Wall clock time and date at job start Tue Mar 31 2020 19:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99837 * 2 1 4 4 H 1.48500 * 109.46790 * 274.99548 * 3 2 1 5 5 H 1.48496 * 109.47595 * 34.99641 * 3 2 1 6 6 H 1.48502 * 109.47175 * 154.99850 * 3 2 1 7 7 C 1.37877 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00157 * 184.92647 * 7 2 1 9 9 C 1.50706 * 120.00222 * 4.93129 * 7 2 1 10 10 O 1.42899 * 110.87084 * 298.59932 * 9 7 2 11 11 C 1.55136 * 110.99155 * 174.75255 * 9 7 2 12 12 C 1.54309 * 103.01967 * 206.21679 * 11 9 7 13 13 N 1.47444 * 107.23524 * 22.28270 * 12 11 9 14 14 C 1.37396 * 110.99689 * 123.25537 * 13 12 11 15 15 N 1.31993 * 126.55529 * 60.17769 * 14 13 12 16 16 C 1.35062 * 105.47449 * 180.14051 * 15 14 13 17 17 C 1.48436 * 126.33506 * 179.84872 * 16 15 14 18 18 C 1.39343 * 120.11370 * 359.70387 * 17 16 15 19 19 C 1.38002 * 119.90545 * 180.02562 * 18 17 16 20 20 C 1.38321 * 120.13640 * 359.97438 * 19 18 17 21 21 C 1.38415 * 120.22494 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 119.95640 * 180.02562 * 21 20 19 23 23 C 1.38162 * 120.09433 * 0.02562 * 21 20 19 24 24 N 1.30802 * 107.32274 * 359.57836 * 16 15 14 25 25 O 1.21267 * 110.34644 * 0.26585 * 24 16 15 26 26 C 1.47846 * 108.56357 * 0.99401 * 13 12 11 27 27 H 0.96998 * 120.00286 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00339 * 56.15804 * 10 9 7 29 29 H 1.09002 * 110.70380 * 87.83381 * 11 9 7 30 30 H 1.09009 * 110.85674 * 324.67215 * 11 9 7 31 31 H 1.09006 * 109.89220 * 262.87858 * 12 11 9 32 32 H 1.09001 * 110.02736 * 141.76515 * 12 11 9 33 33 H 1.08004 * 120.04622 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.93377 * 179.97438 * 19 18 17 35 35 H 1.07995 * 119.89072 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.07199 * 179.70360 * 23 21 20 37 37 H 1.08996 * 110.37472 * 94.73422 * 26 13 12 38 38 H 1.09007 * 110.37278 * 217.07071 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1073 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5917 7 6 2.0046 -1.1941 0.0005 8 1 3.0816 -1.1958 0.0809 9 6 1.2553 -2.4969 -0.1111 10 8 0.3624 -2.6667 0.9916 11 6 2.2356 -3.6941 -0.2219 12 6 1.4067 -4.7533 -0.9783 13 7 0.3455 -4.0370 -1.7095 14 6 0.4024 -4.3123 -3.0544 15 7 0.2834 -5.4992 -3.6196 16 6 0.4081 -5.2805 -4.9466 17 6 0.3500 -6.3078 -6.0165 18 6 0.1560 -7.6482 -5.6889 19 6 0.1032 -8.5997 -6.6871 20 6 0.2420 -8.2254 -8.0114 21 6 0.4340 -6.8954 -8.3431 22 17 0.6067 -6.4333 -10.0075 23 6 0.4883 -5.9349 -7.3514 24 7 0.5837 -3.9953 -5.1147 25 8 0.5832 -3.4260 -4.0440 26 6 0.4967 -2.5879 -1.4586 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2696 -1.9430 1.1011 29 1 2.5140 -4.0570 0.7675 30 1 3.1221 -3.4182 -0.7932 31 1 0.9620 -5.4518 -0.2694 32 1 2.0421 -5.2925 -1.6809 33 1 0.0478 -7.9421 -4.6553 34 1 -0.0468 -9.6388 -6.4337 35 1 0.1997 -8.9733 -8.7893 36 1 0.6429 -4.8979 -7.6103 37 1 1.0793 -2.1237 -2.2543 38 1 -0.4811 -2.1129 -1.3765 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591977205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:07 Heat of formation + Delta-G solvation = 53.092278 kcal Electronic energy + Delta-G solvation = -25730.350890 eV Core-core repulsion = 21795.242385 eV Total energy + Delta-G solvation = -3935.108505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.11820 -39.57191 -39.04080 -36.81280 -35.64375 -35.04504 -32.43983 -32.26970 -31.11057 -30.87344 -29.32129 -28.13924 -25.27779 -24.60209 -23.70482 -22.48879 -21.94031 -20.52088 -19.75008 -18.24516 -17.85967 -17.29858 -16.77172 -16.08550 -15.92199 -15.41931 -15.18374 -14.87626 -14.39243 -14.05720 -13.93630 -13.91480 -13.30401 -13.10146 -12.77467 -12.26786 -12.25092 -12.11224 -11.90229 -11.80688 -11.65466 -11.43169 -11.21907 -11.12385 -10.97909 -10.84387 -10.76030 -10.58472 -10.37924 -10.12711 -9.52219 -9.21358 -8.95639 -8.77526 -8.46353 -8.23766 -6.41417 -4.50237 0.48172 0.87351 1.54586 1.78401 2.46902 2.87257 3.14219 3.23096 3.25455 3.45174 3.46331 3.94902 4.17972 4.47110 4.61849 4.79355 4.86905 4.88233 5.06398 5.21750 5.25656 5.38685 5.46353 5.59923 5.65265 5.79235 5.88145 5.97316 6.03773 6.12076 6.19079 6.25304 6.38365 6.46869 6.56524 6.80701 7.01990 7.16566 7.19575 7.62546 7.86062 8.44617 8.54072 9.19290 9.34017 10.66289 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.002564 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.095369 B =10915.960299 C =11867.425957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.258 3.742 10 O -0.579 6.579 11 C -0.130 4.130 12 C 0.060 3.940 13 N -0.412 5.412 14 C 0.376 3.624 15 N -0.500 5.500 16 C 0.212 3.788 17 C 0.005 3.995 18 C -0.072 4.072 19 C -0.110 4.110 20 C -0.098 4.098 21 C -0.038 4.038 22 Cl -0.066 7.066 23 C -0.078 4.078 24 N -0.384 5.384 25 O 0.053 5.947 26 C 0.021 3.979 27 H 0.272 0.728 28 H 0.386 0.614 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.068 0.932 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -13.900 -12.504 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.217 3.783 10 O -0.388 6.388 11 C -0.168 4.168 12 C -0.065 4.065 13 N -0.140 5.140 14 C 0.068 3.932 15 N -0.241 5.241 16 C -0.059 4.059 17 C 0.003 3.997 18 C -0.092 4.092 19 C -0.128 4.128 20 C -0.117 4.117 21 C -0.065 4.065 22 Cl -0.037 7.037 23 C -0.099 4.099 24 N -0.099 5.099 25 O 0.000 6.000 26 C -0.104 4.104 27 H 0.082 0.918 28 H 0.238 0.762 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.087 0.913 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.234 -14.437 -13.118 19.508 hybrid contribution 0.533 1.924 -0.361 2.028 sum 0.767 -12.513 -13.479 18.408 Atomic orbital electron populations 1.69610 1.06021 1.28158 1.49448 1.25066 0.95063 0.99835 0.93125 0.86376 0.79927 0.82323 0.78291 1.20337 1.20879 1.19603 1.21487 0.94145 0.89989 1.52286 0.91342 1.19478 0.85445 0.91647 0.81756 1.86101 1.51044 1.50778 1.50902 1.22846 0.97996 0.95460 1.00494 1.22972 0.89991 0.96800 0.96763 1.60491 1.43536 1.14509 0.95499 1.26737 0.92022 0.83174 0.91287 1.72304 1.27113 1.21117 1.03569 1.23440 1.01555 0.90294 0.90608 1.17209 1.02809 0.90777 0.88866 1.21389 0.95735 0.90952 1.01082 1.21088 1.00073 1.00116 0.91519 1.21205 0.98991 0.94126 0.97425 1.20702 1.05879 0.94312 0.85600 1.98379 1.96149 1.92701 1.16519 1.21060 0.98184 1.00205 0.90444 1.74805 1.23122 1.08225 1.03728 1.85455 1.66206 1.37195 1.11157 1.24286 1.04526 0.79527 1.02072 0.91789 0.76244 0.89993 0.90615 0.88822 0.92128 0.83803 0.84209 0.84525 0.84014 0.91324 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.21 10.70 55.43 0.59 -21.62 16 2 C 0.07 1.79 5.26 -17.82 -0.09 1.69 16 3 Si 0.90 19.48 29.54 -169.99 -5.02 14.46 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -13.28 8.26 -34.44 -0.28 -13.57 16 8 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 9 C 0.26 5.82 0.89 -89.63 -0.08 5.74 16 10 O -0.58 -13.82 13.19 -35.23 -0.46 -14.28 16 11 C -0.13 -2.45 6.11 -24.92 -0.15 -2.60 16 12 C 0.06 1.04 6.80 -2.84 -0.02 1.02 16 13 N -0.41 -8.04 5.23 -172.37 -0.90 -8.94 16 14 C 0.38 7.17 7.15 -87.43 -0.63 6.54 16 15 N -0.50 -8.95 11.17 -13.10 -0.15 -9.09 16 16 C 0.21 3.58 7.79 -156.22 -1.22 2.37 16 17 C 0.01 0.07 5.88 -104.89 -0.62 -0.54 16 18 C -0.07 -0.80 9.70 -39.26 -0.38 -1.18 16 19 C -0.11 -0.92 10.03 -39.64 -0.40 -1.32 16 20 C -0.10 -0.84 9.82 -39.49 -0.39 -1.23 16 21 C -0.04 -0.40 6.31 -39.54 -0.25 -0.65 16 22 Cl -0.07 -0.65 28.95 -51.86 -1.50 -2.15 16 23 C -0.08 -0.97 9.47 -39.22 -0.37 -1.34 16 24 N -0.38 -7.04 11.84 31.18 0.37 -6.67 16 25 O 0.05 1.03 9.94 17.01 0.17 1.20 16 26 C 0.02 0.45 5.09 -2.30 -0.01 0.44 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.39 9.45 7.18 45.56 0.33 9.77 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.08 1.37 8.04 -51.92 -0.42 0.95 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.06 0.97 7.50 -51.93 -0.39 0.58 16 33 H 0.14 1.56 7.87 -52.48 -0.41 1.15 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.14 1.81 7.87 -52.49 -0.41 1.39 16 37 H 0.07 1.52 6.84 -51.93 -0.36 1.16 16 38 H 0.10 2.45 7.60 -51.92 -0.39 2.05 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -25.99 341.85 -9.93 -35.92 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -3.29 Total: 10.67 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -4.89 Total: -4.64 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.09 Total: -46.33 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.30 Total: -13.09 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -25.99 -9.93 -35.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.014 kcal (2) G-P(sol) polarization free energy of solvation -25.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds