Wall clock time and date at job start Tue Mar 31 2020 18:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00029 * 2 1 4 4 H 1.48500 * 109.47344 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47043 * 300.00461 * 3 2 1 6 6 H 1.48498 * 109.47118 * 60.00431 * 3 2 1 7 7 C 1.37880 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99798 * 179.38812 * 7 2 1 9 9 C 1.50704 * 120.00000 * 359.66031 * 7 2 1 10 10 C 1.52999 * 115.54751 * 274.93505 * 9 7 2 11 11 S 1.81399 * 109.47446 * 294.54676 * 10 9 7 12 12 O 1.42099 * 110.54268 * 292.20372 * 11 10 9 13 13 O 1.42103 * 110.54225 * 68.95649 * 11 10 9 14 14 N 1.65597 * 104.44909 * 180.58164 * 11 10 9 15 15 C 1.46499 * 120.00047 * 64.99639 * 14 11 10 16 16 H 1.08996 * 109.47130 * 25.00117 * 15 14 11 17 17 C 1.53001 * 109.47283 * 144.99984 * 15 14 11 18 18 C 1.53001 * 109.47326 * 295.00409 * 17 15 14 19 19 C 1.50701 * 109.47432 * 179.97438 * 18 17 15 20 20 O 1.20825 * 119.99822 * 0.02562 * 19 18 17 21 21 O 1.34230 * 119.99905 * 179.97438 * 19 18 17 22 22 C 1.50697 * 109.47665 * 264.99969 * 15 14 11 23 23 O 1.20833 * 119.99808 * 0.02562 * 22 15 14 24 24 O 1.34228 * 120.00629 * 179.97438 * 22 15 14 25 25 C 1.52997 * 117.49635 * 129.26946 * 9 7 2 26 26 C 1.52997 * 117.49760 * 60.60832 * 9 7 2 27 27 H 0.96999 * 120.00328 * 5.01008 * 1 2 3 28 28 H 1.09004 * 109.46743 * 54.54854 * 10 9 7 29 29 H 1.09000 * 109.46950 * 174.54213 * 10 9 7 30 30 H 0.96999 * 120.00306 * 245.00098 * 14 11 10 31 31 H 1.09003 * 109.47207 * 55.00201 * 17 15 14 32 32 H 1.08998 * 109.47448 * 174.99878 * 17 15 14 33 33 H 1.09003 * 109.46808 * 300.00037 * 18 17 15 34 34 H 1.09007 * 109.46721 * 59.99430 * 18 17 15 35 35 H 0.96698 * 116.99690 * 179.97438 * 21 19 18 36 36 H 0.96694 * 117.00186 * 179.97438 * 24 22 15 37 37 H 1.09007 * 117.50005 * 359.97438 * 25 9 7 38 38 H 1.08998 * 117.49619 * 145.02003 * 25 9 7 39 39 H 1.09003 * 117.49779 * 214.97624 * 26 9 7 40 40 H 1.09005 * 117.50044 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0105 9 6 1.2510 -2.4992 0.0066 10 6 0.8253 -3.0078 1.3854 11 16 2.2992 -3.4144 2.3616 12 8 2.9670 -4.5411 1.8105 13 8 3.0130 -2.2338 2.7020 14 7 1.7005 -3.9605 3.8058 15 6 0.9145 -5.1958 3.8527 16 1 1.1833 -5.8298 3.0079 17 6 1.2061 -5.9366 5.1593 18 6 2.6684 -6.3864 5.1751 19 6 2.9559 -7.1155 6.4623 20 8 2.0808 -7.2609 7.2827 21 8 4.1838 -7.6043 6.6970 22 6 -0.5530 -4.8606 3.7823 23 8 -0.9062 -3.7079 3.7007 24 8 -1.4679 -5.8424 3.8091 25 6 1.6363 -3.5431 -1.0434 26 6 0.3149 -2.7809 -1.1703 27 1 -0.4850 0.8368 -0.0734 28 1 0.2526 -2.2342 1.8970 29 1 0.2089 -3.8993 1.2694 30 1 1.8703 -3.4624 4.6206 31 1 1.0214 -5.2716 6.0030 32 1 0.5568 -6.8088 5.2353 33 1 2.8531 -7.0514 4.3314 34 1 3.3177 -5.5141 5.0991 35 1 4.3202 -8.0640 7.5367 36 1 -2.3969 -5.5782 3.7618 37 1 2.4346 -3.2858 -1.7397 38 1 1.5861 -4.5922 -0.7521 39 1 -0.6041 -3.3290 -0.9625 40 1 0.2437 -2.0221 -1.9496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580651614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:27 Heat of formation + Delta-G solvation = -234.084383 kcal Electronic energy + Delta-G solvation = -28120.847613 eV Core-core repulsion = 23835.728229 eV Total energy + Delta-G solvation = -4285.119384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.101 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70781 -40.29073 -36.98982 -36.76566 -36.42014 -36.31234 -35.88401 -35.22058 -32.29582 -32.00856 -28.42358 -28.19341 -25.44068 -24.40802 -21.60354 -21.21177 -21.08139 -19.87311 -18.93873 -18.48201 -18.10545 -17.33204 -17.21311 -16.67742 -16.43711 -16.33415 -15.72060 -15.44185 -15.04277 -14.73395 -14.47307 -14.05507 -13.79566 -13.72577 -13.16511 -13.05995 -12.74657 -12.24896 -11.97243 -11.83583 -11.82145 -11.62030 -11.51000 -11.41528 -11.30991 -11.23765 -11.02458 -10.97503 -10.92882 -10.83834 -10.57740 -10.46070 -10.12850 -9.85061 -9.49530 -8.99873 -8.53913 -8.10650 -6.10009 -4.22312 0.91673 1.92219 2.02896 2.61414 2.81615 3.28652 3.30586 3.39255 3.46506 4.31495 4.36942 4.39622 4.43571 4.60242 4.77242 4.89935 5.05839 5.12478 5.16775 5.19682 5.32457 5.35871 5.65004 5.70268 5.73217 5.98857 6.21069 6.24371 6.36481 6.40112 6.63329 6.70388 6.95040 7.01500 7.25155 7.42328 7.59685 7.76988 7.83075 8.20761 8.83974 9.49360 10.97141 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.003807 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.829623 B = 7353.472190 C = 7900.106534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.079 3.921 3 Si 0.893 3.107 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.512 4.512 8 H 0.069 0.931 9 C 0.039 3.961 10 C -0.542 4.542 11 S 2.598 3.402 12 O -0.971 6.971 13 O -0.938 6.938 14 N -1.110 6.110 15 C 0.163 3.837 16 H 0.135 0.865 17 C -0.106 4.106 18 C -0.118 4.118 19 C 0.482 3.518 20 O -0.518 6.518 21 O -0.516 6.516 22 C 0.451 3.549 23 O -0.484 6.484 24 O -0.516 6.516 25 C -0.212 4.212 26 C -0.134 4.134 27 H 0.262 0.738 28 H 0.141 0.859 29 H 0.090 0.910 30 H 0.419 0.581 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.410 0.590 36 H 0.412 0.588 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.291 -15.064 10.601 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.549 4.549 8 H 0.088 0.912 9 C 0.037 3.963 10 C -0.676 4.676 11 S 2.696 3.304 12 O -0.961 6.961 13 O -0.928 6.928 14 N -0.865 5.865 15 C 0.052 3.948 16 H 0.153 0.847 17 C -0.145 4.145 18 C -0.156 4.156 19 C 0.325 3.675 20 O -0.407 6.407 21 O -0.327 6.327 22 C 0.289 3.711 23 O -0.369 6.369 24 O -0.327 6.327 25 C -0.249 4.249 26 C -0.173 4.173 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.108 0.892 30 H 0.253 0.747 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.269 0.731 36 H 0.271 0.729 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.057 -14.598 10.179 17.828 hybrid contribution -1.059 1.125 0.831 1.754 sum -0.002 -13.474 11.010 17.400 Atomic orbital electron populations 1.70016 1.05970 1.27028 1.47810 1.24967 0.94823 0.99261 0.93533 0.86508 0.80759 0.83188 0.77575 1.19152 1.20974 1.20640 1.20562 0.92845 0.88248 1.53220 0.91246 1.18341 1.00286 0.94195 0.83525 1.29962 1.17034 1.08699 1.11867 1.05559 0.77533 0.73973 0.73374 1.93508 1.71986 1.52512 1.78075 1.93580 1.69954 1.48129 1.81186 1.56161 1.67945 1.34062 1.28311 1.20213 0.84110 0.87548 1.02882 0.84734 1.21611 0.95539 1.01724 0.95580 1.21393 0.98514 1.02135 0.93548 1.23473 0.79348 0.75814 0.88841 1.90736 1.46655 1.55689 1.47617 1.84563 1.34075 1.68904 1.45193 1.24176 0.90109 0.83719 0.73104 1.90831 1.81593 1.21322 1.43136 1.84492 1.21333 1.41450 1.85471 1.23238 1.00237 0.95757 1.05701 1.22502 0.91116 1.01052 1.02649 0.92846 0.84090 0.89179 0.74673 0.89412 0.88019 0.86314 0.86641 0.73143 0.72895 0.89455 0.90780 0.91733 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.41 12.74 55.43 0.71 -23.70 16 2 C 0.08 2.18 5.42 -17.82 -0.10 2.08 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.51 -13.99 7.96 -34.44 -0.27 -14.26 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.04 0.95 1.38 -155.66 -0.21 0.73 16 10 C -0.54 -11.45 4.64 37.16 0.17 -11.27 16 11 S 2.60 49.53 5.25 -107.50 -0.56 48.97 16 12 O -0.97 -18.89 17.39 -57.54 -1.00 -19.89 16 13 O -0.94 -21.53 17.46 -57.54 -1.00 -22.53 16 14 N -1.11 -15.07 4.30 -5.88 -0.03 -15.10 16 15 C 0.16 1.80 2.71 -69.08 -0.19 1.61 16 16 H 0.14 1.32 7.48 -51.93 -0.39 0.93 16 17 C -0.11 -0.92 4.07 -26.73 -0.11 -1.03 16 18 C -0.12 -0.98 5.70 -27.88 -0.16 -1.14 16 19 C 0.48 4.35 8.33 36.01 0.30 4.65 16 20 O -0.52 -6.06 16.74 -18.75 -0.31 -6.37 16 21 O -0.52 -3.71 13.42 -39.26 -0.53 -4.23 16 22 C 0.45 5.46 7.07 36.00 0.25 5.72 16 23 O -0.48 -7.69 15.72 -18.76 -0.29 -7.99 16 24 O -0.52 -4.63 13.23 -39.25 -0.52 -5.15 16 25 C -0.21 -4.56 9.96 -26.69 -0.27 -4.83 16 26 C -0.13 -3.06 9.25 -26.69 -0.25 -3.30 16 27 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 28 H 0.14 3.28 7.84 -51.92 -0.41 2.87 16 29 H 0.09 1.63 7.61 -51.92 -0.39 1.24 16 30 H 0.42 4.93 8.80 -34.47 -0.30 4.62 16 31 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.10 0.80 7.95 -51.93 -0.41 0.38 16 33 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.12 0.95 7.75 -51.93 -0.40 0.55 16 35 H 0.41 1.22 9.10 45.56 0.41 1.64 16 36 H 0.41 2.24 9.10 45.56 0.41 2.66 16 37 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -37.32 364.17 -7.46 -44.78 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -3.56 Total: 10.15 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -0.83 Total: -21.04 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.68 Total: -38.80 kcal Atomic # 8 Polarization: -62.51 SS G_CDS: -3.66 Total: -66.17 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 49.53 SS G_CDS: -0.56 Total: 48.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.32 -7.46 -44.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580651614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.306 kcal (2) G-P(sol) polarization free energy of solvation -37.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds