Wall clock time and date at job start Tue Mar 31 2020 18:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00029 * 2 1 4 4 H 1.48500 * 109.47344 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47043 * 300.00461 * 3 2 1 6 6 H 1.48498 * 109.47118 * 60.00431 * 3 2 1 7 7 C 1.37880 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99798 * 179.38812 * 7 2 1 9 9 C 1.50704 * 120.00000 * 359.66031 * 7 2 1 10 10 C 1.52999 * 115.54751 * 274.93505 * 9 7 2 11 11 S 1.81399 * 109.47446 * 294.54676 * 10 9 7 12 12 O 1.42099 * 110.54268 * 292.20372 * 11 10 9 13 13 O 1.42103 * 110.54225 * 68.95649 * 11 10 9 14 14 N 1.65597 * 104.44909 * 180.58164 * 11 10 9 15 15 C 1.46499 * 120.00047 * 64.99639 * 14 11 10 16 16 H 1.08996 * 109.47130 * 25.00117 * 15 14 11 17 17 C 1.53001 * 109.47283 * 144.99984 * 15 14 11 18 18 C 1.53001 * 109.47326 * 295.00409 * 17 15 14 19 19 C 1.50701 * 109.47432 * 179.97438 * 18 17 15 20 20 O 1.20825 * 119.99822 * 0.02562 * 19 18 17 21 21 O 1.34230 * 119.99905 * 179.97438 * 19 18 17 22 22 C 1.50697 * 109.47665 * 264.99969 * 15 14 11 23 23 O 1.20833 * 119.99808 * 0.02562 * 22 15 14 24 24 O 1.34228 * 120.00629 * 179.97438 * 22 15 14 25 25 C 1.52997 * 117.49635 * 129.26946 * 9 7 2 26 26 C 1.52997 * 117.49760 * 60.60832 * 9 7 2 27 27 H 0.96999 * 120.00328 * 5.01008 * 1 2 3 28 28 H 1.09004 * 109.46743 * 54.54854 * 10 9 7 29 29 H 1.09000 * 109.46950 * 174.54213 * 10 9 7 30 30 H 0.96999 * 120.00306 * 245.00098 * 14 11 10 31 31 H 1.09003 * 109.47207 * 55.00201 * 17 15 14 32 32 H 1.08998 * 109.47448 * 174.99878 * 17 15 14 33 33 H 1.09003 * 109.46808 * 300.00037 * 18 17 15 34 34 H 1.09007 * 109.46721 * 59.99430 * 18 17 15 35 35 H 0.96698 * 116.99690 * 179.97438 * 21 19 18 36 36 H 0.96694 * 117.00186 * 179.97438 * 24 22 15 37 37 H 1.09007 * 117.50005 * 359.97438 * 25 9 7 38 38 H 1.08998 * 117.49619 * 145.02003 * 25 9 7 39 39 H 1.09003 * 117.49779 * 214.97624 * 26 9 7 40 40 H 1.09005 * 117.50044 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0105 9 6 1.2510 -2.4992 0.0066 10 6 0.8253 -3.0078 1.3854 11 16 2.2992 -3.4144 2.3616 12 8 2.9670 -4.5411 1.8105 13 8 3.0130 -2.2338 2.7020 14 7 1.7005 -3.9605 3.8058 15 6 0.9145 -5.1958 3.8527 16 1 1.1833 -5.8298 3.0079 17 6 1.2061 -5.9366 5.1593 18 6 2.6684 -6.3864 5.1751 19 6 2.9559 -7.1155 6.4623 20 8 2.0808 -7.2609 7.2827 21 8 4.1838 -7.6043 6.6970 22 6 -0.5530 -4.8606 3.7823 23 8 -0.9062 -3.7079 3.7007 24 8 -1.4679 -5.8424 3.8091 25 6 1.6363 -3.5431 -1.0434 26 6 0.3149 -2.7809 -1.1703 27 1 -0.4850 0.8368 -0.0734 28 1 0.2526 -2.2342 1.8970 29 1 0.2089 -3.8993 1.2694 30 1 1.8703 -3.4624 4.6206 31 1 1.0214 -5.2716 6.0030 32 1 0.5568 -6.8088 5.2353 33 1 2.8531 -7.0514 4.3314 34 1 3.3177 -5.5141 5.0991 35 1 4.3202 -8.0640 7.5367 36 1 -2.3969 -5.5782 3.7618 37 1 2.4346 -3.2858 -1.7397 38 1 1.5861 -4.5922 -0.7521 39 1 -0.6041 -3.3290 -0.9625 40 1 0.2437 -2.0221 -1.9496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580651614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:26 Heat of formation + Delta-G solvation = -264.778937 kcal Electronic energy + Delta-G solvation = -28122.178629 eV Core-core repulsion = 23835.728229 eV Total energy + Delta-G solvation = -4286.450399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.101 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.54153 -41.07202 -38.56054 -38.10034 -37.64848 -37.13405 -36.90398 -36.72444 -34.06432 -33.17611 -29.87393 -29.30075 -27.48261 -25.17210 -22.97890 -22.46747 -21.80963 -21.53290 -20.43511 -19.26347 -19.01644 -18.51677 -18.38628 -18.14945 -17.55573 -17.08786 -16.84594 -16.71352 -16.53052 -16.40166 -15.86199 -15.59048 -14.99048 -14.74861 -14.48863 -13.87229 -13.79707 -13.66872 -13.56017 -13.16905 -13.10249 -12.97350 -12.92206 -12.85690 -12.62045 -12.48688 -12.43750 -12.38047 -12.25213 -12.06163 -12.05386 -11.83055 -11.59586 -11.50265 -10.94266 -10.79937 -10.51570 -9.89125 -8.17209 -6.33204 -0.59029 1.10932 1.25806 1.36359 1.41079 1.52113 1.64887 2.04038 2.30988 2.40150 2.89298 3.09606 3.30685 3.40593 3.55076 3.67508 3.86092 4.00882 4.08020 4.22372 4.32416 4.45348 4.51859 4.56651 4.64432 4.72921 4.86610 4.96455 4.98605 5.07549 5.23814 5.47872 5.61895 5.62230 5.67989 5.73743 5.91838 6.22722 6.74836 6.96478 7.04877 7.39731 8.89558 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.003807 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.829623 B = 7353.472190 C = 7900.106534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.036 3.964 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.280 1.280 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.005 3.995 10 C -0.546 4.546 11 S 2.626 3.374 12 O -0.972 6.972 13 O -0.983 6.983 14 N -1.096 6.096 15 C 0.156 3.844 16 H 0.154 0.846 17 C -0.097 4.097 18 C -0.123 4.123 19 C 0.490 3.510 20 O -0.550 6.550 21 O -0.515 6.515 22 C 0.457 3.543 23 O -0.529 6.529 24 O -0.502 6.502 25 C -0.192 4.192 26 C -0.137 4.137 27 H 0.263 0.737 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.429 0.571 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.116 0.884 35 H 0.428 0.572 36 H 0.429 0.571 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 -17.080 11.178 20.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.166 4.166 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.206 1.206 7 C -0.563 4.563 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.678 4.678 11 S 2.722 3.278 12 O -0.962 6.962 13 O -0.973 6.973 14 N -0.856 5.856 15 C 0.047 3.953 16 H 0.172 0.828 17 C -0.136 4.136 18 C -0.160 4.160 19 C 0.334 3.666 20 O -0.441 6.441 21 O -0.329 6.329 22 C 0.297 3.703 23 O -0.417 6.417 24 O -0.315 6.315 25 C -0.229 4.229 26 C -0.176 4.176 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.265 0.735 31 H 0.104 0.896 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.134 0.866 35 H 0.289 0.711 36 H 0.291 0.709 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.275 -16.639 10.744 19.848 hybrid contribution -1.132 1.606 0.713 2.091 sum 0.143 -15.033 11.458 18.902 Atomic orbital electron populations 1.70082 1.06734 1.27526 1.48875 1.25570 0.95579 1.01761 0.93679 0.85823 0.79600 0.80448 0.77913 1.19350 1.19685 1.20599 1.20778 0.92422 0.90229 1.52864 0.92845 1.18468 1.01427 0.94298 0.85533 1.29876 1.18522 1.08920 1.10464 1.04460 0.76510 0.73093 0.73750 1.93497 1.71773 1.52010 1.78877 1.93520 1.71133 1.50489 1.82173 1.55634 1.68234 1.34976 1.26721 1.20579 0.83285 0.86411 1.05071 0.82838 1.21561 0.96306 1.01774 0.93935 1.21469 0.98071 1.02532 0.93958 1.23518 0.79315 0.75234 0.88551 1.90731 1.47625 1.57077 1.48648 1.84524 1.33053 1.68754 1.46542 1.24292 0.90845 0.83300 0.71867 1.90841 1.82333 1.23090 1.45447 1.84449 1.22374 1.40148 1.84551 1.23298 0.99108 0.96663 1.03881 1.22430 0.92445 1.01125 1.01647 0.92828 0.86724 0.86473 0.73492 0.89556 0.86589 0.84536 0.86616 0.71066 0.70897 0.89572 0.87795 0.90051 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.96 12.74 21.45 0.27 -50.69 16 2 C 0.04 2.03 5.42 84.66 0.46 2.49 16 3 Si 0.94 44.85 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.53 -29.18 7.96 25.60 0.20 -28.98 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.00 0.24 1.38 -52.93 -0.07 0.17 16 10 C -0.55 -22.77 4.64 71.98 0.33 -22.44 16 11 S 2.63 97.59 5.25 -56.49 -0.30 97.30 16 12 O -0.97 -35.66 17.39 -127.65 -2.22 -37.88 16 13 O -0.98 -45.38 17.46 -127.65 -2.23 -47.61 16 14 N -1.10 -28.13 4.30 -172.53 -0.74 -28.87 16 15 C 0.16 3.04 2.71 44.24 0.12 3.16 16 16 H 0.15 2.45 7.48 -2.39 -0.02 2.43 16 17 C -0.10 -1.42 4.07 30.59 0.12 -1.30 16 18 C -0.12 -1.69 5.70 29.85 0.17 -1.52 16 19 C 0.49 7.72 8.33 71.24 0.59 8.32 16 20 O -0.55 -11.86 16.74 21.97 0.37 -11.50 16 21 O -0.52 -6.18 13.42 -51.42 -0.69 -6.87 16 22 C 0.46 10.12 7.07 71.23 0.50 10.62 16 23 O -0.53 -16.37 15.72 21.94 0.34 -16.02 16 24 O -0.50 -7.59 13.23 -51.40 -0.68 -8.27 16 25 C -0.19 -7.99 9.96 30.62 0.30 -7.68 16 26 C -0.14 -6.21 9.25 30.62 0.28 -5.93 16 27 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 28 H 0.11 5.43 7.84 -2.39 -0.02 5.41 16 29 H 0.12 4.06 7.61 -2.39 -0.02 4.04 16 30 H 0.43 9.61 8.80 -96.75 -0.85 8.76 16 31 H 0.09 1.33 8.10 -2.39 -0.02 1.31 16 32 H 0.12 1.44 7.95 -2.39 -0.02 1.42 16 33 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.12 1.63 7.75 -2.38 -0.02 1.61 16 35 H 0.43 1.60 9.10 -74.06 -0.67 0.93 16 36 H 0.43 3.56 9.10 -74.06 -0.67 2.89 16 37 H 0.09 3.56 8.14 -2.38 -0.02 3.54 16 38 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 39 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.07 3.24 8.14 -2.38 -0.02 3.22 16 Total: -1.00 -80.69 364.17 -1.90 -82.59 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -1.08 Total: 24.04 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 3.02 Total: -43.09 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -0.47 Total: -79.56 kcal Atomic # 8 Polarization: -123.05 SS G_CDS: -5.11 Total: -128.15 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 97.59 SS G_CDS: -0.30 Total: 97.30 kcal Total: -80.69 -1.90 -82.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580651614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.188 kcal (2) G-P(sol) polarization free energy of solvation -80.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds