Wall clock time and date at job start Tue Mar 31 2020 19:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34637 * 117.00130 * 2 1 4 4 O 1.21393 * 119.99789 * 359.97438 * 3 2 1 5 5 C 1.48385 * 119.99939 * 179.97438 * 3 2 1 6 6 C 1.39580 * 120.50970 * 179.97438 * 5 3 2 7 7 C 1.38820 * 118.41600 * 180.02562 * 6 5 3 8 8 C 1.50702 * 120.38163 * 179.97438 * 7 6 5 9 9 N 1.32101 * 119.23875 * 359.74278 * 7 6 5 10 10 C 1.32590 * 120.97104 * 0.51006 * 9 7 6 11 11 S 1.76196 * 119.13281 * 179.75738 * 10 9 7 12 12 C 1.76197 * 99.99960 * 179.73336 * 11 10 9 13 13 N 1.32304 * 126.25246 * 0.02562 * 12 11 10 14 14 N 1.28525 * 110.20697 * 179.70715 * 13 12 11 15 15 C 1.33112 * 109.73125 * 0.45280 * 14 13 12 16 16 C 1.39779 * 126.56583 * 179.82137 * 15 14 13 17 17 H 1.08006 * 119.99737 * 187.90547 * 16 15 14 18 18 C 1.40079 * 120.00278 * 7.90308 * 16 15 14 19 19 N 1.30806 * 120.00070 * 191.33924 * 18 16 15 20 20 Si 1.86794 * 120.00012 * 11.34293 * 18 16 15 21 21 H 1.48503 * 109.47193 * 269.99911 * 20 18 16 22 22 H 1.48499 * 109.47190 * 29.99369 * 20 18 16 23 23 H 1.48496 * 109.47379 * 150.00130 * 20 18 16 24 24 N 1.36665 * 126.25567 * 180.02562 * 12 11 10 25 25 C 1.46499 * 127.14401 * 0.03205 * 24 12 11 26 26 N 1.32289 * 121.73081 * 359.48062 * 10 9 7 27 27 H 1.09001 * 109.47085 * 300.00152 * 1 2 3 28 28 H 1.08997 * 109.46997 * 59.99987 * 1 2 3 29 29 H 1.09002 * 109.47274 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.79088 * 0.03663 * 6 5 3 31 31 H 1.09003 * 109.47299 * 89.99643 * 8 7 6 32 32 H 1.08996 * 109.46933 * 210.00001 * 8 7 6 33 33 H 1.08996 * 109.46818 * 329.99678 * 8 7 6 34 34 H 0.97001 * 120.00038 * 354.77263 * 19 18 16 35 35 H 1.08999 * 109.47742 * 269.97793 * 25 24 12 36 36 H 1.09005 * 109.47227 * 29.98244 * 25 24 12 37 37 H 1.08999 * 109.46914 * 149.97542 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4021 2.2177 -0.0005 5 6 3.5451 1.2772 0.0006 6 6 4.1898 2.5152 0.0000 7 6 5.5779 2.5371 0.0001 8 6 6.3194 3.8490 -0.0011 9 7 6.2412 1.3947 0.0058 10 6 5.6008 0.2338 0.0013 11 16 6.5340 -1.2607 0.0028 12 6 5.2242 -2.4393 0.0036 13 7 3.9290 -2.1695 0.0027 14 7 3.2485 -3.2598 -0.0024 15 6 4.0734 -4.3045 0.0047 16 6 3.7083 -5.6538 0.0058 17 1 4.4609 -6.4167 0.1405 18 6 2.3665 -6.0165 -0.1679 19 7 1.9885 -7.2494 0.0519 20 14 1.1169 -4.7398 -0.7134 21 1 0.5265 -4.0832 0.4806 22 1 1.7883 -3.7194 -1.5580 23 1 0.0426 -5.4015 -1.4963 24 7 5.3606 -3.7991 0.0053 25 6 6.6108 -4.5628 0.0074 26 7 4.2795 0.1681 0.0012 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.6224 3.4341 -0.0002 31 1 6.4982 4.1663 1.0263 32 1 7.2730 3.7269 -0.5148 33 1 5.7235 4.6027 -0.5156 34 1 2.6483 -7.9289 0.2612 35 1 6.9218 -4.7538 -1.0196 36 1 7.3844 -3.9919 0.5211 37 1 6.4565 -5.5109 0.5226 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557673488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:31 Heat of formation + Delta-G solvation = 49.604522 kcal Electronic energy + Delta-G solvation = -26310.921707 eV Core-core repulsion = 22409.998419 eV Total energy + Delta-G solvation = -3900.923288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16998 -40.87675 -39.86500 -36.34582 -34.61468 -33.91608 -33.57648 -32.71018 -30.02739 -28.82822 -27.82763 -26.73945 -25.48253 -24.83937 -24.01235 -21.48685 -21.07053 -20.18154 -18.54390 -18.19775 -17.78495 -16.76194 -16.48035 -16.31913 -15.69504 -15.44498 -15.27615 -14.95910 -14.70277 -13.78761 -13.62313 -13.41175 -13.37385 -13.17367 -13.03957 -12.75978 -12.60516 -12.57173 -12.02041 -11.89918 -11.58274 -11.04215 -10.82077 -10.79492 -10.65280 -10.63102 -10.56871 -10.23467 -9.92852 -9.59491 -9.34320 -9.05133 -8.82772 -8.62503 -8.36348 -7.46601 -7.20908 -4.84480 0.33605 0.84925 1.26676 2.16580 2.42311 2.65729 2.91291 3.50943 3.61341 3.68673 3.87637 3.92832 4.02564 4.18746 4.33763 4.38466 4.47206 4.82018 5.01695 5.11129 5.21141 5.29295 5.29715 5.32191 5.37048 5.52218 5.61917 5.69542 5.77667 5.87213 6.07362 6.39098 6.44201 6.68932 6.81436 7.13193 7.38820 7.58702 7.66252 7.93099 8.04807 8.35859 8.55846 9.94790 10.21843 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.005078 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.499681 B = 5513.169274 C = 7702.446471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.300 6.300 3 C 0.526 3.474 4 O -0.505 6.505 5 C 0.157 3.843 6 C -0.182 4.182 7 C 0.182 3.818 8 C -0.101 4.101 9 N -0.491 5.491 10 C 0.280 3.720 11 S 0.216 5.784 12 C -0.004 4.004 13 N -0.178 5.178 14 N -0.407 5.407 15 C 0.346 3.654 16 C -0.492 4.492 17 H 0.082 0.918 18 C 0.067 3.933 19 N -0.807 5.807 20 Si 1.102 2.898 21 H -0.276 1.276 22 H -0.251 1.251 23 H -0.313 1.313 24 N -0.513 5.513 25 C 0.100 3.900 26 N -0.407 5.407 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.159 0.841 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.284 0.716 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.865 15.008 -0.396 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.212 6.212 3 C 0.369 3.631 4 O -0.393 6.393 5 C 0.006 3.994 6 C -0.209 4.209 7 C 0.031 3.969 8 C -0.159 4.159 9 N -0.210 5.210 10 C -0.096 4.096 11 S 0.452 5.548 12 C -0.375 4.375 13 N -0.023 5.023 14 N -0.259 5.259 15 C 0.104 3.896 16 C -0.532 4.532 17 H 0.100 0.900 18 C -0.156 4.156 19 N -0.431 5.431 20 Si 0.929 3.071 21 H -0.202 1.202 22 H -0.176 1.176 23 H -0.243 1.243 24 N -0.215 5.215 25 C -0.045 4.045 26 N -0.126 5.126 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.176 0.824 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.561 15.068 -0.649 16.074 hybrid contribution 0.993 -0.442 0.497 1.195 sum 6.554 14.626 -0.152 16.028 Atomic orbital electron populations 1.23401 0.76222 1.04488 1.01939 1.86944 1.22818 1.29818 1.81622 1.20705 0.87444 0.82290 0.72698 1.90807 1.65717 1.36499 1.46310 1.20603 0.92100 0.89932 0.96723 1.22628 0.95917 0.99342 1.03052 1.21694 0.90374 0.94405 0.90459 1.20768 1.00793 0.90389 1.03926 1.68148 1.40859 0.97328 1.14679 1.25080 0.90584 0.97211 0.96719 1.83330 0.98978 0.85220 1.87258 1.25446 0.98893 0.86056 1.27126 1.74916 0.97395 1.19967 1.10012 1.74398 1.23441 0.93933 1.34092 1.21730 0.78290 0.95992 0.93623 1.19387 0.97043 0.88255 1.48547 0.89968 1.27309 0.98694 0.99964 0.89649 1.70656 1.38782 1.02832 1.30815 0.82964 0.72585 0.72543 0.78983 1.20167 1.17606 1.24305 1.45814 1.07207 1.03564 1.64934 1.21551 0.84204 0.96732 1.02021 1.69677 1.04987 1.28789 1.09161 0.91968 0.91937 0.87403 0.82373 0.89431 0.89614 0.89810 0.90490 0.92073 0.91512 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 101.05 1.07 1.55 16 2 O -0.30 -5.73 10.42 -40.32 -0.42 -6.15 16 3 C 0.53 9.34 7.97 34.91 0.28 9.62 16 4 O -0.51 -8.69 16.21 -19.18 -0.31 -9.00 16 5 C 0.16 2.73 6.79 -82.67 -0.56 2.17 16 6 C -0.18 -2.45 9.40 -38.87 -0.37 -2.81 16 7 C 0.18 2.28 6.83 -82.26 -0.56 1.72 16 8 C -0.10 -0.76 10.22 36.01 0.37 -0.39 16 9 N -0.49 -7.54 10.31 -9.71 -0.10 -7.64 16 10 C 0.28 5.07 7.84 -91.04 -0.71 4.36 16 11 S 0.22 3.77 22.18 -107.50 -2.38 1.39 16 12 C 0.00 -0.10 8.04 -87.35 -0.70 -0.80 16 13 N -0.18 -4.54 9.30 30.88 0.29 -4.25 16 14 N -0.41 -11.05 7.49 31.25 0.23 -10.81 16 15 C 0.35 9.01 7.22 -154.86 -1.12 7.89 16 16 C -0.49 -12.93 9.47 -38.32 -0.36 -13.29 16 17 H 0.08 2.10 7.46 -52.48 -0.39 1.70 16 18 C 0.07 1.77 5.52 -17.30 -0.10 1.68 16 19 N -0.81 -21.40 13.65 55.56 0.76 -20.64 16 20 Si 1.10 27.07 26.40 -169.99 -4.49 22.59 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.25 -6.45 6.25 56.52 0.35 -6.09 16 23 H -0.31 -7.39 7.11 56.52 0.40 -6.99 16 24 N -0.51 -11.57 3.26 -123.22 -0.40 -11.98 16 25 C 0.10 1.68 10.89 59.85 0.65 2.33 16 26 N -0.41 -8.12 6.96 -10.04 -0.07 -8.19 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.16 1.70 7.73 -52.49 -0.41 1.29 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.28 7.15 8.73 -40.82 -0.36 6.79 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.94 7.85 -51.93 -0.41 0.54 16 37 H 0.08 1.32 7.47 -51.93 -0.39 0.93 16 LS Contribution 343.52 15.07 5.18 5.18 Total: -1.00 -33.46 343.52 -7.58 -41.04 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: -3.75 Total: -5.55 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: -2.11 Total: 14.03 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: 0.71 Total: -63.52 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.73 Total: -15.15 kcal Atomic # 14 Polarization: 27.07 SS G_CDS: -4.49 Total: 22.59 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.38 Total: 1.39 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.46 -7.58 -41.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557673488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.647 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds