Wall clock time and date at job start Tue Mar 31 2020 18:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35672 * 116.99681 * 2 1 4 4 C 1.38922 * 119.68254 * 179.97438 * 3 2 1 5 5 C 1.38377 * 119.11067 * 179.97438 * 4 3 2 6 6 C 1.38834 * 118.48722 * 0.02562 * 5 4 3 7 7 S 1.76197 * 120.35574 * 179.97438 * 6 5 4 8 8 O 1.42096 * 106.40482 * 336.45411 * 7 6 5 9 9 O 1.42103 * 106.40227 * 203.53372 * 7 6 5 10 10 N 1.65598 * 107.22011 * 89.99593 * 7 6 5 11 11 C 1.39078 * 119.99857 * 64.99956 * 10 7 6 12 12 C 1.38754 * 119.65688 * 180.02562 * 11 10 7 13 13 C 1.40772 * 118.66636 * 179.70089 * 12 11 10 14 14 C 1.41557 * 120.98671 * 180.25461 * 13 12 11 15 15 H 1.08005 * 119.99964 * 156.15127 * 14 13 12 16 16 C 1.40027 * 120.00221 * 336.14596 * 14 13 12 17 17 N 1.30738 * 119.99790 * 343.17323 * 16 14 13 18 18 Si 1.86794 * 119.99777 * 163.17606 * 16 14 13 19 19 H 1.48500 * 109.47521 * 90.00186 * 18 16 14 20 20 H 1.48501 * 109.47144 * 209.99809 * 18 16 14 21 21 H 1.48502 * 109.47518 * 329.99984 * 18 16 14 22 22 C 1.41185 * 118.01740 * 0.27472 * 13 12 11 23 23 C 1.36554 * 119.14568 * 0.02562 * 22 13 12 24 24 N 1.32095 * 121.27034 * 0.02562 * 23 22 13 25 25 C 1.38042 * 119.28771 * 0.24450 * 6 5 4 26 26 N 1.31973 * 120.83382 * 359.46103 * 25 6 5 27 27 H 1.08993 * 109.47205 * 60.00602 * 1 2 3 28 28 H 1.09002 * 109.46579 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47195 * 299.99931 * 1 2 3 30 30 H 1.07996 * 120.44640 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.75870 * 179.97438 * 5 4 3 32 32 H 0.97001 * 120.00288 * 244.99555 * 10 7 6 33 33 H 1.07996 * 120.66516 * 359.97183 * 12 11 10 34 34 H 0.97005 * 120.00070 * 180.02562 * 17 16 14 35 35 H 1.08000 * 120.42397 * 180.02562 * 22 13 12 36 36 H 1.08000 * 119.36678 * 179.97438 * 23 22 13 37 37 H 1.08002 * 119.58403 * 179.72968 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0484 2.5132 0.0000 6 6 3.2504 3.6492 -0.0005 7 16 3.9826 5.2518 -0.0006 8 8 5.2858 5.0976 0.5445 9 8 3.0124 6.1363 0.5432 10 7 4.1871 5.6974 -1.5823 11 6 3.0780 5.8958 -2.3978 12 6 3.2576 6.2686 -3.7222 13 6 2.1207 6.4577 -4.5305 14 6 2.2471 6.8328 -5.8897 15 1 1.4537 6.6091 -6.5876 16 6 3.4005 7.4939 -6.3292 17 7 4.2026 8.0550 -5.4627 18 14 3.7930 7.5740 -8.1537 19 1 3.1734 8.7893 -8.7405 20 1 5.2651 7.6292 -8.3414 21 1 3.2527 6.3673 -8.8298 22 6 0.8508 6.2625 -3.9452 23 6 0.7729 5.9018 -2.6304 24 7 1.8605 5.7337 -1.8999 25 6 1.8770 3.5097 0.0046 26 7 1.3185 2.3140 -0.0006 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0229 0.3696 0.0005 31 1 5.1253 2.5948 0.0008 32 1 5.0803 5.8200 -1.9401 33 1 4.2497 6.4065 -4.1259 34 1 5.0015 8.5133 -5.7672 35 1 -0.0473 6.3967 -4.5298 36 1 -0.1967 5.7520 -2.1789 37 1 1.2516 4.3902 0.0087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584032363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:50 Heat of formation + Delta-G solvation = -41.445928 kcal Electronic energy + Delta-G solvation = -26287.066438 eV Core-core repulsion = 22349.902156 eV Total energy + Delta-G solvation = -3937.164282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65133 -38.78387 -38.01015 -36.84472 -35.47274 -34.80176 -33.87832 -32.62281 -31.00123 -30.66780 -28.34144 -27.48748 -26.15464 -23.85902 -23.26796 -22.11866 -21.53904 -19.26274 -18.60440 -18.16669 -17.46419 -17.22255 -16.96287 -16.19352 -16.06063 -15.33472 -14.75253 -14.68853 -14.35079 -14.25481 -14.20155 -13.78176 -13.55006 -13.18600 -13.06589 -13.03610 -12.70255 -12.09069 -11.94624 -11.73953 -11.61218 -11.54717 -11.42801 -11.29333 -11.06814 -10.95371 -10.56453 -10.39321 -10.15275 -10.10403 -9.69103 -9.50899 -8.89058 -8.29910 -8.15918 -7.29580 -6.97157 -4.75170 0.59820 0.90942 1.18078 2.61759 2.70533 2.87172 2.95277 2.98448 3.10695 3.24871 3.61763 3.75509 4.05391 4.27298 4.48478 4.58608 4.84817 5.01892 5.09764 5.17102 5.19392 5.21222 5.46176 5.51151 5.57751 5.72907 5.95176 6.14441 6.31953 6.59820 6.63783 6.84588 6.85684 7.00631 7.02247 7.30265 7.44902 7.69767 7.73305 7.98366 8.33718 8.58954 8.61133 9.26558 9.92881 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.003810 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.813976 B = 7346.442191 C = 8260.851942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.306 6.306 3 C 0.363 3.637 4 C -0.220 4.220 5 C 0.051 3.949 6 C -0.760 4.760 7 S 2.711 3.289 8 O -0.974 6.974 9 O -0.931 6.931 10 N -1.031 6.031 11 C 0.355 3.645 12 C -0.238 4.238 13 C 0.147 3.853 14 C -0.449 4.449 15 H 0.084 0.916 16 C 0.078 3.922 17 N -0.778 5.778 18 Si 0.912 3.088 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.283 4.283 23 C 0.137 3.863 24 N -0.612 5.612 25 C 0.276 3.724 26 N -0.556 5.556 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.427 0.573 33 H 0.130 0.870 34 H 0.285 0.715 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.571 -10.463 5.948 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.212 6.212 3 C 0.184 3.816 4 C -0.241 4.241 5 C 0.025 3.975 6 C -0.848 4.848 7 S 2.799 3.201 8 O -0.964 6.964 9 O -0.921 6.921 10 N -0.781 5.781 11 C 0.130 3.870 12 C -0.265 4.265 13 C 0.138 3.862 14 C -0.480 4.480 15 H 0.102 0.898 16 C -0.143 4.143 17 N -0.403 5.403 18 Si 0.736 3.264 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.307 4.307 23 C -0.015 4.015 24 N -0.335 5.335 25 C 0.118 3.882 26 N -0.280 5.280 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.165 0.835 31 H 0.172 0.828 32 H 0.263 0.737 33 H 0.147 0.853 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.146 0.854 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.158 -10.505 7.717 13.087 hybrid contribution 1.103 -0.043 -2.307 2.557 sum -0.055 -10.548 5.411 11.855 Atomic orbital electron populations 1.22942 0.76771 1.03043 1.03069 1.86246 1.23448 1.24725 1.86771 1.20186 0.89617 0.85011 0.86810 1.21036 0.92081 0.99566 1.11448 1.21140 1.00342 0.90187 0.85837 1.31688 1.06005 1.23297 1.23833 1.01496 0.72892 0.73508 0.72213 1.93560 1.39248 1.87273 1.76331 1.93587 1.61717 1.61058 1.75730 1.53042 1.13466 1.80837 1.30804 1.17620 0.84887 0.95990 0.88531 1.21572 1.00837 1.12294 0.91847 1.17627 0.90047 0.85637 0.92873 1.19647 1.02260 1.31986 0.94092 0.89771 1.26004 0.95027 0.92728 1.00553 1.69770 1.11052 1.22747 1.36726 0.86240 0.78432 0.79949 0.81787 1.19238 1.19890 1.18281 1.21561 0.97644 1.15177 0.96297 1.21198 0.94074 0.95238 0.90985 1.66536 0.97050 1.30550 1.39376 1.22590 0.91004 0.94192 0.80423 1.67567 1.40337 0.98792 1.21311 0.91753 0.88512 0.91952 0.83540 0.82791 0.73731 0.85263 0.90387 0.87753 0.85399 0.79216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.31 -3.93 10.48 -18.72 -0.20 -4.12 16 3 C 0.36 5.31 7.49 -17.12 -0.13 5.18 16 4 C -0.22 -2.89 10.04 -39.28 -0.39 -3.29 16 5 C 0.05 0.70 9.64 -39.31 -0.38 0.32 16 6 C -0.76 -12.30 5.79 -39.43 -0.23 -12.53 16 7 S 2.71 47.41 5.40 -107.50 -0.58 46.83 16 8 O -0.97 -17.25 17.36 -57.17 -0.99 -18.24 16 9 O -0.93 -19.00 16.15 -57.17 -0.92 -19.92 16 10 N -1.03 -18.82 5.85 31.09 0.18 -18.63 16 11 C 0.35 7.76 7.33 -154.97 -1.14 6.62 16 12 C -0.24 -5.66 8.63 -38.43 -0.33 -5.99 16 13 C 0.15 3.61 5.60 -106.56 -0.60 3.01 16 14 C -0.45 -10.91 9.12 -37.65 -0.34 -11.26 16 15 H 0.08 1.95 7.90 -52.48 -0.41 1.53 16 16 C 0.08 1.78 5.20 -17.35 -0.09 1.69 16 17 N -0.78 -18.42 10.92 55.55 0.61 -17.81 16 18 Si 0.91 17.11 29.59 -169.99 -5.03 12.08 16 19 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 21 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 22 C -0.28 -6.33 9.85 -39.07 -0.38 -6.72 16 23 C 0.14 2.87 11.10 -18.05 -0.20 2.67 16 24 N -0.61 -13.22 6.30 -12.82 -0.08 -13.30 16 25 C 0.28 4.64 9.60 -17.56 -0.17 4.47 16 26 N -0.56 -8.90 9.22 -13.33 -0.12 -9.03 16 27 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 31 H 0.15 1.72 7.71 -52.49 -0.40 1.32 16 32 H 0.43 6.68 8.82 -34.47 -0.30 6.37 16 33 H 0.13 3.10 6.20 -52.49 -0.33 2.77 16 34 H 0.28 6.10 8.29 -40.82 -0.34 5.76 16 35 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 37 H 0.19 3.29 6.58 -52.49 -0.35 2.94 16 LS Contribution 336.38 15.07 5.07 5.07 Total: -1.00 -30.25 336.38 -8.86 -39.11 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -3.46 Total: 12.36 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -3.33 Total: -14.39 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.58 Total: -58.77 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -2.11 Total: -42.29 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Atomic # 16 Polarization: 47.41 SS G_CDS: -0.58 Total: 46.83 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.25 -8.86 -39.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584032363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.336 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds