Wall clock time and date at job start Tue Mar 31 2020 19:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86804 * 119.99728 * 2 1 4 4 H 1.48496 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47417 * 300.00313 * 3 2 1 6 6 H 1.48503 * 109.47002 * 60.00146 * 3 2 1 7 7 C 1.39939 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99935 * 197.85623 * 7 2 1 9 9 C 1.41394 * 119.99918 * 17.85315 * 7 2 1 10 10 C 1.40719 * 120.24460 * 204.37696 * 9 7 2 11 11 C 1.37614 * 119.74658 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24963 * 0.03303 * 11 10 9 13 13 C 1.50697 * 119.75259 * 179.97438 * 12 11 10 14 14 S 1.81400 * 109.47106 * 89.99818 * 13 12 11 15 15 O 1.42096 * 110.54096 * 291.62412 * 14 13 12 16 16 O 1.42097 * 110.54347 * 68.37970 * 14 13 12 17 17 N 1.65597 * 104.44925 * 180.02562 * 14 13 12 18 18 C 1.46505 * 120.00187 * 64.99961 * 17 14 13 19 19 C 1.52999 * 109.47347 * 165.00157 * 18 17 14 20 20 H 1.08996 * 109.47285 * 60.00028 * 19 18 17 21 21 O 1.42901 * 109.46809 * 300.00154 * 19 18 17 22 22 C 1.52995 * 109.47182 * 180.02562 * 19 18 17 23 23 F 1.39901 * 109.47244 * 64.99497 * 22 19 18 24 24 F 1.39902 * 109.47297 * 184.99687 * 22 19 18 25 25 C 1.38642 * 120.50139 * 0.24450 * 12 11 10 26 26 C 1.37625 * 120.24249 * 359.44934 * 25 12 11 27 27 H 0.96997 * 120.00535 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.12523 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.87932 * 179.97438 * 11 10 9 30 30 H 1.08999 * 109.47221 * 210.00119 * 13 12 11 31 31 H 1.08998 * 109.46871 * 329.99744 * 13 12 11 32 32 H 0.97002 * 120.00250 * 245.00506 * 17 14 13 33 33 H 1.09007 * 109.46925 * 285.00129 * 18 17 14 34 34 H 1.08996 * 109.46905 * 44.99952 * 18 17 14 35 35 H 0.96699 * 113.99823 * 299.99858 * 21 19 18 36 36 H 1.09007 * 109.47159 * 304.99726 * 22 19 18 37 37 H 1.07993 * 119.87779 * 179.70737 * 25 12 11 38 38 H 1.07998 * 120.12464 * 180.27581 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3465 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8834 2.3965 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2863 9 6 1.3521 -2.4068 -0.3765 10 6 1.8259 -3.6499 0.0821 11 6 1.1801 -4.8065 -0.2906 12 6 0.0670 -4.7502 -1.1151 13 6 -0.6314 -6.0237 -1.5167 14 16 -1.9230 -6.4133 -0.3041 15 8 -1.3441 -6.7735 0.9426 16 8 -2.9768 -5.4628 -0.3752 17 7 -2.6013 -7.8181 -0.8598 18 6 -1.8047 -9.0467 -0.9094 19 6 -2.7327 -10.2493 -1.0924 20 1 -3.2900 -10.1399 -2.0227 21 8 -3.6459 -10.3175 0.0046 22 6 -1.9008 -11.5323 -1.1435 23 9 -1.2753 -11.7321 0.0918 24 9 -2.7362 -12.6188 -1.4244 25 6 -0.4053 -3.5314 -1.5775 26 6 0.2212 -2.3616 -1.2125 27 1 -0.4851 0.8400 0.0004 28 1 2.6932 -3.6961 0.7241 29 1 1.5421 -5.7617 0.0598 30 1 -1.0832 -5.8957 -2.5004 31 1 0.0915 -6.8388 -1.5522 32 1 -3.5260 -7.8276 -1.1526 33 1 -1.1081 -8.9946 -1.7462 34 1 -1.2474 -9.1561 0.0209 35 1 -3.2185 -10.4154 0.8665 36 1 -1.1446 -11.4442 -1.9237 37 1 -1.2704 -3.4996 -2.2232 38 1 -0.1510 -1.4130 -1.5703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582357588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:46 Heat of formation + Delta-G solvation = -243.775826 kcal Electronic energy + Delta-G solvation = -26236.544354 eV Core-core repulsion = 21839.917202 eV Total energy + Delta-G solvation = -4396.627152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.94246 -47.97497 -39.57478 -38.90038 -38.06596 -36.92222 -35.95010 -35.49314 -33.20638 -31.27136 -31.21680 -29.52946 -26.25285 -25.97667 -23.12007 -22.98796 -22.14294 -20.37470 -19.29904 -18.93761 -18.82650 -18.53869 -18.09478 -17.48642 -17.18680 -17.09034 -16.27654 -16.21095 -15.97293 -15.71395 -15.64532 -15.31394 -14.80824 -14.38995 -14.33122 -14.27959 -13.91290 -13.86053 -13.69069 -13.50967 -13.24792 -13.11684 -13.08177 -13.02692 -12.99503 -12.76381 -12.72980 -12.19733 -12.10392 -11.94282 -11.54072 -11.34948 -11.11815 -11.04575 -10.45452 -9.46354 -9.26966 -8.71602 -6.40875 -0.74764 0.88373 1.07548 1.37773 1.48458 1.54020 1.83055 2.17820 2.62684 2.72678 2.92949 3.15036 3.28421 3.32644 3.35402 3.65755 3.75936 3.85728 4.07808 4.08073 4.16707 4.43127 4.46813 4.53048 4.69976 4.77847 4.83259 5.00494 5.08946 5.26504 5.35045 5.61707 5.84470 6.02607 6.04530 6.07493 6.29003 6.47681 6.61327 6.85156 6.93516 8.25163 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.034334 B = 0.002359 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.322295 B =11867.864021 C =12208.411485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.032 3.968 3 Si 0.987 3.013 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.266 1.266 7 C -0.489 4.489 8 H 0.082 0.918 9 C 0.084 3.916 10 C -0.246 4.246 11 C -0.075 4.075 12 C -0.233 4.233 13 C -0.518 4.518 14 S 2.597 3.403 15 O -0.998 6.998 16 O -1.004 7.004 17 N -1.107 6.107 18 C 0.069 3.931 19 C 0.058 3.942 20 H 0.155 0.845 21 O -0.563 6.563 22 C 0.227 3.773 23 F -0.215 7.215 24 F -0.213 7.213 25 C -0.092 4.092 26 C -0.196 4.196 27 H 0.291 0.709 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.424 0.576 33 H 0.126 0.874 34 H 0.084 0.916 35 H 0.390 0.610 36 H 0.168 0.832 37 H 0.114 0.886 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 -18.926 -7.502 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.184 4.184 3 Si 0.807 3.193 4 H -0.178 1.178 5 H -0.187 1.187 6 H -0.191 1.191 7 C -0.518 4.518 8 H 0.101 0.899 9 C 0.081 3.919 10 C -0.266 4.266 11 C -0.094 4.094 12 C -0.238 4.238 13 C -0.650 4.650 14 S 2.697 3.303 15 O -0.988 6.988 16 O -0.995 6.995 17 N -0.868 5.868 18 C -0.058 4.058 19 C -0.003 4.003 20 H 0.173 0.827 21 O -0.370 6.370 22 C 0.173 3.827 23 F -0.196 7.196 24 F -0.194 7.194 25 C -0.112 4.112 26 C -0.216 4.216 27 H 0.102 0.898 28 H 0.123 0.877 29 H 0.147 0.853 30 H 0.176 0.824 31 H 0.183 0.817 32 H 0.260 0.740 33 H 0.144 0.856 34 H 0.102 0.898 35 H 0.240 0.760 36 H 0.185 0.815 37 H 0.132 0.868 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.195 -18.367 -7.053 19.933 hybrid contribution 0.424 0.674 0.219 0.826 sum -2.771 -17.693 -6.834 19.168 Atomic orbital electron populations 1.69884 1.09264 1.30996 1.34262 1.26898 0.95497 1.04970 0.91069 0.85082 0.79466 0.75699 0.79014 1.17806 1.18693 1.19122 1.19998 0.98629 0.92370 1.40764 0.89945 1.18105 0.91642 0.93397 0.88785 1.21238 1.04866 0.92984 1.07498 1.20892 0.94567 0.97856 0.96104 1.18554 1.02565 0.92127 1.10506 1.28971 1.15586 1.04186 1.16250 1.05507 0.75679 0.72628 0.76519 1.93493 1.80395 1.82657 1.42243 1.93511 1.55584 1.62447 1.87913 1.55238 1.24004 1.22868 1.84656 1.22259 0.94359 0.83581 1.05595 1.23467 0.91827 0.90845 0.94170 0.82737 1.86600 1.36193 1.95806 1.18423 1.23146 0.90324 0.84359 0.84868 1.92979 1.83331 1.95772 1.47556 1.92989 1.74544 1.58283 1.93623 1.20961 0.98501 0.92630 0.99090 1.21343 1.00435 0.97281 1.02528 0.89771 0.87705 0.85282 0.82399 0.81741 0.73973 0.85573 0.89804 0.75971 0.81481 0.86753 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.01 10.95 21.82 0.24 -42.77 16 2 C 0.03 1.58 5.14 85.26 0.44 2.02 16 3 Si 0.99 37.48 29.60 68.60 2.03 39.51 16 4 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 5 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 6 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 7 C -0.49 -26.03 9.05 23.46 0.21 -25.82 16 8 H 0.08 4.19 7.91 -2.91 -0.02 4.16 16 9 C 0.08 4.50 5.57 -21.29 -0.12 4.39 16 10 C -0.25 -11.91 9.80 22.73 0.22 -11.68 16 11 C -0.07 -3.13 9.67 22.22 0.21 -2.92 16 12 C -0.23 -9.22 5.16 -19.67 -0.10 -9.32 16 13 C -0.52 -13.21 6.19 71.23 0.44 -12.77 16 14 S 2.60 77.06 5.44 -56.49 -0.31 76.75 16 15 O -1.00 -36.79 17.49 -127.65 -2.23 -39.02 16 16 O -1.00 -39.30 18.08 -127.65 -2.31 -41.61 16 17 N -1.11 -19.65 5.75 -187.48 -1.08 -20.73 16 18 C 0.07 0.75 5.71 86.38 0.49 1.24 16 19 C 0.06 0.57 3.25 30.59 0.10 0.67 16 20 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 21 O -0.56 -9.21 13.19 -148.98 -1.96 -11.17 16 22 C 0.23 1.96 4.99 71.98 0.36 2.32 16 23 F -0.21 -3.02 16.48 44.97 0.74 -2.28 16 24 F -0.21 -3.13 17.33 44.97 0.78 -2.35 16 25 C -0.09 -4.19 9.67 22.22 0.21 -3.97 16 26 C -0.20 -10.32 8.70 22.73 0.20 -10.12 16 27 H 0.29 13.73 8.30 -92.71 -0.77 12.97 16 28 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 29 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 30 H 0.16 3.03 8.08 -2.39 -0.02 3.01 16 31 H 0.16 2.74 8.08 -2.39 -0.02 2.72 16 32 H 0.42 6.72 8.62 -96.74 -0.83 5.88 16 33 H 0.13 0.28 8.14 -2.38 -0.02 0.26 16 34 H 0.08 1.14 7.49 -2.39 -0.02 1.12 16 35 H 0.39 5.37 8.55 -74.06 -0.63 4.74 16 36 H 0.17 -0.09 8.14 -2.38 -0.02 -0.11 16 37 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.11 5.76 6.16 -2.91 -0.02 5.74 16 Total: -1.00 -79.39 350.31 -1.77 -81.16 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -0.34 Total: 28.48 kcal Atomic # 6 Polarization: -68.64 SS G_CDS: 2.67 Total: -65.96 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -0.84 Total: -63.50 kcal Atomic # 8 Polarization: -85.30 SS G_CDS: -6.51 Total: -91.80 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 1.52 Total: -4.63 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Atomic # 16 Polarization: 77.06 SS G_CDS: -0.31 Total: 76.75 kcal Total: -79.39 -1.77 -81.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582357588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.619 kcal (2) G-P(sol) polarization free energy of solvation -79.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds