Wall clock time and date at job start Tue Mar 31 2020 18:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35546 * 116.99604 * 2 1 4 4 C 1.38929 * 120.46222 * 179.97438 * 3 2 1 5 5 C 1.39236 * 118.28644 * 180.02562 * 4 3 2 6 6 N 1.38603 * 120.49709 * 179.97438 * 5 4 3 7 7 S 1.65606 * 120.00161 * 180.02562 * 6 5 4 8 8 O 1.42095 * 106.39828 * 311.45971 * 7 6 5 9 9 O 1.42099 * 106.40039 * 178.54360 * 7 6 5 10 10 C 1.76196 * 107.21539 * 65.00371 * 7 6 5 11 11 C 1.38661 * 119.87204 * 269.97491 * 10 7 6 12 12 C 1.38615 * 120.49695 * 180.02562 * 11 10 7 13 13 C 1.37638 * 120.25222 * 359.97438 * 12 11 10 14 14 C 1.40700 * 119.74069 * 0.02562 * 13 12 11 15 15 C 1.41398 * 120.24232 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99853 * 335.57949 * 15 14 13 17 17 C 1.39945 * 119.99944 * 155.57438 * 15 14 13 18 18 N 1.30826 * 120.00259 * 341.92569 * 17 15 14 19 19 Si 1.86806 * 119.99911 * 161.92338 * 17 15 14 20 20 H 1.48501 * 109.46904 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47094 * 120.00303 * 19 17 15 22 22 H 1.48500 * 109.46961 * 240.00232 * 19 17 15 23 23 C 1.37599 * 119.87557 * 90.00268 * 10 7 6 24 24 N 1.33150 * 119.00631 * 0.27718 * 5 4 3 25 25 C 1.31722 * 120.83522 * 359.43864 * 24 5 4 26 26 N 1.31776 * 121.89319 * 0.57410 * 25 24 5 27 27 H 1.08994 * 109.47054 * 300.00091 * 1 2 3 28 28 H 1.09003 * 109.46934 * 60.00193 * 1 2 3 29 29 H 1.08994 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.85486 * 359.97438 * 4 3 2 31 31 H 0.97007 * 119.99798 * 0.02562 * 6 5 4 32 32 H 1.07994 * 119.74800 * 0.02562 * 11 10 7 33 33 H 1.08001 * 119.87119 * 179.97438 * 12 11 10 34 34 H 1.07999 * 120.13151 * 180.02562 * 13 12 11 35 35 H 0.96997 * 120.00151 * 180.02562 * 18 17 15 36 36 H 1.07990 * 120.12801 * 0.25159 * 23 10 7 37 37 H 1.07998 * 119.05791 * 180.27062 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 3.4311 1.2918 0.0005 5 6 4.0156 2.5555 0.0011 6 7 5.3948 2.6926 0.0021 7 16 6.0770 4.2016 0.0034 8 8 5.4205 4.9395 -1.0183 9 8 7.4840 4.0059 0.0390 10 6 5.6426 4.9690 1.5288 11 6 4.4800 5.7194 1.6180 12 6 4.1261 6.3291 2.8115 13 6 4.9269 6.1950 3.9229 14 6 6.1090 5.4360 3.8439 15 6 6.9393 5.2908 4.9792 16 1 6.9161 6.0329 5.7635 17 6 7.7909 4.1855 5.0865 18 7 7.5829 3.1254 4.3487 19 14 9.2247 4.2239 6.2833 20 1 9.2409 5.5274 6.9947 21 1 9.0757 3.1239 7.2697 22 1 10.4970 4.0508 5.5372 23 6 6.4587 4.8219 2.6269 24 7 3.2297 3.6303 0.0067 25 6 1.9182 3.5078 0.0006 26 7 1.3290 2.3291 0.0000 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 4.0400 0.3998 0.0014 31 1 5.9605 1.9046 0.0022 32 1 3.8455 5.8295 0.7511 33 1 3.2184 6.9116 2.8695 34 1 4.6491 6.6706 4.8519 35 1 8.1730 2.3591 4.4234 36 1 7.3660 4.2408 2.5540 37 1 1.3081 4.3990 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585722718.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:05 Heat of formation + Delta-G solvation = -35.650136 kcal Electronic energy + Delta-G solvation = -26462.667919 eV Core-core repulsion = 22525.754961 eV Total energy + Delta-G solvation = -3936.912958 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19740 -38.70298 -37.61110 -36.68160 -35.80507 -35.32997 -33.80029 -32.29529 -30.90261 -30.23945 -29.57773 -27.49321 -25.44817 -24.51451 -23.36376 -21.81259 -21.13925 -19.69856 -19.14765 -18.11112 -17.46673 -17.05677 -16.32671 -16.22747 -15.97045 -15.46325 -15.11205 -14.84640 -14.72623 -14.64776 -14.39105 -14.10825 -13.44162 -13.29065 -12.67728 -12.36310 -12.22139 -12.01496 -11.84037 -11.59801 -11.52608 -11.46988 -11.37533 -11.18160 -11.10575 -10.81500 -10.73140 -10.56524 -9.87604 -9.60496 -9.42394 -9.35085 -9.31675 -8.88332 -8.10683 -7.58972 -6.93192 -4.50205 0.82043 1.03248 1.24159 2.18178 2.70977 2.75691 3.02381 3.07268 3.09576 3.17679 3.79651 3.84813 4.06123 4.08219 4.22355 4.50037 4.81624 4.99988 5.02761 5.12086 5.13946 5.30841 5.41498 5.46296 5.62868 6.06468 6.16700 6.42319 6.49453 6.55450 6.85513 6.88571 6.97296 7.08673 7.13515 7.23143 7.49884 7.69517 7.79259 8.02153 8.10551 8.35205 8.69321 8.73320 10.04704 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.003986 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.517117 B = 7022.723094 C = 7386.550169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.302 6.302 3 C 0.383 3.617 4 C -0.282 4.282 5 C 0.463 3.537 6 N -1.024 6.024 7 S 2.679 3.321 8 O -0.944 6.944 9 O -0.959 6.959 10 C -0.635 4.635 11 C -0.125 4.125 12 C -0.117 4.117 13 C -0.178 4.178 14 C 0.087 3.913 15 C -0.462 4.462 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.798 5.798 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.269 1.269 23 C -0.061 4.061 24 N -0.561 5.561 25 C 0.380 3.620 26 N -0.600 5.600 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.153 0.847 31 H 0.435 0.565 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.284 0.716 36 H 0.135 0.865 37 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.316 -6.259 -6.754 13.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.198 3.802 4 C -0.311 4.311 5 C 0.224 3.776 6 N -0.767 5.767 7 S 2.777 3.223 8 O -0.934 6.934 9 O -0.950 6.950 10 C -0.729 4.729 11 C -0.146 4.146 12 C -0.136 4.136 13 C -0.198 4.198 14 C 0.083 3.917 15 C -0.491 4.491 16 H 0.100 0.900 17 C -0.143 4.143 18 N -0.423 5.423 19 Si 0.735 3.265 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.194 1.194 23 C -0.082 4.082 24 N -0.286 5.286 25 C 0.091 3.909 26 N -0.333 5.333 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.171 0.829 31 H 0.271 0.729 32 H 0.140 0.860 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.126 -5.574 -7.521 13.074 hybrid contribution 0.858 -1.149 1.400 2.004 sum -8.268 -6.723 -6.121 12.289 Atomic orbital electron populations 1.22934 0.76673 1.03113 1.02891 1.86222 1.23361 1.24134 1.86945 1.19666 0.88739 0.84938 0.86884 1.21114 0.93307 0.98618 1.18031 1.17728 0.84561 0.89242 0.86115 1.53873 1.10017 1.29545 1.83299 1.02230 0.72556 0.71952 0.75576 1.93540 1.75743 1.68353 1.55768 1.93588 1.28595 1.84641 1.88140 1.29541 1.07817 1.17319 1.18194 1.20239 0.96085 1.00296 0.98029 1.20670 0.98781 1.00456 0.93698 1.21273 0.95777 1.05527 0.97236 1.17646 0.90813 0.90696 0.92511 1.19599 1.18507 1.06558 1.04461 0.89991 1.25930 0.97899 0.94256 0.96227 1.69733 1.34271 1.03199 1.35126 0.86216 0.80726 0.79478 0.80113 1.18306 1.19907 1.19397 1.21233 0.97631 0.98995 0.90348 1.68085 1.07287 1.31012 1.22240 1.24425 0.86605 0.93890 0.85952 1.68135 1.41323 0.98987 1.24871 0.91863 0.91973 0.88483 0.82933 0.72874 0.86009 0.88460 0.88369 0.90498 0.84705 0.77681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.41 101.05 1.05 1.38 16 2 O -0.30 -3.63 10.49 -18.33 -0.19 -3.82 16 3 C 0.38 5.25 7.52 -16.79 -0.13 5.13 16 4 C -0.28 -3.92 9.98 -38.95 -0.39 -4.31 16 5 C 0.46 7.47 7.35 -154.73 -1.14 6.33 16 6 N -1.02 -16.49 5.84 31.20 0.18 -16.30 16 7 S 2.68 53.50 5.39 -107.50 -0.58 52.92 16 8 O -0.94 -19.89 16.17 -57.17 -0.92 -20.81 16 9 O -0.96 -21.05 17.26 -57.17 -0.99 -22.04 16 10 C -0.63 -14.43 5.77 -39.66 -0.23 -14.66 16 11 C -0.13 -2.70 8.42 -39.29 -0.33 -3.03 16 12 C -0.12 -2.49 10.02 -39.66 -0.40 -2.89 16 13 C -0.18 -4.16 9.80 -38.87 -0.38 -4.55 16 14 C 0.09 2.24 5.57 -106.82 -0.60 1.65 16 15 C -0.46 -11.85 9.05 -37.74 -0.34 -12.20 16 16 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.82 5.13 -17.34 -0.09 1.73 16 18 N -0.80 -19.93 10.97 55.55 0.61 -19.33 16 19 Si 0.91 18.27 29.60 -169.99 -5.03 13.24 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 C -0.06 -1.54 8.16 -38.87 -0.32 -1.86 16 24 N -0.56 -9.33 6.46 -13.87 -0.09 -9.42 16 25 C 0.38 5.24 12.28 -92.23 -1.13 4.11 16 26 N -0.60 -8.14 9.38 -14.72 -0.14 -8.27 16 27 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 28 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.43 5.49 8.84 -34.48 -0.30 5.19 16 32 H 0.12 2.42 6.54 -52.49 -0.34 2.08 16 33 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 36 H 0.14 3.56 5.72 -52.49 -0.30 3.26 16 37 H 0.21 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 336.27 15.07 5.07 5.07 Total: -1.00 -32.11 336.27 -9.95 -42.06 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -3.45 Total: 9.86 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -4.41 Total: -23.16 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.56 Total: -53.32 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -2.10 Total: -46.67 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: 53.50 SS G_CDS: -0.58 Total: 52.92 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.11 -9.95 -42.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585722718.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.413 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds