Wall clock time and date at job start Tue Mar 31 2020 19:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00031 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47030 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99867 * 179.97438 * 11 10 9 13 13 O 1.21359 * 120.00131 * 0.02562 * 12 11 10 14 14 C 1.49316 * 119.99804 * 180.02562 * 12 11 10 15 15 O 1.21395 * 120.00197 * 0.02562 * 14 12 11 16 16 N 1.34777 * 119.99809 * 180.02562 * 14 12 11 17 17 C 1.40245 * 120.00081 * 180.02562 * 16 14 12 18 18 C 1.35637 * 126.13905 * 359.68692 * 17 16 14 19 19 N 1.35834 * 107.83433 * 179.83918 * 18 17 16 20 20 H 0.97002 * 125.91089 * 180.16194 * 19 18 17 21 21 N 1.40046 * 108.18294 * 0.42539 * 19 18 17 22 22 C 1.31804 * 108.27570 * 359.73523 * 21 19 18 23 23 C 1.47780 * 126.00508 * 180.02562 * 22 21 19 24 24 N 1.30259 * 125.47438 * 179.65312 * 23 22 21 25 25 C 1.31385 * 117.01632 * 179.81639 * 24 23 22 26 26 C 1.33648 * 115.84889 * 0.48332 * 25 24 23 27 27 S 1.76177 * 125.47769 * 359.96306 * 23 22 21 28 28 H 0.96996 * 120.00393 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 30 30 H 1.09000 * 109.46978 * 300.00013 * 9 7 2 31 31 H 1.09000 * 109.46497 * 60.00269 * 10 9 7 32 32 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 33 33 H 0.96999 * 120.00085 * 0.02562 * 11 10 9 34 34 H 0.97004 * 120.00305 * 0.27153 * 16 14 12 35 35 H 1.07997 * 126.07891 * 359.97438 * 18 17 16 36 36 H 1.07991 * 122.07674 * 180.22879 * 25 24 23 37 37 H 1.08008 * 125.87925 * 179.77412 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4866 -2.6364 -0.0022 12 6 6.1605 -3.8036 -0.0018 13 8 5.5537 -4.8546 -0.0009 14 6 7.6536 -3.8035 -0.0024 15 8 8.2606 -2.7522 -0.0028 16 7 8.3276 -4.9707 -0.0025 17 6 9.7300 -4.9707 -0.0026 18 6 10.5299 -3.8753 -0.0085 19 7 11.8195 -4.3019 -0.0026 20 1 12.6064 -3.7346 -0.0026 21 7 11.8166 -5.7023 -0.0026 22 6 10.5642 -6.1130 -0.0026 23 6 10.1112 -7.5197 -0.0020 24 7 8.8698 -7.9141 0.0045 25 6 8.6554 -9.2103 0.0001 26 6 9.7469 -9.9815 -0.0005 27 16 11.1634 -8.9327 -0.0023 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6803 0.8889 30 1 3.8745 -0.6800 -0.8911 31 1 3.6579 -3.1504 -0.8908 32 1 3.6586 -3.1502 0.8892 33 1 5.9715 -1.7964 -0.0025 34 1 7.8426 -5.8108 -0.0062 35 1 10.2001 -2.8469 -0.0144 36 1 7.6590 -9.6268 0.0012 37 1 9.7589 -11.0615 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581468220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:08 Heat of formation + Delta-G solvation = 59.099883 kcal Electronic energy + Delta-G solvation = -24721.232280 eV Core-core repulsion = 20820.720742 eV Total energy + Delta-G solvation = -3900.511538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.91792 -40.36078 -39.71686 -38.40987 -35.64254 -34.74627 -32.88566 -32.74180 -30.34949 -30.18897 -29.49662 -26.14559 -25.93040 -24.03669 -22.54754 -21.85042 -20.88148 -20.01874 -19.93245 -18.83030 -18.18535 -17.62556 -17.07811 -16.63420 -16.12056 -16.05319 -15.51225 -15.44326 -14.81824 -14.67661 -14.56116 -14.22297 -14.18238 -14.06470 -13.66726 -13.19023 -13.13502 -12.62294 -11.85860 -11.66505 -11.55033 -11.44563 -11.34394 -11.25207 -10.70210 -10.45251 -10.31916 -10.17872 -9.96837 -9.77519 -9.51035 -9.33173 -9.05726 -8.79437 -8.61868 -8.16770 -6.12637 -4.13392 -0.08868 0.82650 1.21227 1.30260 1.45885 2.04366 2.17760 2.47980 2.76692 3.25946 3.34014 3.35364 3.36067 3.42801 3.87757 4.32711 4.37170 4.50272 4.61525 4.78675 5.01048 5.09283 5.18597 5.20391 5.40889 5.73292 5.95984 6.10238 6.20541 6.46332 6.49075 6.71940 6.83651 6.99849 7.10568 7.17847 7.27247 7.53061 7.61917 7.77857 8.16979 8.41445 8.90876 9.47189 11.00112 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.021187 B = 0.002230 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.231160 B =12553.106328 C =13853.887790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.689 5.689 12 C 0.504 3.496 13 O -0.520 6.520 14 C 0.506 3.494 15 O -0.518 6.518 16 N -0.606 5.606 17 C 0.036 3.964 18 C 0.049 3.951 19 N -0.454 5.454 20 H 0.452 0.548 21 N -0.255 5.255 22 C 0.124 3.876 23 C 0.138 3.862 24 N -0.458 5.458 25 C 0.047 3.953 26 C -0.250 4.250 27 S 0.135 5.865 28 H 0.265 0.735 29 H 0.025 0.975 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.409 0.591 34 H 0.436 0.564 35 H 0.213 0.787 36 H 0.183 0.817 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.351 -15.739 -0.017 31.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.006 3.994 11 N -0.340 5.340 12 C 0.283 3.717 13 O -0.397 6.397 14 C 0.288 3.712 15 O -0.394 6.394 16 N -0.254 5.254 17 C -0.071 4.071 18 C -0.099 4.099 19 N -0.168 5.168 20 H 0.298 0.702 21 N -0.083 5.083 22 C -0.044 4.044 23 C -0.138 4.138 24 N -0.174 5.174 25 C -0.105 4.105 26 C -0.390 4.390 27 S 0.389 5.611 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.245 0.755 34 H 0.277 0.723 35 H 0.230 0.770 36 H 0.200 0.800 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 28.935 -15.780 -0.002 32.959 hybrid contribution -0.953 0.990 -0.024 1.374 sum 27.982 -14.791 -0.026 31.651 Atomic orbital electron populations 1.69896 1.06288 1.27122 1.50224 1.24989 0.94771 0.99172 0.94286 0.86766 0.80335 0.83506 0.78593 1.20170 1.21257 1.18944 1.20874 0.88434 0.94964 1.51957 0.90508 1.19826 0.98111 0.90956 0.97238 1.21739 0.74514 1.00879 1.02310 1.46170 1.09538 1.07803 1.70504 1.19585 0.86915 0.85463 0.79745 1.90787 1.69279 1.30887 1.48709 1.20561 0.89525 0.83529 0.77537 1.90578 1.69451 1.31197 1.48167 1.42713 1.02986 1.10847 1.68816 1.17495 0.84063 0.91755 1.13833 1.23242 0.82800 1.00894 1.02977 1.46084 1.07759 1.04205 1.58722 0.70207 1.77484 1.17045 0.90500 1.23249 1.18925 0.90510 0.89030 1.05946 1.24221 0.90648 0.94170 1.04798 1.66354 1.18585 1.17063 1.15444 1.21684 1.00887 0.86351 1.01599 1.27203 0.94814 1.05334 1.11648 1.85152 1.10444 0.98048 1.67505 0.92502 0.95705 0.96132 0.91150 0.91119 0.75543 0.72299 0.77036 0.79979 0.79944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.52 -14.37 9.66 -34.44 -0.33 -14.71 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.02 -0.53 4.16 -27.88 -0.12 -0.64 16 10 C 0.13 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.69 -11.43 5.55 -60.78 -0.34 -11.76 16 12 C 0.50 8.25 7.88 -11.65 -0.09 8.15 16 13 O -0.52 -9.66 16.47 5.49 0.09 -9.57 16 14 C 0.51 7.24 7.85 -11.65 -0.09 7.15 16 15 O -0.52 -7.34 13.62 5.46 0.07 -7.27 16 16 N -0.61 -8.01 5.44 -10.32 -0.06 -8.07 16 17 C 0.04 0.44 6.92 -83.72 -0.58 -0.14 16 18 C 0.05 0.48 10.85 -16.71 -0.18 0.30 16 19 N -0.45 -3.56 7.38 30.67 0.23 -3.33 16 20 H 0.45 1.76 8.96 -182.64 -1.64 0.13 16 21 N -0.25 -2.63 12.74 33.43 0.43 -2.20 16 22 C 0.12 1.43 7.15 -82.76 -0.59 0.84 16 23 C 0.14 1.50 7.50 -14.32 -0.11 1.39 16 24 N -0.46 -5.09 8.90 -11.38 -0.10 -5.19 16 25 C 0.05 0.39 11.25 -19.35 -0.22 0.17 16 26 C -0.25 -1.66 11.35 29.12 0.33 -1.33 16 27 S 0.13 1.09 23.43 -107.50 -2.52 -1.43 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 30 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 31 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.41 6.12 7.94 -40.82 -0.32 5.80 16 34 H 0.44 5.91 6.55 -40.82 -0.27 5.64 16 35 H 0.21 1.99 5.83 -52.49 -0.31 1.69 16 36 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.18 0.64 8.06 -52.48 -0.42 0.22 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -33.19 344.11 -7.58 -40.77 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.58 Total: 7.34 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -2.10 Total: 5.54 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.93 Total: -56.77 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: 0.16 Total: -16.84 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.52 Total: -1.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.19 -7.58 -40.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581468220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.873 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds