Wall clock time and date at job start Tue Mar 31 2020 18:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00020 * 2 1 4 4 H 1.48496 * 109.47139 * 239.99453 * 3 2 1 5 5 H 1.48503 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47341 * 119.99342 * 3 2 1 7 7 C 1.37875 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99862 * 172.23003 * 7 2 1 9 9 C 1.50701 * 120.00253 * 352.23185 * 7 2 1 10 10 C 1.52992 * 115.54915 * 84.78476 * 9 7 2 11 11 S 1.81397 * 109.47722 * 65.19581 * 10 9 7 12 12 O 1.42105 * 110.54218 * 62.18621 * 11 10 9 13 13 O 1.42109 * 110.54018 * 285.44379 * 11 10 9 14 14 N 1.65591 * 104.45467 * 173.81732 * 11 10 9 15 15 C 1.46496 * 120.00237 * 64.99715 * 14 11 10 16 16 C 1.52998 * 109.47231 * 165.00067 * 15 14 11 17 17 H 1.08997 * 109.47524 * 305.00360 * 16 15 14 18 18 C 1.53008 * 109.47117 * 184.99781 * 16 15 14 19 19 C 1.50705 * 109.47008 * 174.99950 * 18 16 15 20 20 O 1.20826 * 119.99623 * 0.02562 * 19 18 16 21 21 O 1.34222 * 119.99921 * 179.97438 * 19 18 16 22 22 C 1.50706 * 109.46949 * 65.00574 * 16 15 14 23 23 O 1.20820 * 120.00287 * 359.97438 * 22 16 15 24 24 O 1.34230 * 119.99989 * 180.02562 * 22 16 15 25 25 C 1.52999 * 117.49640 * 230.45403 * 9 7 2 26 26 C 1.53000 * 117.49897 * 299.11042 * 9 7 2 27 27 H 0.97001 * 119.99772 * 5.03286 * 1 2 3 28 28 H 1.09006 * 109.47113 * 305.19035 * 10 9 7 29 29 H 1.09005 * 109.47267 * 185.19707 * 10 9 7 30 30 H 0.97009 * 119.99829 * 245.27961 * 14 11 10 31 31 H 1.09002 * 109.47261 * 285.00418 * 15 14 11 32 32 H 1.08997 * 109.47304 * 45.00240 * 15 14 11 33 33 H 1.08994 * 109.47195 * 295.00479 * 18 16 15 34 34 H 1.08996 * 109.46671 * 55.00576 * 18 16 15 35 35 H 0.96699 * 116.99857 * 179.97438 * 21 19 18 36 36 H 0.96695 * 117.00241 * 179.97438 * 24 22 16 37 37 H 1.09007 * 117.49484 * 214.99935 * 25 9 7 38 38 H 1.08994 * 117.50331 * 0.02562 * 25 9 7 39 39 H 1.08998 * 117.49614 * 359.97438 * 26 9 7 40 40 H 1.08993 * 117.49872 * 144.96874 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0771 -1.1984 -0.1259 9 6 1.2614 -2.4931 0.1775 10 6 0.6670 -3.0924 -1.0985 11 16 2.0070 -3.5643 -2.2263 12 8 2.8267 -4.5639 -1.6362 13 8 2.5779 -2.4124 -2.8320 14 7 1.2438 -4.3446 -3.4715 15 6 0.3177 -3.6109 -4.3378 16 6 0.0447 -4.4291 -5.6014 17 1 0.9895 -4.6761 -6.0856 18 6 -0.8219 -3.6113 -6.5613 19 6 -0.9888 -4.3664 -7.8548 20 8 -0.4684 -5.4479 -7.9943 21 8 -1.7163 -3.8380 -8.8513 22 6 -0.6772 -5.6992 -5.2313 23 8 -0.9453 -5.9268 -4.0754 24 8 -1.0214 -6.5781 -6.1857 25 6 1.7805 -3.4649 1.2392 26 6 0.4827 -2.6898 1.4798 27 1 -0.4850 0.8368 -0.0737 28 1 0.0274 -2.3544 -1.5828 29 1 0.0776 -3.9738 -0.8457 30 1 1.4067 -5.2885 -3.6249 31 1 -0.6185 -3.4397 -3.8064 32 1 0.7594 -2.6533 -4.6134 33 1 -1.7999 -3.4401 -6.1116 34 1 -0.3403 -2.6537 -6.7592 35 1 -1.7945 -4.3593 -9.6619 36 1 -1.4826 -7.3784 -5.8998 37 1 1.6984 -4.5312 1.0285 38 1 2.6592 -3.1645 1.8099 39 1 0.5082 -1.8797 2.2086 40 1 -0.4534 -3.2456 1.4273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574329234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:23 Heat of formation + Delta-G solvation = -230.586956 kcal Electronic energy + Delta-G solvation = -27838.007703 eV Core-core repulsion = 23553.039980 eV Total energy + Delta-G solvation = -4284.967724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.101 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.05280 -39.99478 -36.82198 -36.71023 -36.47402 -36.20439 -35.53989 -35.04911 -32.82533 -32.03025 -28.12778 -27.51709 -25.43607 -24.70796 -22.20584 -21.18172 -20.61370 -19.63258 -18.62993 -18.48192 -18.10782 -17.45265 -17.07592 -16.85366 -16.36493 -15.73684 -15.72038 -15.48243 -15.04890 -14.70657 -14.28971 -14.05222 -13.76639 -13.35777 -13.15086 -13.12243 -12.83325 -12.56613 -11.99645 -11.87655 -11.79733 -11.64231 -11.53534 -11.28516 -11.22656 -11.13106 -11.01012 -10.90030 -10.78645 -10.59958 -10.58556 -10.43129 -10.10068 -9.71864 -9.23694 -8.93898 -8.54876 -8.06537 -6.12783 -4.23343 1.09226 1.95483 2.00108 2.64827 2.83795 3.33095 3.34772 3.41551 3.44406 4.11635 4.29572 4.37996 4.56601 4.58576 4.96720 5.00559 5.06626 5.12550 5.17870 5.24085 5.26993 5.42003 5.64920 5.70875 5.99357 6.06826 6.22943 6.30652 6.36945 6.41139 6.65022 6.75721 7.01528 7.20382 7.28597 7.41893 7.62087 7.77116 7.81316 8.22523 8.81927 9.47530 10.94836 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.003539 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.490138 B = 7908.925117 C = 8737.400321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.083 3.917 3 Si 0.891 3.109 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.552 4.552 11 S 2.609 3.391 12 O -0.973 6.973 13 O -0.951 6.951 14 N -1.128 6.128 15 C 0.132 3.868 16 C -0.078 4.078 17 H 0.128 0.872 18 C -0.110 4.110 19 C 0.469 3.531 20 O -0.480 6.480 21 O -0.520 6.520 22 C 0.474 3.526 23 O -0.500 6.500 24 O -0.490 6.490 25 C -0.209 4.209 26 C -0.141 4.141 27 H 0.263 0.737 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.410 0.590 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.410 0.590 36 H 0.399 0.601 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 -8.595 -15.744 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.122 4.122 3 Si 0.717 3.283 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.041 3.959 10 C -0.686 4.686 11 S 2.706 3.294 12 O -0.963 6.963 13 O -0.940 6.940 14 N -0.884 5.884 15 C 0.004 3.996 16 C -0.099 4.099 17 H 0.146 0.854 18 C -0.148 4.148 19 C 0.309 3.691 20 O -0.366 6.366 21 O -0.332 6.332 22 C 0.315 3.685 23 O -0.388 6.388 24 O -0.300 6.300 25 C -0.246 4.246 26 C -0.180 4.180 27 H 0.073 0.927 28 H 0.151 0.849 29 H 0.120 0.880 30 H 0.242 0.758 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.135 0.865 34 H 0.148 0.852 35 H 0.269 0.731 36 H 0.257 0.743 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.348 -7.907 -15.119 17.880 hybrid contribution -0.801 -0.446 -0.296 0.964 sum -6.149 -8.353 -15.415 18.580 Atomic orbital electron populations 1.69977 1.06020 1.27240 1.47801 1.24943 0.94792 0.99153 0.93340 0.86659 0.79908 0.82432 0.79265 1.19470 1.21148 1.19926 1.20496 0.93670 0.88629 1.52529 0.91404 1.18279 0.99006 0.94294 0.84354 1.29954 1.16439 1.08596 1.13564 1.05114 0.76430 0.73638 0.74227 1.93508 1.65556 1.59461 1.77814 1.93532 1.74999 1.50859 1.74652 1.55908 1.61773 1.22373 1.48368 1.21131 0.94875 0.94810 0.88739 1.21192 1.00496 0.90447 0.97763 0.85411 1.21262 1.03696 1.00284 0.89553 1.23154 0.75620 0.84752 0.85564 1.90815 1.44659 1.20561 1.80516 1.84514 1.67857 1.53614 1.27221 1.23236 0.76528 0.85324 0.83366 1.90785 1.50884 1.76353 1.20753 1.84896 1.71141 1.33053 1.40882 1.23198 0.98648 0.96106 1.06642 1.22548 0.92608 1.01012 1.01869 0.92702 0.84870 0.87998 0.75773 0.90368 0.88081 0.86489 0.85150 0.73073 0.74325 0.90659 0.89551 0.89615 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.69 12.98 55.43 0.72 -22.97 16 2 C 0.08 2.22 5.38 -17.82 -0.10 2.13 16 3 Si 0.89 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.02 8.18 -34.44 -0.28 -14.30 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 C 0.04 1.05 1.32 -155.66 -0.21 0.85 16 10 C -0.55 -11.64 5.93 37.15 0.22 -11.42 16 11 S 2.61 52.48 5.19 -107.50 -0.56 51.92 16 12 O -0.97 -21.74 18.08 -57.54 -1.04 -22.78 16 13 O -0.95 -21.87 17.17 -57.54 -0.99 -22.85 16 14 N -1.13 -16.94 5.37 -10.62 -0.06 -17.00 16 15 C 0.13 1.58 5.08 -4.04 -0.02 1.56 16 16 C -0.08 -0.74 2.10 -91.77 -0.19 -0.94 16 17 H 0.13 1.16 7.96 -51.93 -0.41 0.75 16 18 C -0.11 -0.75 5.28 -27.88 -0.15 -0.89 16 19 C 0.47 3.73 7.87 36.01 0.28 4.01 16 20 O -0.48 -5.12 13.53 -26.93 -0.36 -5.49 16 21 O -0.52 -3.14 13.42 -39.24 -0.53 -3.67 16 22 C 0.47 5.17 7.18 36.01 0.26 5.43 16 23 O -0.50 -6.92 15.80 -18.75 -0.30 -7.21 16 24 O -0.49 -4.55 9.73 -47.44 -0.46 -5.01 16 25 C -0.21 -4.66 9.96 -26.70 -0.27 -4.93 16 26 C -0.14 -3.25 9.49 -26.70 -0.25 -3.51 16 27 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 28 H 0.13 2.83 8.14 -51.92 -0.42 2.41 16 29 H 0.10 1.90 8.09 -51.92 -0.42 1.48 16 30 H 0.41 5.69 7.76 -34.46 -0.27 5.42 16 31 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 32 H 0.10 1.14 7.69 -51.93 -0.40 0.74 16 33 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.41 0.91 9.10 45.56 0.41 1.33 16 36 H 0.40 2.24 9.10 45.56 0.41 2.65 16 37 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 39 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -37.52 360.73 -7.45 -44.97 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -3.59 Total: 10.66 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -0.70 Total: -22.02 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.66 Total: -39.97 kcal Atomic # 8 Polarization: -63.33 SS G_CDS: -3.68 Total: -67.01 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 52.48 SS G_CDS: -0.56 Total: 51.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.52 -7.45 -44.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574329234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.618 kcal (2) G-P(sol) polarization free energy of solvation -37.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds