Wall clock time and date at job start Tue Mar 31 2020 18:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86793 * 120.00180 * 2 1 4 4 H 1.48503 * 109.47174 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47185 * 299.99437 * 3 2 1 6 6 H 1.48494 * 109.47223 * 59.99646 * 3 2 1 7 7 C 1.39953 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99647 * 162.22017 * 7 2 1 9 9 C 1.41395 * 119.99846 * 342.21744 * 7 2 1 10 10 C 1.40735 * 120.24505 * 335.28165 * 9 7 2 11 11 C 1.37596 * 119.74376 * 180.02562 * 10 9 7 12 12 C 1.38668 * 120.24728 * 359.72698 * 11 10 9 13 13 C 1.38605 * 120.49767 * 0.54789 * 12 11 10 14 14 S 1.76202 * 119.87342 * 179.72435 * 13 12 11 15 15 O 1.42099 * 106.40458 * 156.19206 * 14 13 12 16 16 O 1.42095 * 106.40229 * 23.26813 * 14 13 12 17 17 N 1.65602 * 107.21843 * 269.72933 * 14 13 12 18 18 C 1.38256 * 120.00098 * 65.00031 * 17 14 13 19 19 N 1.31075 * 126.36916 * 0.03867 * 18 17 14 20 20 N 1.28659 * 109.31460 * 179.69748 * 19 18 17 21 21 C 1.30068 * 109.54512 * 0.44713 * 20 19 18 22 22 C 1.50700 * 126.21254 * 179.82553 * 21 20 19 23 23 C 1.52999 * 117.49934 * 59.68824 * 22 21 20 24 24 C 1.53004 * 60.03284 * 252.52193 * 23 22 21 25 25 O 1.34585 * 126.37462 * 179.97438 * 18 17 14 26 26 C 1.37641 * 120.25283 * 359.45348 * 13 12 11 27 27 H 0.97003 * 119.99945 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.12761 * 0.02562 * 10 9 7 29 29 H 1.07994 * 119.88065 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.74538 * 180.29566 * 12 11 10 31 31 H 0.96997 * 120.00150 * 244.99846 * 17 14 13 32 32 H 1.08994 * 115.55993 * 205.38242 * 22 21 20 33 33 H 1.09000 * 117.49739 * 145.02310 * 23 22 21 34 34 H 1.08999 * 117.49786 * 0.02562 * 23 22 21 35 35 H 1.09001 * 117.49715 * 107.48138 * 24 23 22 36 36 H 1.08999 * 117.49896 * 252.47257 * 24 23 22 37 37 H 1.07998 * 120.12975 * 180.25139 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3964 1.2124 7 6 2.0079 -1.2121 0.0005 8 1 3.0492 -1.2345 -0.2851 9 6 1.3515 -2.4071 0.3751 10 6 0.2234 -2.3629 1.2153 11 6 -0.4071 -3.5322 1.5737 12 6 0.0617 -4.7504 1.1057 13 6 1.1752 -4.8062 0.2823 14 16 1.7612 -6.3637 -0.2971 15 8 2.4871 -6.1009 -1.4900 16 8 0.6557 -7.2547 -0.2402 17 7 2.8634 -6.9150 0.8091 18 6 2.4567 -7.2301 2.0923 19 7 1.2374 -7.1410 2.5651 20 7 1.2286 -7.5225 3.7938 21 6 2.4325 -7.8582 4.1539 22 6 2.8487 -8.3557 5.5142 23 6 2.1911 -9.6374 6.0294 24 6 1.8133 -8.2861 6.6394 25 8 3.2387 -7.6864 3.0881 26 6 1.8218 -3.6492 -0.0891 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1460 -1.4149 1.5773 29 1 -1.2733 -3.5008 2.2180 30 1 -0.4423 -5.6628 1.3882 31 1 3.7944 -7.0170 0.5566 32 1 3.8920 -8.1839 5.7787 33 1 2.8018 -10.3089 6.6329 34 1 1.4576 -10.1211 5.3842 35 1 0.8313 -7.8807 6.3954 36 1 2.1750 -8.0689 7.6444 37 1 2.6868 -3.6947 -0.7341 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589591233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:31 Heat of formation + Delta-G solvation = -0.869837 kcal Electronic energy + Delta-G solvation = -26048.252223 eV Core-core repulsion = 22112.847452 eV Total energy + Delta-G solvation = -3935.404771 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.37025 -39.50033 -38.65796 -38.40814 -37.37063 -37.26073 -36.98181 -35.68032 -31.94040 -31.68748 -31.01581 -27.35662 -26.14026 -24.88651 -23.77851 -23.26139 -22.84649 -22.49249 -20.91226 -20.24145 -19.76871 -18.85116 -18.64903 -18.05050 -17.74092 -16.93791 -16.73836 -16.49721 -16.37372 -15.65139 -15.34063 -15.12232 -14.37164 -14.02717 -13.94235 -13.74460 -13.62571 -13.55568 -13.42654 -13.41961 -13.22680 -13.15638 -13.00957 -12.86586 -12.62940 -12.38282 -12.24848 -12.15713 -11.87464 -11.55071 -11.51395 -11.39626 -11.15571 -10.01231 -9.93008 -9.57020 -8.73343 -6.45532 -1.18400 -0.00238 0.28602 0.65981 0.82833 1.18148 1.37658 1.44818 1.53100 1.78381 2.17588 2.32650 2.54656 2.78400 2.83583 3.12990 3.22337 3.49985 3.60069 3.84881 3.99846 4.07503 4.25609 4.43482 4.54139 4.57984 4.81265 4.81459 4.86807 4.92908 4.99933 5.12832 5.17954 5.27353 5.27710 5.37118 5.53811 5.88311 5.90589 6.05993 6.49684 6.78866 6.82016 7.10250 8.25409 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014091 B = 0.003520 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.673048 B = 7952.390916 C = 8936.764168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.497 4.497 8 H 0.084 0.916 9 C 0.060 3.940 10 C -0.128 4.128 11 C -0.130 4.130 12 C -0.117 4.117 13 C -0.640 4.640 14 S 2.720 3.280 15 O -0.949 6.949 16 O -0.948 6.948 17 N -0.976 5.976 18 C 0.407 3.593 19 N -0.324 5.324 20 N -0.289 5.289 21 C 0.196 3.804 22 C -0.097 4.097 23 C -0.138 4.138 24 C -0.141 4.141 25 O -0.226 6.226 26 C -0.145 4.145 27 H 0.292 0.708 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.456 0.544 32 H 0.166 0.834 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.141 0.859 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.239 -13.348 11.836 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.526 4.526 8 H 0.102 0.898 9 C 0.057 3.943 10 C -0.148 4.148 11 C -0.149 4.149 12 C -0.138 4.138 13 C -0.731 4.731 14 S 2.815 3.185 15 O -0.940 6.940 16 O -0.937 6.937 17 N -0.734 5.734 18 C 0.103 3.897 19 N -0.179 5.179 20 N -0.133 5.133 21 C -0.017 4.017 22 C -0.116 4.116 23 C -0.176 4.176 24 C -0.178 4.178 25 O -0.105 6.105 26 C -0.166 4.166 27 H 0.102 0.898 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.148 0.852 31 H 0.298 0.702 32 H 0.183 0.817 33 H 0.161 0.839 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.159 0.841 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.400 -13.434 11.083 18.555 hybrid contribution 1.698 1.359 -0.337 2.200 sum 8.098 -12.076 10.747 18.080 Atomic orbital electron populations 1.69828 1.09070 1.30965 1.35233 1.26798 0.95525 1.04691 0.91021 0.85099 0.79460 0.75857 0.78975 1.17957 1.19131 1.18772 1.19877 0.98697 0.92040 1.42002 0.89836 1.18013 0.92666 0.93048 0.90559 1.21698 0.97896 0.97439 0.97724 1.21130 1.00156 0.92726 1.00885 1.20514 0.96158 0.98156 0.98968 1.29764 1.09469 1.17629 1.16279 1.01285 0.72115 0.73729 0.71420 1.93598 1.73159 1.86151 1.41071 1.93567 1.51014 1.63821 1.85342 1.53000 1.28210 1.77005 1.15209 1.22762 0.85627 0.96106 0.85156 1.75036 1.14727 1.23521 1.04579 1.74107 1.20072 1.15184 1.03969 1.27471 0.84022 0.99638 0.90596 1.20587 1.02242 1.06466 0.82334 1.23320 1.02106 0.90190 1.01993 1.23296 0.98236 0.99660 0.96625 1.84748 1.40143 1.66176 1.19432 1.20887 1.01931 0.91860 1.01918 0.89755 0.86763 0.85998 0.85244 0.70208 0.81651 0.83867 0.89210 0.88921 0.84118 0.86136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.11 10.97 21.83 0.24 -41.87 16 2 C 0.03 1.71 5.14 85.26 0.44 2.15 16 3 Si 0.99 37.04 29.59 68.60 2.03 39.07 16 4 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 5 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 6 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.50 -26.11 9.05 23.46 0.21 -25.90 16 8 H 0.08 4.18 7.91 -2.91 -0.02 4.16 16 9 C 0.06 3.22 5.57 -21.29 -0.12 3.10 16 10 C -0.13 -6.63 8.70 22.73 0.20 -6.44 16 11 C -0.13 -6.13 10.02 22.22 0.22 -5.90 16 12 C -0.12 -5.35 8.70 22.46 0.20 -5.16 16 13 C -0.64 -28.56 5.89 22.22 0.13 -28.43 16 14 S 2.72 100.54 5.48 -56.49 -0.31 100.23 16 15 O -0.95 -36.65 17.27 -128.00 -2.21 -38.86 16 16 O -0.95 -38.85 16.46 -128.00 -2.11 -40.95 16 17 N -0.98 -28.27 5.84 -169.64 -0.99 -29.26 16 18 C 0.41 13.15 8.96 179.04 1.60 14.76 16 19 N -0.32 -12.05 9.70 -173.50 -1.68 -13.74 16 20 N -0.29 -9.52 11.81 -165.27 -1.95 -11.47 16 21 C 0.20 5.06 8.00 88.37 0.71 5.77 16 22 C -0.10 -1.42 6.33 -11.51 -0.07 -1.49 16 23 C -0.14 -1.44 10.23 30.60 0.31 -1.13 16 24 C -0.14 -1.68 10.15 30.62 0.31 -1.37 16 25 O -0.23 -6.16 10.90 -9.60 -0.10 -6.27 16 26 C -0.14 -7.04 9.26 22.73 0.21 -6.83 16 27 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 28 H 0.11 6.07 6.18 -2.91 -0.02 6.06 16 29 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 30 H 0.13 5.70 6.87 -2.91 -0.02 5.68 16 31 H 0.46 9.15 8.95 -96.75 -0.87 8.28 16 32 H 0.17 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.56 7.91 -2.39 -0.02 1.55 16 36 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.12 5.47 7.60 -2.91 -0.02 5.45 16 Total: -1.00 -71.09 339.69 -2.45 -73.55 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.28 Total: 26.44 kcal Atomic # 6 Polarization: -61.22 SS G_CDS: 4.35 Total: -56.87 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -4.39 Total: -96.33 kcal Atomic # 8 Polarization: -81.67 SS G_CDS: -4.42 Total: -86.09 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Atomic # 16 Polarization: 100.54 SS G_CDS: -0.31 Total: 100.23 kcal Total: -71.09 -2.45 -73.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589591233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.677 kcal (2) G-P(sol) polarization free energy of solvation -71.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds