Wall clock time and date at job start Tue Mar 31 2020 19:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99837 * 2 1 4 4 H 1.48500 * 109.46790 * 274.99548 * 3 2 1 5 5 H 1.48496 * 109.47595 * 34.99641 * 3 2 1 6 6 H 1.48502 * 109.47175 * 154.99850 * 3 2 1 7 7 C 1.37877 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00157 * 184.92647 * 7 2 1 9 9 C 1.50706 * 120.00222 * 4.93129 * 7 2 1 10 10 O 1.42899 * 110.87084 * 298.59932 * 9 7 2 11 11 C 1.55136 * 110.99155 * 174.75255 * 9 7 2 12 12 C 1.54309 * 103.01967 * 206.21679 * 11 9 7 13 13 N 1.47444 * 107.23524 * 22.28270 * 12 11 9 14 14 C 1.37396 * 110.99689 * 123.25537 * 13 12 11 15 15 N 1.31993 * 126.55529 * 60.17769 * 14 13 12 16 16 C 1.35062 * 105.47449 * 180.14051 * 15 14 13 17 17 C 1.48436 * 126.33506 * 179.84872 * 16 15 14 18 18 C 1.39343 * 120.11370 * 359.70387 * 17 16 15 19 19 C 1.38002 * 119.90545 * 180.02562 * 18 17 16 20 20 C 1.38321 * 120.13640 * 359.97438 * 19 18 17 21 21 C 1.38415 * 120.22494 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 119.95640 * 180.02562 * 21 20 19 23 23 C 1.38162 * 120.09433 * 0.02562 * 21 20 19 24 24 N 1.30802 * 107.32274 * 359.57836 * 16 15 14 25 25 O 1.21267 * 110.34644 * 0.26585 * 24 16 15 26 26 C 1.47846 * 108.56357 * 0.99401 * 13 12 11 27 27 H 0.96998 * 120.00286 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00339 * 56.15804 * 10 9 7 29 29 H 1.09002 * 110.70380 * 87.83381 * 11 9 7 30 30 H 1.09009 * 110.85674 * 324.67215 * 11 9 7 31 31 H 1.09006 * 109.89220 * 262.87858 * 12 11 9 32 32 H 1.09001 * 110.02736 * 141.76515 * 12 11 9 33 33 H 1.08004 * 120.04622 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.93377 * 179.97438 * 19 18 17 35 35 H 1.07995 * 119.89072 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.07199 * 179.70360 * 23 21 20 37 37 H 1.08996 * 110.37472 * 94.73422 * 26 13 12 38 38 H 1.09007 * 110.37278 * 217.07071 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3910 2.1073 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5917 7 6 2.0046 -1.1941 0.0005 8 1 3.0816 -1.1958 0.0809 9 6 1.2553 -2.4969 -0.1111 10 8 0.3624 -2.6667 0.9916 11 6 2.2356 -3.6941 -0.2219 12 6 1.4067 -4.7533 -0.9783 13 7 0.3455 -4.0370 -1.7095 14 6 0.4024 -4.3123 -3.0544 15 7 0.2834 -5.4992 -3.6196 16 6 0.4081 -5.2805 -4.9466 17 6 0.3500 -6.3078 -6.0165 18 6 0.1560 -7.6482 -5.6889 19 6 0.1032 -8.5997 -6.6871 20 6 0.2420 -8.2254 -8.0114 21 6 0.4340 -6.8954 -8.3431 22 17 0.6067 -6.4333 -10.0075 23 6 0.4883 -5.9349 -7.3514 24 7 0.5837 -3.9953 -5.1147 25 8 0.5832 -3.4260 -4.0440 26 6 0.4967 -2.5879 -1.4586 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2696 -1.9430 1.1011 29 1 2.5140 -4.0570 0.7675 30 1 3.1221 -3.4182 -0.7932 31 1 0.9620 -5.4518 -0.2694 32 1 2.0421 -5.2925 -1.6809 33 1 0.0478 -7.9421 -4.6553 34 1 -0.0468 -9.6388 -6.4337 35 1 0.1997 -8.9733 -8.7893 36 1 0.6429 -4.8979 -7.6103 37 1 1.0793 -2.1237 -2.2543 38 1 -0.4811 -2.1129 -1.3765 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:06 Heat of formation + Delta-G solvation = 35.935339 kcal Electronic energy + Delta-G solvation = -25731.094871 eV Core-core repulsion = 21795.242385 eV Total energy + Delta-G solvation = -3935.852485 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.52121 -40.68144 -40.38076 -37.64336 -37.15835 -36.55034 -34.21132 -33.71974 -32.15190 -31.82046 -30.78163 -29.80985 -27.00644 -25.83519 -24.95961 -23.51345 -23.19481 -21.84020 -21.43402 -19.66040 -19.28180 -18.88555 -17.92932 -17.47017 -17.13366 -16.79699 -16.62797 -16.14682 -15.78670 -15.29902 -14.95314 -14.77987 -14.74722 -14.63837 -14.47840 -13.83370 -13.52831 -13.42416 -13.35966 -12.88186 -12.80458 -12.72172 -12.67973 -12.53512 -12.32772 -12.27039 -12.20007 -12.09533 -11.97928 -11.54057 -11.26964 -10.64197 -10.30857 -10.12595 -9.91273 -9.66693 -8.28506 -6.43295 -0.51131 0.06114 0.17994 0.98932 1.24819 1.40892 1.43603 1.46304 1.54101 2.14025 2.37735 2.56926 2.65927 2.99458 3.30961 3.70104 3.74956 3.83649 3.95596 4.01659 4.09081 4.10633 4.27382 4.30473 4.47651 4.56112 4.63157 4.66361 4.76739 4.90313 4.95648 5.04139 5.19587 5.25992 5.29375 5.31789 5.40123 5.61869 5.63905 5.75614 6.01812 6.63353 7.02438 7.28756 7.41933 8.77713 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.020842 B = 0.002564 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.095369 B =10915.960299 C =11867.425957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.034 3.966 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.066 0.934 9 C 0.242 3.758 10 O -0.584 6.584 11 C -0.124 4.124 12 C 0.064 3.936 13 N -0.417 5.417 14 C 0.368 3.632 15 N -0.498 5.498 16 C 0.224 3.776 17 C -0.027 4.027 18 C -0.072 4.072 19 C -0.095 4.095 20 C -0.082 4.082 21 C -0.045 4.045 22 Cl -0.062 7.062 23 C -0.087 4.087 24 N -0.403 5.403 25 O 0.031 5.969 26 C 0.037 3.963 27 H 0.273 0.727 28 H 0.380 0.620 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.145 0.855 34 H 0.180 0.820 35 H 0.170 0.830 36 H 0.128 0.872 37 H 0.057 0.943 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 -16.395 -13.681 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.168 4.168 3 Si 0.784 3.216 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.084 0.916 9 C 0.202 3.798 10 O -0.393 6.393 11 C -0.162 4.162 12 C -0.060 4.060 13 N -0.145 5.145 14 C 0.059 3.941 15 N -0.239 5.239 16 C -0.048 4.048 17 C -0.030 4.030 18 C -0.092 4.092 19 C -0.112 4.112 20 C -0.101 4.101 21 C -0.072 4.072 22 Cl -0.033 7.033 23 C -0.108 4.108 24 N -0.122 5.122 25 O -0.017 6.017 26 C -0.088 4.088 27 H 0.082 0.918 28 H 0.230 0.770 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.163 0.837 34 H 0.197 0.803 35 H 0.187 0.813 36 H 0.146 0.854 37 H 0.075 0.925 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.715 -16.930 -14.278 22.158 hybrid contribution 0.366 2.568 -0.115 2.596 sum 1.081 -14.362 -14.393 20.361 Atomic orbital electron populations 1.69690 1.06834 1.28654 1.49689 1.25702 0.95773 1.02379 0.92960 0.85532 0.78917 0.79171 0.77995 1.20442 1.20709 1.19313 1.21756 0.94246 0.91223 1.52518 0.91618 1.19685 0.85935 0.92652 0.81566 1.86090 1.51117 1.50456 1.51619 1.22817 0.97554 0.94325 1.01488 1.23031 0.89624 0.96317 0.97025 1.60436 1.44619 1.13270 0.96176 1.26789 0.92500 0.83640 0.91135 1.72307 1.27043 1.20442 1.04084 1.24068 0.99277 0.90468 0.90966 1.17343 1.06115 0.91145 0.88363 1.21542 0.95370 0.90263 1.02053 1.21500 0.97860 1.01311 0.90576 1.21644 0.96286 0.93713 0.98451 1.20823 1.06038 0.94876 0.85450 1.98383 1.96131 1.92840 1.15933 1.20984 0.98984 1.00195 0.90652 1.74800 1.24964 1.09115 1.03274 1.85436 1.67014 1.37752 1.11533 1.23879 1.02749 0.80844 1.01369 0.91779 0.76986 0.88951 0.89933 0.87452 0.90491 0.83689 0.80270 0.81282 0.85394 0.92506 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.14 10.70 21.45 0.23 -45.91 16 2 C 0.03 1.67 5.26 84.65 0.44 2.11 16 3 Si 0.96 40.21 29.54 68.60 2.03 42.24 16 4 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.56 -27.77 8.26 25.60 0.21 -27.56 16 8 H 0.07 3.22 7.79 -2.91 -0.02 3.19 16 9 C 0.24 11.06 0.89 -10.16 -0.01 11.06 16 10 O -0.58 -28.27 13.19 -148.98 -1.96 -30.23 16 11 C -0.12 -4.59 6.11 31.77 0.19 -4.40 16 12 C 0.06 2.18 6.80 86.64 0.59 2.77 16 13 N -0.42 -16.39 5.23 -810.22 -4.23 -20.62 16 14 C 0.37 14.20 7.15 179.23 1.28 15.48 16 15 N -0.50 -17.69 11.17 -311.48 -3.48 -21.17 16 16 C 0.22 7.58 7.79 137.34 1.07 8.65 16 17 C -0.03 -0.73 5.88 -20.04 -0.12 -0.85 16 18 C -0.07 -1.44 9.70 22.48 0.22 -1.22 16 19 C -0.09 -1.20 10.03 22.23 0.22 -0.98 16 20 C -0.08 -1.08 9.82 22.33 0.22 -0.86 16 21 C -0.05 -0.85 6.31 22.29 0.14 -0.71 16 22 Cl -0.06 -1.10 28.95 -2.72 -0.08 -1.18 16 23 C -0.09 -2.12 9.47 22.50 0.21 -1.90 16 24 N -0.40 -15.21 11.84 -57.87 -0.68 -15.90 16 25 O 0.03 1.24 9.94 70.95 0.71 1.95 16 26 C 0.04 1.66 5.09 86.77 0.44 2.11 16 27 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 28 H 0.38 19.10 7.18 -74.06 -0.53 18.57 16 29 H 0.09 3.21 8.14 -2.39 -0.02 3.20 16 30 H 0.08 2.92 8.04 -2.38 -0.02 2.90 16 31 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 32 H 0.08 2.36 7.50 -2.39 -0.02 2.34 16 33 H 0.15 2.83 7.87 -2.91 -0.02 2.81 16 34 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 35 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.13 3.36 7.87 -2.91 -0.02 3.34 16 37 H 0.06 2.62 6.84 -2.39 -0.02 2.60 16 38 H 0.08 3.97 7.60 -2.38 -0.02 3.95 16 Total: -1.00 -56.86 341.85 -1.76 -58.63 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.59 Total: 28.51 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.12 Total: 3.68 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -8.17 Total: -103.60 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.26 Total: -28.28 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -56.86 -1.76 -58.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.564 kcal (2) G-P(sol) polarization free energy of solvation -56.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds