 6.61265 6.80662 6.82078 7.54196 8.22683 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.003800 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.771000 B = 7366.423159 C = 7875.019041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.320 6.320 3 C 0.051 3.949 4 C 0.073 3.927 5 N -0.480 5.480 6 C 0.179 3.821 7 C -0.691 4.691 8 S 2.726 3.274 9 O -0.973 6.973 10 O -0.953 6.953 11 N -1.026 6.026 12 C 0.355 3.645 13 C -0.262 4.262 14 C 0.118 3.882 15 C -0.480 4.480 16 H 0.086 0.914 17 C 0.041 3.959 18 N -0.807 5.807 19 Si 0.984 3.016 20 H -0.263 1.263 21 H -0.268 1.268 22 H -0.257 1.257 23 C -0.296 4.296 24 C 0.136 3.864 25 N -0.610 5.610 26 C -0.025 4.025 27 H 0.128 0.872 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.201 0.799 31 H 0.179 0.821 32 H 0.437 0.563 33 H 0.121 0.879 34 H 0.293 0.707 35 H 0.118 0.882 36 H 0.163 0.837 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.649 -5.975 6.642 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.232 6.232 3 C 0.002 3.998 4 C -0.085 4.085 5 N -0.190 5.190 6 C 0.021 3.979 7 C -0.780 4.780 8 S 2.815 3.185 9 O -0.963 6.963 10 O -0.943 6.943 11 N -0.776 5.776 12 C 0.129 3.871 13 C -0.289 4.289 14 C 0.110 3.890 15 C -0.510 4.510 16 H 0.104 0.896 17 C -0.177 4.177 18 N -0.432 5.432 19 Si 0.805 3.195 20 H -0.187 1.187 21 H -0.193 1.193 22 H -0.180 1.180 23 C -0.320 4.320 24 C -0.015 4.015 25 N -0.333 5.333 26 C -0.052 4.052 27 H 0.146 0.854 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.218 0.782 31 H 0.196 0.804 32 H 0.275 0.725 33 H 0.139 0.861 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.180 0.820 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.907 -5.610 8.344 13.433 hybrid contribution 0.580 -1.027 -2.144 2.447 sum -8.328 -6.637 6.200 12.322 Atomic orbital electron populations 1.23552 0.75460 1.06604 1.02885 1.86101 1.24203 1.24440 1.88485 1.19982 0.92887 0.87032 0.99856 1.23874 1.02486 0.86660 0.95512 1.67790 1.11724 1.27160 1.12355 1.22727 0.88592 0.98567 0.88006 1.31559 1.28005 1.00078 1.18360 1.00989 0.73194 0.72696 0.71580 1.93563 1.78651 1.47877 1.76202 1.93559 1.83123 1.41496 1.76087 1.52967 1.63318 1.30754 1.30609 1.17747 0.93961 0.87119 0.88297 1.21578 1.10615 1.05077 0.91656 1.18030 0.87130 0.90281 0.93572 1.19947 1.40144 0.95409 0.95507 0.89576 1.26802 0.93795 0.93939 1.03165 1.69805 1.33714 0.99880 1.39798 0.85158 0.78748 0.79378 0.76238 1.18724 1.19282 1.18029 1.21780 1.08287 1.04286 0.97614 1.21766 0.95624 0.93523 0.90633 1.66728 1.21817 1.05541 1.39247 1.20820 0.93598 0.96961 0.93847 0.85417 0.90646 0.91346 0.78246 0.80376 0.72535 0.86095 0.89629 0.86435 0.81979 0.81519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.82 113.37 1.11 1.22 16 2 O -0.32 -6.99 10.51 -92.53 -0.97 -7.96 16 3 C 0.05 1.35 6.71 22.60 0.15 1.50 16 4 C 0.07 1.85 10.22 84.82 0.87 2.72 16 5 N -0.48 -15.22 10.35 -195.44 -2.02 -17.24 16 6 C 0.18 6.22 9.60 84.68 0.81 7.03 16 7 C -0.69 -23.35 5.78 22.34 0.13 -23.22 16 8 S 2.73 97.34 5.40 -56.49 -0.30 97.03 16 9 O -0.97 -34.89 17.36 -128.00 -2.22 -37.11 16 10 O -0.95 -38.98 16.16 -128.00 -2.07 -41.05 16 11 N -1.03 -38.40 5.85 -55.55 -0.32 -38.72 16 12 C 0.36 15.90 7.33 132.90 0.97 16.87 16 13 C -0.26 -12.85 8.64 23.01 0.20 -12.65 16 14 C 0.12 5.97 5.61 -21.12 -0.12 5.85 16 15 C -0.48 -23.80 9.12 23.52 0.21 -23.58 16 16 H 0.09 4.08 7.90 -2.91 -0.02 4.06 16 17 C 0.04 1.90 5.20 85.29 0.44 2.34 16 18 N -0.81 -38.51 10.90 21.84 0.24 -38.27 16 19 Si 0.98 34.99 29.59 68.60 2.03 37.02 16 20 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 21 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 22 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 23 C -0.30 -13.41 9.85 22.60 0.22 -13.19 16 24 C 0.14 5.72 11.10 84.26 0.94 6.65 16 25 N -0.61 -26.69 6.30 -194.46 -1.23 -27.91 16 26 C -0.02 -0.75 9.60 22.56 0.22 -0.53 16 27 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.63 7.68 -2.38 -0.02 0.62 16 29 H 0.07 0.69 7.68 -2.39 -0.02 0.67 16 30 H 0.20 3.26 6.32 -2.91 -0.02 3.24 16 31 H 0.18 6.45 6.59 -2.91 -0.02 6.44 16 32 H 0.44 14.14 8.82 -96.75 -0.85 13.28 16 33 H 0.12 6.04 6.17 -2.91 -0.02 6.02 16 34 H 0.29 12.54 8.29 -92.71 -0.77 11.77 16 35 H 0.12 4.87 8.06 -2.92 -0.02 4.84 16 36 H 0.16 5.58 8.06 -2.91 -0.02 5.55 16 37 H 0.17 4.46 7.71 -2.91 -0.02 4.44 16 Total: -1.00 -66.02 333.74 -0.42 -66.44 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: 0.29 Total: 36.77 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 6.16 Total: -28.99 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -3.34 Total: -122.15 kcal Atomic # 8 Polarization: -80.86 SS G_CDS: -5.26 Total: -86.12 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Atomic # 16 Polarization: 97.34 SS G_CDS: -0.30 Total: 97.03 kcal Total: -66.02 -0.42 -66.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532897766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.959 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds