Wall clock time and date at job start Tue Mar 31 2020 18:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35672 * 116.99681 * 2 1 4 4 C 1.38922 * 119.68254 * 179.97438 * 3 2 1 5 5 C 1.38377 * 119.11067 * 179.97438 * 4 3 2 6 6 C 1.38834 * 118.48722 * 0.02562 * 5 4 3 7 7 S 1.76197 * 120.35574 * 179.97438 * 6 5 4 8 8 O 1.42096 * 106.40482 * 336.45411 * 7 6 5 9 9 O 1.42103 * 106.40227 * 203.53372 * 7 6 5 10 10 N 1.65598 * 107.22011 * 89.99593 * 7 6 5 11 11 C 1.39078 * 119.99857 * 64.99956 * 10 7 6 12 12 C 1.38754 * 119.65688 * 180.02562 * 11 10 7 13 13 C 1.40772 * 118.66636 * 179.70089 * 12 11 10 14 14 C 1.41557 * 120.98671 * 180.25461 * 13 12 11 15 15 H 1.08005 * 119.99964 * 156.15127 * 14 13 12 16 16 C 1.40027 * 120.00221 * 336.14596 * 14 13 12 17 17 N 1.30738 * 119.99790 * 343.17323 * 16 14 13 18 18 Si 1.86794 * 119.99777 * 163.17606 * 16 14 13 19 19 H 1.48500 * 109.47521 * 90.00186 * 18 16 14 20 20 H 1.48501 * 109.47144 * 209.99809 * 18 16 14 21 21 H 1.48502 * 109.47518 * 329.99984 * 18 16 14 22 22 C 1.41185 * 118.01740 * 0.27472 * 13 12 11 23 23 C 1.36554 * 119.14568 * 0.02562 * 22 13 12 24 24 N 1.32095 * 121.27034 * 0.02562 * 23 22 13 25 25 C 1.38042 * 119.28771 * 0.24450 * 6 5 4 26 26 N 1.31973 * 120.83382 * 359.46103 * 25 6 5 27 27 H 1.08993 * 109.47205 * 60.00602 * 1 2 3 28 28 H 1.09002 * 109.46579 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47195 * 299.99931 * 1 2 3 30 30 H 1.07996 * 120.44640 * 0.02562 * 4 3 2 31 31 H 1.08000 * 120.75870 * 179.97438 * 5 4 3 32 32 H 0.97001 * 120.00288 * 244.99555 * 10 7 6 33 33 H 1.07996 * 120.66516 * 359.97183 * 12 11 10 34 34 H 0.97005 * 120.00070 * 180.02562 * 17 16 14 35 35 H 1.08000 * 120.42397 * 180.02562 * 22 13 12 36 36 H 1.08000 * 119.36678 * 179.97438 * 23 22 13 37 37 H 1.08002 * 119.58403 * 179.72968 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0484 2.5132 0.0000 6 6 3.2504 3.6492 -0.0005 7 16 3.9826 5.2518 -0.0006 8 8 5.2858 5.0976 0.5445 9 8 3.0124 6.1363 0.5432 10 7 4.1871 5.6974 -1.5823 11 6 3.0780 5.8958 -2.3978 12 6 3.2576 6.2686 -3.7222 13 6 2.1207 6.4577 -4.5305 14 6 2.2471 6.8328 -5.8897 15 1 1.4537 6.6091 -6.5876 16 6 3.4005 7.4939 -6.3292 17 7 4.2026 8.0550 -5.4627 18 14 3.7930 7.5740 -8.1537 19 1 3.1734 8.7893 -8.7405 20 1 5.2651 7.6292 -8.3414 21 1 3.2527 6.3673 -8.8298 22 6 0.8508 6.2625 -3.9452 23 6 0.7729 5.9018 -2.6304 24 7 1.8605 5.7337 -1.8999 25 6 1.8770 3.5097 0.0046 26 7 1.3185 2.3140 -0.0006 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.0229 0.3696 0.0005 31 1 5.1253 2.5948 0.0008 32 1 5.0803 5.8200 -1.9401 33 1 4.2497 6.4065 -4.1259 34 1 5.0015 8.5133 -5.7672 35 1 -0.0473 6.3967 -4.5298 36 1 -0.1967 5.7520 -2.1789 37 1 1.2516 4.3902 0.0087 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584032363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:49 Heat of formation + Delta-G solvation = -63.190885 kcal Electronic energy + Delta-G solvation = -26288.009370 eV Core-core repulsion = 22349.902156 eV Total energy + Delta-G solvation = -3938.107214 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75138 -40.48253 -39.04902 -38.31265 -36.96563 -36.45989 -35.54794 -33.76046 -32.51021 -32.03996 -30.02675 -28.38361 -27.92426 -25.03190 -24.37647 -23.81950 -23.22521 -20.74279 -19.78991 -19.57132 -18.92803 -18.58825 -18.22483 -17.72635 -17.15884 -16.97417 -16.14129 -16.13020 -15.86779 -15.67794 -15.33824 -15.02054 -14.82997 -14.68682 -14.54132 -14.37477 -14.19076 -13.45864 -13.27495 -13.21213 -13.05819 -12.90353 -12.89527 -12.67276 -12.45716 -12.33323 -12.07280 -11.94311 -11.88998 -11.25131 -11.19751 -10.87769 -10.10530 -9.98642 -9.87720 -8.99428 -8.68429 -6.57081 -0.73799 -0.34774 0.06212 0.91342 0.98885 1.41646 1.52144 1.58082 1.80973 1.92362 2.19155 2.39419 2.66556 2.78865 3.14073 3.29257 3.60415 3.73492 3.83207 3.91190 4.01160 4.37606 4.38851 4.49607 4.54350 4.63886 4.72589 4.79192 4.89602 4.93728 5.11233 5.18099 5.21546 5.30033 5.55299 5.88739 5.95748 5.95921 6.22679 6.53238 6.56509 6.81026 6.82485 7.54535 8.23962 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.003810 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.813976 B = 7346.442191 C = 8260.851942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.306 6.306 3 C 0.352 3.648 4 C -0.212 4.212 5 C 0.049 3.951 6 C -0.768 4.768 7 S 2.728 3.272 8 O -0.975 6.975 9 O -0.963 6.963 10 N -1.027 6.027 11 C 0.358 3.642 12 C -0.262 4.262 13 C 0.118 3.882 14 C -0.481 4.481 15 H 0.086 0.914 16 C 0.041 3.959 17 N -0.807 5.807 18 Si 0.984 3.016 19 H -0.263 1.263 20 H -0.266 1.266 21 H -0.258 1.258 22 C -0.297 4.297 23 C 0.135 3.865 24 N -0.611 5.611 25 C 0.262 3.738 26 N -0.567 5.567 27 H 0.055 0.945 28 H 0.132 0.868 29 H 0.061 0.939 30 H 0.182 0.818 31 H 0.182 0.818 32 H 0.436 0.564 33 H 0.121 0.879 34 H 0.293 0.707 35 H 0.117 0.883 36 H 0.162 0.838 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 -12.134 5.772 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.173 3.827 4 C -0.232 4.232 5 C 0.023 3.977 6 C -0.859 4.859 7 S 2.819 3.181 8 O -0.965 6.965 9 O -0.953 6.953 10 N -0.777 5.777 11 C 0.131 3.869 12 C -0.289 4.289 13 C 0.110 3.890 14 C -0.511 4.511 15 H 0.104 0.896 16 C -0.177 4.177 17 N -0.432 5.432 18 Si 0.804 3.196 19 H -0.188 1.188 20 H -0.190 1.190 21 H -0.182 1.182 22 C -0.321 4.321 23 C -0.016 4.016 24 N -0.334 5.334 25 C 0.104 3.896 26 N -0.292 5.292 27 H 0.074 0.926 28 H 0.150 0.850 29 H 0.080 0.920 30 H 0.199 0.801 31 H 0.199 0.801 32 H 0.274 0.726 33 H 0.139 0.861 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.179 0.821 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.710 -12.158 7.553 14.331 hybrid contribution 0.902 0.352 -2.135 2.344 sum 0.192 -11.807 5.418 12.992 Atomic orbital electron populations 1.23195 0.75295 1.05235 1.02600 1.86263 1.24906 1.23641 1.86327 1.20563 0.90520 0.85146 0.86470 1.21440 0.91763 1.00553 1.09494 1.21532 1.01582 0.89634 0.84957 1.31383 1.06005 1.22915 1.25611 1.00794 0.72351 0.73596 0.71404 1.93551 1.39332 1.87502 1.76119 1.93545 1.62607 1.62899 1.76264 1.53000 1.13204 1.80856 1.30688 1.17738 0.85802 0.94897 0.88420 1.21566 1.00410 1.14057 0.92900 1.18030 0.91166 0.86212 0.93597 1.19928 1.03497 1.33310 0.94405 0.89634 1.26805 0.94321 0.91752 1.04861 1.69811 1.11576 1.23094 1.38758 0.85167 0.78438 0.79854 0.76101 1.18752 1.19020 1.18160 1.21770 0.97488 1.15717 0.97121 1.21745 0.95327 0.93874 0.90683 1.66726 0.97111 1.30294 1.39263 1.22455 0.91251 0.94371 0.81556 1.67520 1.40902 0.98940 1.21835 0.92625 0.85037 0.92015 0.80107 0.80081 0.72624 0.86138 0.89601 0.86539 0.82116 0.80386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.38 113.37 1.18 1.73 16 2 O -0.31 -7.15 10.48 -89.89 -0.94 -8.09 16 3 C 0.35 9.64 7.49 84.79 0.63 10.28 16 4 C -0.21 -4.97 10.04 22.47 0.23 -4.74 16 5 C 0.05 1.23 9.64 22.45 0.22 1.45 16 6 C -0.77 -24.13 5.79 22.37 0.13 -24.00 16 7 S 2.73 94.29 5.40 -56.49 -0.30 93.99 16 8 O -0.97 -33.40 17.36 -128.00 -2.22 -35.62 16 9 O -0.96 -39.56 16.15 -128.00 -2.07 -41.63 16 10 N -1.03 -37.53 5.85 -55.55 -0.32 -37.86 16 11 C 0.36 15.83 7.33 132.91 0.97 16.80 16 12 C -0.26 -12.76 8.63 23.01 0.20 -12.56 16 13 C 0.12 5.96 5.60 -21.12 -0.12 5.84 16 14 C -0.48 -23.83 9.12 23.52 0.21 -23.62 16 15 H 0.09 4.04 7.90 -2.91 -0.02 4.02 16 16 C 0.04 1.88 5.20 85.29 0.44 2.32 16 17 N -0.81 -38.74 10.92 21.84 0.24 -38.51 16 18 Si 0.98 34.87 29.59 68.60 2.03 36.90 16 19 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 20 H -0.27 -8.98 7.11 99.48 0.71 -8.27 16 21 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 22 C -0.30 -13.45 9.85 22.60 0.22 -13.23 16 23 C 0.14 5.65 11.10 84.26 0.94 6.59 16 24 N -0.61 -26.46 6.30 -194.47 -1.23 -27.68 16 25 C 0.26 8.73 9.60 84.62 0.81 9.54 16 26 N -0.57 -17.68 9.22 -308.95 -2.85 -20.53 16 27 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 28 H 0.13 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 30 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 31 H 0.18 3.50 7.71 -2.91 -0.02 3.48 16 32 H 0.44 13.70 8.82 -96.74 -0.85 12.84 16 33 H 0.12 5.97 6.20 -2.91 -0.02 5.95 16 34 H 0.29 12.62 8.29 -92.70 -0.77 11.85 16 35 H 0.12 4.83 8.06 -2.91 -0.02 4.80 16 36 H 0.16 5.50 8.06 -2.91 -0.02 5.48 16 37 H 0.18 6.25 6.58 -2.91 -0.02 6.23 16 Total: -1.00 -65.12 336.38 -1.31 -66.43 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.29 Total: 36.19 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 6.07 Total: -23.60 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -4.16 Total: -124.58 kcal Atomic # 8 Polarization: -80.11 SS G_CDS: -5.23 Total: -85.34 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Atomic # 16 Polarization: 94.29 SS G_CDS: -0.30 Total: 93.99 kcal Total: -65.12 -1.31 -66.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584032363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.242 kcal (2) G-P(sol) polarization free energy of solvation -65.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds