Wall clock time and date at job start Tue Mar 31 2020 18:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35546 * 116.99604 * 2 1 4 4 C 1.38929 * 120.46222 * 179.97438 * 3 2 1 5 5 C 1.39236 * 118.28644 * 180.02562 * 4 3 2 6 6 N 1.38603 * 120.49709 * 179.97438 * 5 4 3 7 7 S 1.65606 * 120.00161 * 180.02562 * 6 5 4 8 8 O 1.42095 * 106.39828 * 311.45971 * 7 6 5 9 9 O 1.42099 * 106.40039 * 178.54360 * 7 6 5 10 10 C 1.76196 * 107.21539 * 65.00371 * 7 6 5 11 11 C 1.38661 * 119.87204 * 269.97491 * 10 7 6 12 12 C 1.38615 * 120.49695 * 180.02562 * 11 10 7 13 13 C 1.37638 * 120.25222 * 359.97438 * 12 11 10 14 14 C 1.40700 * 119.74069 * 0.02562 * 13 12 11 15 15 C 1.41398 * 120.24232 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99853 * 335.57949 * 15 14 13 17 17 C 1.39945 * 119.99944 * 155.57438 * 15 14 13 18 18 N 1.30826 * 120.00259 * 341.92569 * 17 15 14 19 19 Si 1.86806 * 119.99911 * 161.92338 * 17 15 14 20 20 H 1.48501 * 109.46904 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47094 * 120.00303 * 19 17 15 22 22 H 1.48500 * 109.46961 * 240.00232 * 19 17 15 23 23 C 1.37599 * 119.87557 * 90.00268 * 10 7 6 24 24 N 1.33150 * 119.00631 * 0.27718 * 5 4 3 25 25 C 1.31722 * 120.83522 * 359.43864 * 24 5 4 26 26 N 1.31776 * 121.89319 * 0.57410 * 25 24 5 27 27 H 1.08994 * 109.47054 * 300.00091 * 1 2 3 28 28 H 1.09003 * 109.46934 * 60.00193 * 1 2 3 29 29 H 1.08994 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.85486 * 359.97438 * 4 3 2 31 31 H 0.97007 * 119.99798 * 0.02562 * 6 5 4 32 32 H 1.07994 * 119.74800 * 0.02562 * 11 10 7 33 33 H 1.08001 * 119.87119 * 179.97438 * 12 11 10 34 34 H 1.07999 * 120.13151 * 180.02562 * 13 12 11 35 35 H 0.96997 * 120.00151 * 180.02562 * 18 17 15 36 36 H 1.07990 * 120.12801 * 0.25159 * 23 10 7 37 37 H 1.07998 * 119.05791 * 180.27062 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 3.4311 1.2918 0.0005 5 6 4.0156 2.5555 0.0011 6 7 5.3948 2.6926 0.0021 7 16 6.0770 4.2016 0.0034 8 8 5.4205 4.9395 -1.0183 9 8 7.4840 4.0059 0.0390 10 6 5.6426 4.9690 1.5288 11 6 4.4800 5.7194 1.6180 12 6 4.1261 6.3291 2.8115 13 6 4.9269 6.1950 3.9229 14 6 6.1090 5.4360 3.8439 15 6 6.9393 5.2908 4.9792 16 1 6.9161 6.0329 5.7635 17 6 7.7909 4.1855 5.0865 18 7 7.5829 3.1254 4.3487 19 14 9.2247 4.2239 6.2833 20 1 9.2409 5.5274 6.9947 21 1 9.0757 3.1239 7.2697 22 1 10.4970 4.0508 5.5372 23 6 6.4587 4.8219 2.6269 24 7 3.2297 3.6303 0.0067 25 6 1.9182 3.5078 0.0006 26 7 1.3290 2.3291 0.0000 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 4.0400 0.3998 0.0014 31 1 5.9605 1.9046 0.0022 32 1 3.8455 5.8295 0.7511 33 1 3.2184 6.9116 2.8695 34 1 4.6491 6.6706 4.8519 35 1 8.1730 2.3591 4.4234 36 1 7.3660 4.2408 2.5540 37 1 1.3081 4.3990 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585722718.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:04 Heat of formation + Delta-G solvation = -57.762575 kcal Electronic energy + Delta-G solvation = -26463.626787 eV Core-core repulsion = 22525.754961 eV Total energy + Delta-G solvation = -3937.871825 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.27269 -39.68937 -39.39027 -38.33335 -37.06193 -36.95562 -35.60851 -33.40473 -32.05085 -31.99919 -31.36974 -28.28522 -27.29041 -25.59621 -24.47419 -23.56053 -22.93412 -21.06362 -20.25371 -19.77499 -19.00507 -18.29863 -17.89449 -17.32822 -17.20147 -16.77464 -16.61882 -16.41208 -16.25974 -15.77935 -15.55324 -15.21963 -15.06140 -14.98531 -14.38208 -13.70773 -13.52715 -13.46701 -13.28604 -13.15403 -13.08670 -12.92102 -12.86158 -12.83432 -12.58534 -12.44811 -12.21125 -11.80814 -11.60679 -11.21934 -11.13482 -10.58311 -10.55137 -10.02160 -9.88119 -9.41791 -8.72958 -6.40259 -0.73572 -0.05509 0.10979 0.40531 0.95872 1.37312 1.46622 1.52121 1.60634 2.00430 2.18024 2.48513 2.61394 2.78713 2.95117 3.10525 3.40820 3.56421 3.87387 3.95787 4.26889 4.41657 4.46258 4.46746 4.61384 4.67280 4.75874 4.78367 5.02945 5.10413 5.15148 5.26270 5.40257 5.45164 5.68828 5.88531 5.92220 5.96390 6.10056 6.22786 6.48965 6.84155 6.88701 7.01474 8.27457 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.003986 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.517117 B = 7022.723094 C = 7386.550169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.307 6.307 3 C 0.378 3.622 4 C -0.280 4.280 5 C 0.440 3.560 6 N -1.016 6.016 7 S 2.710 3.290 8 O -0.954 6.954 9 O -0.984 6.984 10 C -0.646 4.646 11 C -0.119 4.119 12 C -0.115 4.115 13 C -0.188 4.188 14 C 0.055 3.945 15 C -0.498 4.498 16 H 0.081 0.919 17 C 0.034 3.966 18 N -0.827 5.827 19 Si 0.979 3.021 20 H -0.256 1.256 21 H -0.263 1.263 22 H -0.266 1.266 23 C -0.091 4.091 24 N -0.590 5.590 25 C 0.376 3.624 26 N -0.596 5.596 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.175 0.825 31 H 0.448 0.552 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.110 0.890 35 H 0.291 0.709 36 H 0.115 0.885 37 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.820 -6.837 -6.994 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.211 6.211 3 C 0.192 3.808 4 C -0.308 4.308 5 C 0.202 3.798 6 N -0.764 5.764 7 S 2.806 3.194 8 O -0.944 6.944 9 O -0.974 6.974 10 C -0.737 4.737 11 C -0.140 4.140 12 C -0.134 4.134 13 C -0.208 4.208 14 C 0.052 3.948 15 C -0.528 4.528 16 H 0.099 0.901 17 C -0.181 4.181 18 N -0.453 5.453 19 Si 0.800 3.200 20 H -0.180 1.180 21 H -0.188 1.188 22 H -0.191 1.191 23 C -0.112 4.112 24 N -0.317 5.317 25 C 0.088 3.912 26 N -0.329 5.329 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.145 0.855 30 H 0.193 0.807 31 H 0.288 0.712 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.128 0.872 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -10.662 -6.153 -7.747 14.545 hybrid contribution 1.082 -1.029 1.355 2.017 sum -9.580 -7.182 -6.391 13.572 Atomic orbital electron populations 1.23226 0.74758 1.05217 1.02947 1.86230 1.25218 1.23157 1.86462 1.19876 0.88942 0.85585 0.86374 1.21296 0.93861 0.98548 1.17083 1.17932 0.84161 0.90247 0.87504 1.53386 1.10681 1.28768 1.83598 1.01237 0.71719 0.72237 0.74254 1.93517 1.75852 1.69545 1.55474 1.93550 1.30423 1.85320 1.88133 1.29947 1.07633 1.17372 1.18763 1.20609 0.95576 0.98934 0.98832 1.21093 0.99615 0.99963 0.92769 1.21549 0.95441 1.05159 0.98624 1.18028 0.92026 0.91813 0.92974 1.19845 1.20403 1.07533 1.04995 0.90078 1.26746 0.99893 0.93493 0.97929 1.69781 1.35290 1.03801 1.36460 0.85193 0.77141 0.79703 0.77966 1.17990 1.18782 1.19121 1.21074 0.98049 1.00696 0.91403 1.68046 1.08527 1.31711 1.23416 1.25113 0.86067 0.95047 0.84974 1.68222 1.41140 0.98995 1.24517 0.92084 0.91577 0.85464 0.80740 0.71208 0.83995 0.84556 0.87167 0.89830 0.86694 0.74507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.41 113.37 1.18 1.66 16 2 O -0.31 -6.67 10.49 -88.51 -0.93 -7.60 16 3 C 0.38 9.64 7.52 84.68 0.64 10.28 16 4 C -0.28 -7.32 9.98 22.68 0.23 -7.10 16 5 C 0.44 13.70 7.35 133.00 0.98 14.68 16 6 N -1.02 -32.30 5.84 -55.21 -0.32 -32.62 16 7 S 2.71 108.33 5.39 -56.49 -0.30 108.02 16 8 O -0.95 -39.53 16.17 -128.00 -2.07 -41.60 16 9 O -0.98 -43.99 17.26 -128.00 -2.21 -46.20 16 10 C -0.65 -29.54 5.77 22.22 0.13 -29.41 16 11 C -0.12 -4.99 8.42 22.46 0.19 -4.80 16 12 C -0.12 -4.75 10.02 22.22 0.22 -4.53 16 13 C -0.19 -8.78 9.80 22.73 0.22 -8.56 16 14 C 0.05 2.90 5.57 -21.29 -0.12 2.79 16 15 C -0.50 -26.38 9.05 23.46 0.21 -26.17 16 16 H 0.08 4.11 7.91 -2.91 -0.02 4.08 16 17 C 0.03 1.71 5.13 85.26 0.44 2.14 16 18 N -0.83 -42.52 10.97 21.83 0.24 -42.28 16 19 Si 0.98 37.94 29.60 68.60 2.03 39.97 16 20 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 23 C -0.09 -4.76 8.16 22.73 0.19 -4.57 16 24 N -0.59 -18.74 6.46 -197.80 -1.28 -20.02 16 25 C 0.38 9.57 12.28 180.91 2.22 11.79 16 26 N -0.60 -14.89 9.38 -313.04 -2.94 -17.82 16 27 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 28 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 29 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.18 3.60 8.06 -2.91 -0.02 3.58 16 31 H 0.45 11.19 8.84 -96.73 -0.86 10.33 16 32 H 0.14 5.35 6.54 -2.91 -0.02 5.33 16 33 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 36 H 0.12 6.37 5.72 -2.92 -0.02 6.35 16 37 H 0.24 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -70.02 336.27 -0.77 -70.79 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.29 Total: 31.15 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 6.72 Total: -41.79 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.30 Total: -112.75 kcal Atomic # 8 Polarization: -90.19 SS G_CDS: -5.21 Total: -95.40 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Atomic # 16 Polarization: 108.33 SS G_CDS: -0.30 Total: 108.02 kcal Total: -70.02 -0.77 -70.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585722718.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.028 kcal (2) G-P(sol) polarization free energy of solvation -70.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds