Wall clock time and date at job start Tue Mar 31 2020 19:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00031 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47030 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99867 * 179.97438 * 11 10 9 13 13 O 1.21359 * 120.00131 * 0.02562 * 12 11 10 14 14 C 1.49316 * 119.99804 * 180.02562 * 12 11 10 15 15 O 1.21395 * 120.00197 * 0.02562 * 14 12 11 16 16 N 1.34777 * 119.99809 * 180.02562 * 14 12 11 17 17 C 1.40245 * 120.00081 * 180.02562 * 16 14 12 18 18 C 1.35637 * 126.13905 * 359.68692 * 17 16 14 19 19 N 1.35834 * 107.83433 * 179.83918 * 18 17 16 20 20 H 0.97002 * 125.91089 * 180.16194 * 19 18 17 21 21 N 1.40046 * 108.18294 * 0.42539 * 19 18 17 22 22 C 1.31804 * 108.27570 * 359.73523 * 21 19 18 23 23 C 1.47780 * 126.00508 * 180.02562 * 22 21 19 24 24 N 1.30259 * 125.47438 * 179.65312 * 23 22 21 25 25 C 1.31385 * 117.01632 * 179.81639 * 24 23 22 26 26 C 1.33648 * 115.84889 * 0.48332 * 25 24 23 27 27 S 1.76177 * 125.47769 * 359.96306 * 23 22 21 28 28 H 0.96996 * 120.00393 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 30 30 H 1.09000 * 109.46978 * 300.00013 * 9 7 2 31 31 H 1.09000 * 109.46497 * 60.00269 * 10 9 7 32 32 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 33 33 H 0.96999 * 120.00085 * 0.02562 * 11 10 9 34 34 H 0.97004 * 120.00305 * 0.27153 * 16 14 12 35 35 H 1.07997 * 126.07891 * 359.97438 * 18 17 16 36 36 H 1.07991 * 122.07674 * 180.22879 * 25 24 23 37 37 H 1.08008 * 125.87925 * 179.77412 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4866 -2.6364 -0.0022 12 6 6.1605 -3.8036 -0.0018 13 8 5.5537 -4.8546 -0.0009 14 6 7.6536 -3.8035 -0.0024 15 8 8.2606 -2.7522 -0.0028 16 7 8.3276 -4.9707 -0.0025 17 6 9.7300 -4.9707 -0.0026 18 6 10.5299 -3.8753 -0.0085 19 7 11.8195 -4.3019 -0.0026 20 1 12.6064 -3.7346 -0.0026 21 7 11.8166 -5.7023 -0.0026 22 6 10.5642 -6.1130 -0.0026 23 6 10.1112 -7.5197 -0.0020 24 7 8.8698 -7.9141 0.0045 25 6 8.6554 -9.2103 0.0001 26 6 9.7469 -9.9815 -0.0005 27 16 11.1634 -8.9327 -0.0023 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6803 0.8889 30 1 3.8745 -0.6800 -0.8911 31 1 3.6579 -3.1504 -0.8908 32 1 3.6586 -3.1502 0.8892 33 1 5.9715 -1.7964 -0.0025 34 1 7.8426 -5.8108 -0.0062 35 1 10.2001 -2.8469 -0.0144 36 1 7.6590 -9.6268 0.0012 37 1 9.7589 -11.0615 -0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581468220.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:07 Heat of formation + Delta-G solvation = 32.432921 kcal Electronic energy + Delta-G solvation = -24722.388646 eV Core-core repulsion = 20820.720742 eV Total energy + Delta-G solvation = -3901.667904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.76063 -41.51673 -40.37238 -39.64734 -37.01846 -35.97189 -34.76608 -33.54169 -32.12647 -30.88124 -30.38076 -27.60130 -26.74397 -25.42824 -23.45251 -22.79525 -22.49884 -21.13039 -20.87290 -19.63017 -19.00641 -18.85623 -18.70285 -17.87759 -17.26788 -16.71385 -16.67061 -16.40792 -16.18924 -16.05927 -15.72433 -15.34892 -15.11587 -15.11150 -14.67960 -14.59796 -14.55066 -13.90464 -13.36983 -13.05429 -12.79607 -12.44758 -12.34344 -12.27711 -12.19415 -12.16195 -11.75980 -11.48803 -11.40236 -10.90838 -10.77129 -10.72326 -10.42026 -10.24592 -9.72952 -9.02061 -8.28145 -6.34971 -0.75788 0.10785 0.19120 0.67608 0.70398 1.08673 1.33000 1.41605 1.43305 1.54486 1.62658 1.97883 2.21591 2.38409 2.47899 2.95072 3.07172 3.32650 3.58943 3.84279 4.22358 4.28887 4.37104 4.41829 4.42937 4.50276 4.57016 4.75149 4.99196 5.13729 5.27453 5.32925 5.40165 5.60836 5.85207 6.02840 6.21452 6.26763 6.37001 6.60733 6.64450 6.73011 6.88693 7.29532 8.88151 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.021187 B = 0.002230 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.231160 B =12553.106328 C =13853.887790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.238 1.238 7 C -0.535 4.535 8 H 0.035 0.965 9 C -0.017 4.017 10 C 0.141 3.859 11 N -0.682 5.682 12 C 0.506 3.494 13 O -0.545 6.545 14 C 0.512 3.488 15 O -0.518 6.518 16 N -0.598 5.598 17 C 0.001 3.999 18 C 0.065 3.935 19 N -0.433 5.433 20 H 0.469 0.531 21 N -0.263 5.263 22 C 0.118 3.882 23 C 0.101 3.899 24 N -0.481 5.481 25 C 0.022 3.978 26 C -0.226 4.226 27 S 0.157 5.843 28 H 0.268 0.732 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.420 0.580 34 H 0.433 0.567 35 H 0.221 0.779 36 H 0.200 0.800 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.436 -15.509 -0.013 34.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.192 4.192 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.574 4.574 8 H 0.053 0.947 9 C -0.055 4.055 10 C 0.019 3.981 11 N -0.334 5.334 12 C 0.287 3.713 13 O -0.423 6.423 14 C 0.294 3.706 15 O -0.394 6.394 16 N -0.245 5.245 17 C -0.106 4.106 18 C -0.084 4.084 19 N -0.149 5.149 20 H 0.319 0.681 21 N -0.091 5.091 22 C -0.050 4.050 23 C -0.174 4.174 24 N -0.199 5.199 25 C -0.129 4.129 26 C -0.366 4.366 27 S 0.410 5.590 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.258 0.742 34 H 0.273 0.727 35 H 0.237 0.763 36 H 0.217 0.783 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 32.107 -15.551 0.002 35.674 hybrid contribution -1.883 0.720 -0.027 2.016 sum 30.224 -14.831 -0.025 33.666 Atomic orbital electron populations 1.70061 1.08454 1.28360 1.52004 1.26018 0.95645 1.03678 0.93821 0.85611 0.79712 0.77739 0.79290 1.19096 1.21344 1.16115 1.21209 0.91282 0.93530 1.51372 0.94667 1.19696 0.94654 0.92805 0.98307 1.21306 0.76367 0.99057 1.01412 1.45894 1.08203 1.08625 1.70683 1.19926 0.88007 0.84755 0.78655 1.90776 1.70153 1.31776 1.49643 1.19958 0.88240 0.84011 0.78428 1.90575 1.69009 1.31065 1.48767 1.42592 1.03719 1.10174 1.68053 1.17760 0.83506 0.92952 1.16396 1.23311 0.83185 1.00649 1.01271 1.46128 1.07937 1.03707 1.57178 0.68084 1.77454 1.16580 0.91477 1.23595 1.19097 0.90598 0.89506 1.05777 1.24301 0.91369 0.94819 1.06932 1.66331 1.19279 1.18620 1.15621 1.22041 1.02332 0.85837 1.02716 1.27651 0.93549 1.06738 1.08678 1.85023 1.10371 0.96997 1.66626 0.92362 0.94425 0.94552 0.92195 0.92194 0.74242 0.72656 0.76274 0.78323 0.76506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.53 13.96 21.45 0.30 -58.23 16 2 C 0.01 0.32 5.47 84.65 0.46 0.79 16 3 Si 0.95 42.18 27.47 68.60 1.88 44.06 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 7 C -0.54 -29.88 9.66 25.60 0.25 -29.63 16 8 H 0.03 2.18 7.99 -2.91 -0.02 2.16 16 9 C -0.02 -0.73 4.16 29.85 0.12 -0.61 16 10 C 0.14 5.51 5.61 86.38 0.48 5.99 16 11 N -0.68 -21.84 5.55 -464.56 -2.58 -24.42 16 12 C 0.51 16.32 7.88 87.23 0.69 17.00 16 13 O -0.55 -20.43 16.47 -3.28 -0.05 -20.48 16 14 C 0.51 14.19 7.85 87.23 0.69 14.87 16 15 O -0.52 -13.78 13.62 -3.39 -0.05 -13.83 16 16 N -0.60 -15.63 5.44 -304.90 -1.66 -17.29 16 17 C 0.00 0.03 6.92 37.98 0.26 0.29 16 18 C 0.07 1.18 10.85 83.47 0.91 2.09 16 19 N -0.43 -6.00 7.38 -56.87 -0.42 -6.42 16 20 H 0.47 2.57 8.96 -213.35 -1.91 0.66 16 21 N -0.26 -5.10 12.74 -48.16 -0.61 -5.71 16 22 C 0.12 2.65 7.15 42.46 0.30 2.95 16 23 C 0.10 2.15 7.50 87.45 0.66 2.80 16 24 N -0.48 -10.58 8.90 -189.91 -1.69 -12.27 16 25 C 0.02 0.34 11.25 83.72 0.94 1.28 16 26 C -0.23 -2.50 11.35 66.78 0.76 -1.74 16 27 S 0.16 2.29 23.43 -56.49 -1.32 0.97 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.04 1.56 7.20 -2.38 -0.02 1.54 16 30 H 0.04 1.48 7.57 -2.39 -0.02 1.47 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.42 11.67 7.94 -92.71 -0.74 10.93 16 34 H 0.43 11.88 6.55 -92.71 -0.61 11.27 16 35 H 0.22 3.66 5.83 -2.91 -0.02 3.64 16 36 H 0.20 2.19 8.06 -2.92 -0.02 2.16 16 37 H 0.22 0.73 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -73.08 344.11 -1.81 -74.88 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -2.12 Total: 22.65 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 6.52 Total: 16.10 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -6.66 Total: -124.35 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.10 Total: -34.31 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.88 Total: 44.06 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.32 Total: 0.97 kcal Total: -73.08 -1.81 -74.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581468220.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.315 kcal (2) G-P(sol) polarization free energy of solvation -73.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds