Wall clock time and date at job start Tue Mar 31 2020 18:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86793 * 120.00180 * 2 1 4 4 H 1.48503 * 109.47174 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47185 * 299.99437 * 3 2 1 6 6 H 1.48494 * 109.47223 * 59.99646 * 3 2 1 7 7 C 1.39953 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99647 * 162.22017 * 7 2 1 9 9 C 1.41395 * 119.99846 * 342.21744 * 7 2 1 10 10 C 1.40735 * 120.24505 * 335.28165 * 9 7 2 11 11 C 1.37596 * 119.74376 * 180.02562 * 10 9 7 12 12 C 1.38668 * 120.24728 * 359.72698 * 11 10 9 13 13 C 1.38605 * 120.49767 * 0.54789 * 12 11 10 14 14 S 1.76202 * 119.87342 * 179.72435 * 13 12 11 15 15 O 1.42099 * 106.40458 * 156.19206 * 14 13 12 16 16 O 1.42095 * 106.40229 * 23.26813 * 14 13 12 17 17 N 1.65602 * 107.21843 * 269.72933 * 14 13 12 18 18 C 1.38256 * 120.00098 * 65.00031 * 17 14 13 19 19 N 1.31075 * 126.36916 * 0.03867 * 18 17 14 20 20 N 1.28659 * 109.31460 * 179.69748 * 19 18 17 21 21 C 1.30068 * 109.54512 * 0.44713 * 20 19 18 22 22 C 1.50700 * 126.21254 * 179.82553 * 21 20 19 23 23 C 1.52999 * 117.49934 * 59.68824 * 22 21 20 24 24 C 1.53004 * 60.03284 * 252.52193 * 23 22 21 25 25 O 1.34585 * 126.37462 * 179.97438 * 18 17 14 26 26 C 1.37641 * 120.25283 * 359.45348 * 13 12 11 27 27 H 0.97003 * 119.99945 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.12761 * 0.02562 * 10 9 7 29 29 H 1.07994 * 119.88065 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.74538 * 180.29566 * 12 11 10 31 31 H 0.96997 * 120.00150 * 244.99846 * 17 14 13 32 32 H 1.08994 * 115.55993 * 205.38242 * 22 21 20 33 33 H 1.09000 * 117.49739 * 145.02310 * 23 22 21 34 34 H 1.08999 * 117.49786 * 0.02562 * 23 22 21 35 35 H 1.09001 * 117.49715 * 107.48138 * 24 23 22 36 36 H 1.08999 * 117.49896 * 252.47257 * 24 23 22 37 37 H 1.07998 * 120.12975 * 180.25139 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3964 1.2124 7 6 2.0079 -1.2121 0.0005 8 1 3.0492 -1.2345 -0.2851 9 6 1.3515 -2.4071 0.3751 10 6 0.2234 -2.3629 1.2153 11 6 -0.4071 -3.5322 1.5737 12 6 0.0617 -4.7504 1.1057 13 6 1.1752 -4.8062 0.2823 14 16 1.7612 -6.3637 -0.2971 15 8 2.4871 -6.1009 -1.4900 16 8 0.6557 -7.2547 -0.2402 17 7 2.8634 -6.9150 0.8091 18 6 2.4567 -7.2301 2.0923 19 7 1.2374 -7.1410 2.5651 20 7 1.2286 -7.5225 3.7938 21 6 2.4325 -7.8582 4.1539 22 6 2.8487 -8.3557 5.5142 23 6 2.1911 -9.6374 6.0294 24 6 1.8133 -8.2861 6.6394 25 8 3.2387 -7.6864 3.0881 26 6 1.8218 -3.6492 -0.0891 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1460 -1.4149 1.5773 29 1 -1.2733 -3.5008 2.2180 30 1 -0.4423 -5.6628 1.3882 31 1 3.7944 -7.0170 0.5566 32 1 3.8920 -8.1839 5.7787 33 1 2.8018 -10.3089 6.6329 34 1 1.4576 -10.1211 5.3842 35 1 0.8313 -7.8807 6.3954 36 1 2.1750 -8.0689 7.6444 37 1 2.6868 -3.6947 -0.7341 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589591233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:32 Heat of formation + Delta-G solvation = 24.032292 kcal Electronic energy + Delta-G solvation = -26047.172386 eV Core-core repulsion = 22112.847452 eV Total energy + Delta-G solvation = -3934.324934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.18018 -37.74799 -37.66197 -37.01810 -36.15213 -35.80232 -35.59308 -33.83936 -30.08256 -29.91441 -29.78378 -25.49143 -25.11053 -23.64071 -22.71617 -22.02142 -21.52297 -21.00089 -19.47458 -18.88733 -18.13660 -17.57655 -17.18271 -17.10255 -15.94294 -15.42306 -15.24161 -15.07199 -15.05698 -14.63254 -13.53899 -13.39124 -12.95675 -12.66674 -12.61684 -12.42869 -12.38572 -11.96900 -11.93781 -11.81823 -11.76278 -11.70391 -11.46130 -11.41264 -11.22425 -11.07163 -11.06412 -10.90805 -10.82275 -10.55551 -9.74536 -9.61054 -9.35312 -8.82253 -8.08366 -7.68612 -6.91435 -4.52781 0.32680 1.14464 1.85411 2.15750 2.38623 2.63772 2.99964 3.01480 3.05281 3.07810 3.44322 3.83096 3.89558 4.03487 4.20608 4.33105 4.45363 4.47419 4.58950 4.73164 5.11223 5.28651 5.39184 5.40279 5.52766 5.69468 5.74488 5.83056 6.04830 6.26368 6.35321 6.66471 6.74814 6.86151 7.04992 7.19375 7.38537 7.75171 7.78943 7.93331 8.30558 8.39125 8.67154 8.71320 10.04639 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014091 B = 0.003520 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.673048 B = 7952.390916 C = 8936.764168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.463 4.463 8 H 0.082 0.918 9 C 0.089 3.911 10 C -0.104 4.104 11 C -0.127 4.127 12 C -0.112 4.112 13 C -0.630 4.630 14 S 2.676 3.324 15 O -0.942 6.942 16 O -0.931 6.931 17 N -0.992 5.992 18 C 0.419 3.581 19 N -0.289 5.289 20 N -0.253 5.253 21 C 0.177 3.823 22 C -0.077 4.077 23 C -0.155 4.155 24 C -0.144 4.144 25 O -0.234 6.234 26 C -0.132 4.132 27 H 0.283 0.717 28 H 0.126 0.874 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.437 0.563 32 H 0.136 0.864 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.546 -12.470 10.471 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.493 4.493 8 H 0.100 0.900 9 C 0.085 3.915 10 C -0.124 4.124 11 C -0.146 4.146 12 C -0.134 4.134 13 C -0.725 4.725 14 S 2.775 3.225 15 O -0.933 6.933 16 O -0.921 6.921 17 N -0.744 5.744 18 C 0.117 3.883 19 N -0.144 5.144 20 N -0.099 5.099 21 C -0.036 4.036 22 C -0.096 4.096 23 C -0.194 4.194 24 C -0.182 4.182 25 O -0.113 6.113 26 C -0.154 4.154 27 H 0.094 0.906 28 H 0.144 0.856 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.274 0.726 32 H 0.154 0.846 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.729 -12.574 9.705 16.572 hybrid contribution 2.220 1.273 -0.019 2.559 sum 6.949 -11.301 9.686 16.426 Atomic orbital electron populations 1.69783 1.07634 1.29535 1.35063 1.25925 0.94779 1.01522 0.92084 0.86206 0.80950 0.80627 0.78667 1.18317 1.19844 1.19635 1.19592 0.98328 0.90951 1.40427 0.89980 1.17640 0.91971 0.91928 0.89940 1.21734 0.96987 0.97234 0.96459 1.20869 0.99778 0.93019 1.00955 1.20353 0.95931 0.98167 0.98918 1.29251 1.09907 1.15874 1.17486 1.02582 0.72533 0.75428 0.72004 1.93610 1.73033 1.86258 1.40404 1.93587 1.49451 1.64136 1.84952 1.53664 1.27499 1.77480 1.15782 1.22822 0.85550 0.95327 0.84626 1.75148 1.13338 1.22589 1.03329 1.74156 1.18420 1.12886 1.04402 1.26324 0.84861 1.02714 0.89690 1.20043 1.00330 1.04612 0.84658 1.23196 1.02815 0.90475 1.02866 1.23182 0.99668 0.99442 0.95879 1.84719 1.40546 1.66360 1.19683 1.20724 1.01361 0.91758 1.01517 0.90599 0.85650 0.88067 0.85974 0.72557 0.84598 0.87253 0.87751 0.86723 0.87130 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.87 10.97 55.55 0.61 -19.26 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.87 9.05 -37.74 -0.34 -12.21 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 9 C 0.09 2.29 5.57 -106.83 -0.60 1.70 16 10 C -0.10 -2.61 8.70 -38.87 -0.34 -2.95 16 11 C -0.13 -2.92 10.02 -39.66 -0.40 -3.32 16 12 C -0.11 -2.53 8.70 -39.29 -0.34 -2.87 16 13 C -0.63 -13.94 5.89 -39.66 -0.23 -14.17 16 14 S 2.68 50.24 5.48 -107.50 -0.59 49.65 16 15 O -0.94 -18.66 17.27 -57.17 -0.99 -19.65 16 16 O -0.93 -19.32 16.46 -57.17 -0.94 -20.26 16 17 N -0.99 -14.87 5.84 29.86 0.17 -14.69 16 18 C 0.42 6.92 8.96 -86.88 -0.78 6.14 16 19 N -0.29 -5.38 9.70 29.86 0.29 -5.09 16 20 N -0.25 -4.18 11.81 32.59 0.38 -3.79 16 21 C 0.18 2.40 8.00 -13.03 -0.10 2.30 16 22 C -0.08 -0.66 6.33 -91.73 -0.58 -1.25 16 23 C -0.16 -1.04 10.23 -26.73 -0.27 -1.32 16 24 C -0.14 -1.04 10.15 -26.69 -0.27 -1.31 16 25 O -0.23 -3.35 10.90 3.72 0.04 -3.31 16 26 C -0.13 -3.15 9.26 -38.87 -0.36 -3.51 16 27 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 28 H 0.13 3.19 6.18 -52.49 -0.32 2.86 16 29 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.12 2.66 6.87 -52.49 -0.36 2.30 16 31 H 0.44 4.73 8.95 -34.47 -0.31 4.42 16 32 H 0.14 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.11 1.01 7.91 -51.93 -0.41 0.60 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.11 2.49 7.60 -52.49 -0.40 2.09 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -32.15 339.69 -9.10 -41.25 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -3.47 Total: 8.05 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: -4.70 Total: -31.05 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 1.46 Total: -42.84 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -1.89 Total: -43.22 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 50.24 SS G_CDS: -0.59 Total: 49.65 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.15 -9.10 -41.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589591233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.285 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds