Wall clock time and date at job start Tue Mar 31 2020 19:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34637 * 117.00130 * 2 1 4 4 O 1.21393 * 119.99789 * 359.97438 * 3 2 1 5 5 C 1.48385 * 119.99939 * 179.97438 * 3 2 1 6 6 C 1.39580 * 120.50970 * 179.97438 * 5 3 2 7 7 C 1.38820 * 118.41600 * 180.02562 * 6 5 3 8 8 C 1.50702 * 120.38163 * 179.97438 * 7 6 5 9 9 N 1.32101 * 119.23875 * 359.74278 * 7 6 5 10 10 C 1.32590 * 120.97104 * 0.51006 * 9 7 6 11 11 S 1.76196 * 119.13281 * 179.75738 * 10 9 7 12 12 C 1.76197 * 99.99960 * 179.73336 * 11 10 9 13 13 N 1.32304 * 126.25246 * 0.02562 * 12 11 10 14 14 N 1.28525 * 110.20697 * 179.70715 * 13 12 11 15 15 C 1.33112 * 109.73125 * 0.45280 * 14 13 12 16 16 C 1.39779 * 126.56583 * 179.82137 * 15 14 13 17 17 H 1.08006 * 119.99737 * 187.90547 * 16 15 14 18 18 C 1.40079 * 120.00278 * 7.90308 * 16 15 14 19 19 N 1.30806 * 120.00070 * 191.33924 * 18 16 15 20 20 Si 1.86794 * 120.00012 * 11.34293 * 18 16 15 21 21 H 1.48503 * 109.47193 * 269.99911 * 20 18 16 22 22 H 1.48499 * 109.47190 * 29.99369 * 20 18 16 23 23 H 1.48496 * 109.47379 * 150.00130 * 20 18 16 24 24 N 1.36665 * 126.25567 * 180.02562 * 12 11 10 25 25 C 1.46499 * 127.14401 * 0.03205 * 24 12 11 26 26 N 1.32289 * 121.73081 * 359.48062 * 10 9 7 27 27 H 1.09001 * 109.47085 * 300.00152 * 1 2 3 28 28 H 1.08997 * 109.46997 * 59.99987 * 1 2 3 29 29 H 1.09002 * 109.47274 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.79088 * 0.03663 * 6 5 3 31 31 H 1.09003 * 109.47299 * 89.99643 * 8 7 6 32 32 H 1.08996 * 109.46933 * 210.00001 * 8 7 6 33 33 H 1.08996 * 109.46818 * 329.99678 * 8 7 6 34 34 H 0.97001 * 120.00038 * 354.77263 * 19 18 16 35 35 H 1.08999 * 109.47742 * 269.97793 * 25 24 12 36 36 H 1.09005 * 109.47227 * 29.98244 * 25 24 12 37 37 H 1.08999 * 109.46914 * 149.97542 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4021 2.2177 -0.0005 5 6 3.5451 1.2772 0.0006 6 6 4.1898 2.5152 0.0000 7 6 5.5779 2.5371 0.0001 8 6 6.3194 3.8490 -0.0011 9 7 6.2412 1.3947 0.0058 10 6 5.6008 0.2338 0.0013 11 16 6.5340 -1.2607 0.0028 12 6 5.2242 -2.4393 0.0036 13 7 3.9290 -2.1695 0.0027 14 7 3.2485 -3.2598 -0.0024 15 6 4.0734 -4.3045 0.0047 16 6 3.7083 -5.6538 0.0058 17 1 4.4609 -6.4167 0.1405 18 6 2.3665 -6.0165 -0.1679 19 7 1.9885 -7.2494 0.0519 20 14 1.1169 -4.7398 -0.7134 21 1 0.5265 -4.0832 0.4806 22 1 1.7883 -3.7194 -1.5580 23 1 0.0426 -5.4015 -1.4963 24 7 5.3606 -3.7991 0.0053 25 6 6.6108 -4.5628 0.0074 26 7 4.2795 0.1681 0.0012 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.6224 3.4341 -0.0002 31 1 6.4982 4.1663 1.0263 32 1 7.2730 3.7269 -0.5148 33 1 5.7235 4.6027 -0.5156 34 1 2.6483 -7.9289 0.2612 35 1 6.9218 -4.7538 -1.0196 36 1 7.3844 -3.9919 0.5211 37 1 6.4565 -5.5109 0.5226 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557673488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:30 Heat of formation + Delta-G solvation = 28.942714 kcal Electronic energy + Delta-G solvation = -26311.817670 eV Core-core repulsion = 22409.998419 eV Total energy + Delta-G solvation = -3901.819251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.73175 -42.38790 -41.15686 -37.67953 -35.91928 -35.69981 -35.31231 -33.87161 -31.90156 -29.83282 -28.95583 -28.33677 -27.18868 -26.14787 -25.19562 -23.28029 -22.45214 -21.89758 -20.12968 -19.85711 -19.08253 -18.08182 -17.80840 -17.62341 -17.25615 -16.84278 -16.59798 -16.39346 -16.26474 -15.66879 -15.17023 -14.78365 -14.65777 -14.43255 -14.20934 -14.12804 -13.92068 -13.57555 -13.22625 -13.12432 -13.01749 -12.95799 -12.56592 -12.11122 -11.98685 -11.91174 -11.83879 -11.83593 -11.50246 -11.31406 -11.17362 -10.67721 -10.39444 -10.30787 -10.24967 -9.46200 -8.78498 -6.80721 -0.89390 -0.30016 -0.12045 0.61550 1.02899 1.15230 1.43940 1.52678 1.68061 2.00139 2.22834 2.27131 2.44710 2.46601 2.79846 3.11532 3.16732 3.39483 3.71572 3.95574 4.01802 4.15286 4.26013 4.27368 4.37826 4.55290 4.63546 4.64852 4.75620 4.78035 4.80607 4.87550 5.10895 5.29744 5.31287 5.41526 5.65905 5.80561 6.06589 6.39532 6.45252 6.64867 6.68693 7.95961 8.33858 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.005078 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.499681 B = 5513.169274 C = 7702.446471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.334 6.334 3 C 0.525 3.475 4 O -0.506 6.506 5 C 0.127 3.873 6 C -0.158 4.158 7 C 0.189 3.811 8 C -0.098 4.098 9 N -0.490 5.490 10 C 0.254 3.746 11 S 0.269 5.731 12 C 0.009 3.991 13 N -0.214 5.214 14 N -0.436 5.436 15 C 0.326 3.674 16 C -0.509 4.509 17 H 0.082 0.918 18 C 0.044 3.956 19 N -0.826 5.826 20 Si 1.135 2.865 21 H -0.282 1.282 22 H -0.273 1.273 23 H -0.300 1.300 24 N -0.513 5.513 25 C 0.089 3.911 26 N -0.451 5.451 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.190 0.810 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.286 0.714 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.842 17.996 -0.439 20.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.247 6.247 3 C 0.368 3.632 4 O -0.395 6.395 5 C -0.022 4.022 6 C -0.184 4.184 7 C 0.037 3.963 8 C -0.155 4.155 9 N -0.209 5.209 10 C -0.122 4.122 11 S 0.503 5.497 12 C -0.364 4.364 13 N -0.056 5.056 14 N -0.286 5.286 15 C 0.079 3.921 16 C -0.550 4.550 17 H 0.100 0.900 18 C -0.175 4.175 19 N -0.452 5.452 20 Si 0.962 3.038 21 H -0.209 1.209 22 H -0.199 1.199 23 H -0.230 1.230 24 N -0.214 5.214 25 C -0.053 4.053 26 N -0.170 5.170 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.207 0.793 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.515 18.061 -0.692 19.575 hybrid contribution 0.576 -1.030 0.516 1.287 sum 8.091 17.032 -0.176 18.857 Atomic orbital electron populations 1.23621 0.74465 1.05110 1.03450 1.86915 1.24963 1.31021 1.81818 1.20868 0.87902 0.81954 0.72496 1.90778 1.65881 1.36158 1.46673 1.20816 0.91822 0.90974 0.98557 1.23048 0.96529 0.98905 0.99939 1.22636 0.90405 0.95367 0.87868 1.21005 1.00957 0.87802 1.05735 1.68252 1.40756 0.97343 1.14562 1.25186 0.90482 0.98304 0.98255 1.82991 0.95813 0.83334 1.87518 1.26459 0.99958 0.87209 1.22797 1.74912 0.98735 1.19465 1.12532 1.74287 1.25001 0.94743 1.34587 1.21797 0.79836 0.95852 0.94584 1.19366 0.97076 0.88541 1.50020 0.89989 1.27729 0.99635 1.00447 0.89735 1.70653 1.38937 1.03030 1.32550 0.82463 0.71953 0.71162 0.78177 1.20897 1.19884 1.22958 1.46159 1.07949 1.04018 1.63253 1.21947 0.82624 0.96886 1.03871 1.69499 1.05978 1.30652 1.10874 0.90488 0.90369 0.87346 0.79267 0.87309 0.88817 0.86926 0.90312 0.90129 0.88283 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.98 16 2 O -0.33 -13.11 10.42 -55.46 -0.58 -13.69 16 3 C 0.53 18.58 7.97 70.53 0.56 19.14 16 4 O -0.51 -16.89 16.21 20.18 0.33 -16.56 16 5 C 0.13 4.30 6.79 41.99 0.29 4.58 16 6 C -0.16 -3.78 9.40 22.73 0.21 -3.57 16 7 C 0.19 4.06 6.83 42.66 0.29 4.35 16 8 C -0.10 -0.97 10.22 71.24 0.73 -0.24 16 9 N -0.49 -13.77 10.31 -184.62 -1.90 -15.67 16 10 C 0.25 8.87 7.84 180.50 1.41 10.28 16 11 S 0.27 8.93 22.18 -56.49 -1.25 7.68 16 12 C 0.01 0.39 8.04 179.21 1.44 1.83 16 13 N -0.21 -11.07 9.30 -56.23 -0.52 -11.59 16 14 N -0.44 -24.31 7.49 -55.05 -0.41 -24.72 16 15 C 0.33 17.27 7.22 133.25 0.96 18.24 16 16 C -0.51 -27.39 9.47 23.09 0.22 -27.17 16 17 H 0.08 4.27 7.46 -2.91 -0.02 4.25 16 18 C 0.04 2.42 5.52 85.29 0.47 2.89 16 19 N -0.83 -44.64 13.65 21.85 0.30 -44.35 16 20 Si 1.13 57.02 26.40 68.60 1.81 58.83 16 21 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 22 H -0.27 -14.55 6.25 99.48 0.62 -13.93 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 N -0.51 -22.94 3.26 -543.74 -1.77 -24.71 16 25 C 0.09 2.85 10.89 127.77 1.39 4.24 16 26 N -0.45 -17.87 6.96 -185.69 -1.29 -19.16 16 27 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.19 3.26 7.73 -2.91 -0.02 3.24 16 31 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 0.55 8.09 -2.39 -0.02 0.53 16 34 H 0.29 14.71 8.73 -92.71 -0.81 13.90 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 36 H 0.10 2.51 7.85 -2.38 -0.02 2.49 16 37 H 0.08 2.64 7.47 -2.39 -0.02 2.62 16 Total: -1.00 -75.33 343.52 4.89 -70.44 By element: Atomic # 1 Polarization: -4.07 SS G_CDS: 1.01 Total: -3.06 kcal Atomic # 6 Polarization: 27.38 SS G_CDS: 9.17 Total: 36.55 kcal Atomic # 7 Polarization: -134.59 SS G_CDS: -5.60 Total: -140.20 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.25 Total: -30.25 kcal Atomic # 14 Polarization: 57.02 SS G_CDS: 1.81 Total: 58.83 kcal Atomic # 16 Polarization: 8.93 SS G_CDS: -1.25 Total: 7.68 kcal Total: -75.33 4.89 -70.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557673488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.382 kcal (2) G-P(sol) polarization free energy of solvation -75.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds