Wall clock time and date at job start Tue Mar 31 2020 18:20:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13599 * 1
3 3 C 1.43205 * 179.97438 * 2 1
4 4 C 1.44354 * 123.51064 * 120.46653 * 3 2 1
5 5 C 1.32506 * 114.30569 * 180.02562 * 4 3 2
6 6 S 1.75537 * 111.00934 * 359.73512 * 5 4 3
7 7 C 1.37295 * 123.50481 * 300.50711 * 3 2 1
8 8 N 1.38500 * 125.13564 * 359.96238 * 7 3 2
9 9 C 1.34773 * 119.99827 * 180.02562 * 8 7 3
10 10 O 1.21391 * 120.00423 * 359.97438 * 9 8 7
11 11 C 1.49273 * 119.99741 * 180.02562 * 9 8 7
12 12 O 1.21375 * 120.00083 * 359.97438 * 11 9 8
13 13 N 1.34774 * 120.00040 * 180.02562 * 11 9 8
14 14 C 1.47427 * 125.64938 * 359.94937 * 13 11 9
15 15 C 1.54903 * 104.83302 * 204.17256 * 14 13 11
16 16 C 1.55162 * 101.58348 * 322.98917 * 15 14 13
17 17 O 1.42902 * 110.72174 * 277.14646 * 16 15 14
18 18 C 1.50693 * 110.87342 * 153.93801 * 16 15 14
19 19 H 1.08001 * 119.99908 * 268.89238 * 18 16 15
20 20 C 1.37874 * 120.00042 * 88.89407 * 18 16 15
21 21 N 1.31520 * 120.00408 * 173.91338 * 20 18 16
22 22 Si 1.86808 * 120.00037 * 353.90935 * 20 18 16
23 23 H 1.48499 * 109.46928 * 86.76593 * 22 20 18
24 24 H 1.48495 * 109.47170 * 206.76895 * 22 20 18
25 25 H 1.48504 * 109.46684 * 326.76890 * 22 20 18
26 26 C 1.47025 * 125.64727 * 180.02562 * 13 11 9
27 27 H 1.08007 * 122.84437 * 0.06900 * 4 3 2
28 28 H 1.08004 * 124.49627 * 179.97438 * 5 4 3
29 29 H 0.96997 * 119.99741 * 0.02562 * 8 7 3
30 30 H 1.09005 * 110.36752 * 323.01106 * 14 13 11
31 31 H 1.09001 * 110.36325 * 85.33158 * 14 13 11
32 32 H 1.09005 * 111.00014 * 204.92163 * 15 14 13
33 33 H 1.09000 * 111.00652 * 81.06476 * 15 14 13
34 34 H 0.96691 * 114.00094 * 169.76277 * 17 16 15
35 35 H 0.96997 * 119.99855 * 179.97438 * 21 20 18
36 36 H 1.09001 * 109.88215 * 59.48368 * 26 13 11
37 37 H 1.08994 * 109.87963 * 298.31335 * 26 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.3647 0.6113 -1.0374
5 6 4.6728 0.5039 -0.8550
6 16 5.0323 -0.3611 0.6296
7 6 3.3262 -0.5802 0.9863
8 7 2.8220 -1.2346 2.0980
9 6 3.6639 -1.7682 3.0052
10 8 4.8640 -1.6757 2.8477
11 6 3.1205 -2.4740 4.2030
12 8 1.9205 -2.5668 4.3603
13 7 3.9623 -3.0072 5.1105
14 6 5.4345 -2.9676 5.0442
15 6 5.9023 -4.1769 5.8916
16 6 4.8589 -4.1748 7.0401
17 8 5.2280 -3.2410 8.0568
18 6 4.6967 -5.5559 7.6207
19 1 3.9469 -6.2241 7.2235
20 6 5.5055 -5.9665 8.6590
21 7 5.2868 -7.1234 9.2452
22 14 6.9123 -4.8798 9.2333
23 1 6.4109 -3.9139 10.2436
24 1 7.9739 -5.7232 9.8389
25 1 7.4701 -4.1384 8.0738
26 6 3.5644 -3.7260 6.3298
27 1 2.9313 1.1137 -1.8896
28 1 5.4188 0.8997 -1.5282
29 1 1.8631 -1.3088 2.2236
30 1 5.7708 -3.0743 4.0128
31 1 5.8086 -2.0373 5.4717
32 1 6.9089 -4.0171 6.2781
33 1 5.8484 -5.1013 5.3165
34 1 4.5387 -3.0852 8.7167
35 1 5.8561 -7.4124 9.9755
36 1 2.9642 -4.5972 6.0673
37 1 2.9949 -3.0635 6.9815
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000592304274.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:20:49
Heat of formation + Delta-G solvation = -32.572218 kcal
Electronic energy + Delta-G solvation = -25723.639329 eV
Core-core repulsion = 21786.859840 eV
Total energy + Delta-G solvation = -3936.779489 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.077 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.31113 -39.44478 -38.37956 -37.86054 -36.23068 -35.49824 -34.69374 -32.46820
-30.61066 -29.71686 -28.65489 -26.64842 -25.26652 -23.77323 -22.40344 -21.73970
-20.50895 -19.89504 -19.22636 -18.09077 -17.78357 -16.97938 -16.54551 -16.50390
-15.63568 -15.34683 -15.10367 -14.97720 -14.86024 -14.66407 -14.25874 -13.64462
-13.55910 -13.48567 -13.15384 -12.97991 -12.81508 -12.69999 -12.31893 -12.23987
-12.20413 -11.63662 -11.63001 -11.47684 -11.15052 -11.00704 -10.61797 -10.43426
-10.29347 -9.68724 -9.31400 -8.81806 -8.79242 -8.67460 -8.60112 -8.50198
-6.27734 -4.41497 0.12868 0.73792 1.22132 1.49421 1.65276 1.91614
2.38947 2.92035 3.18790 3.22790 3.39225 3.46131 3.60127 3.73053
4.05555 4.40957 4.52412 4.74188 4.91640 5.03770 5.18859 5.23355
5.37043 5.54979 5.63190 5.69723 5.73380 5.82270 5.95920 6.15998
6.26564 6.32683 6.53089 6.63063 6.91950 7.04447 7.22114 7.32735
7.41786 7.79354 8.02693 8.50413 8.71772 9.32503 10.80904
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.025289 B = 0.002782 C = 0.002580
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1106.914228 B =10063.185739 C =10849.551878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.417 5.417
2 C 0.271 3.729
3 C -0.115 4.115
4 C -0.074 4.074
5 C -0.267 4.267
6 S 0.274 5.726
7 C 0.091 3.909
8 N -0.609 5.609
9 C 0.508 3.492
10 O -0.471 6.471
11 C 0.518 3.482
12 O -0.526 6.526
13 N -0.568 5.568
14 C 0.090 3.910
15 C -0.125 4.125
16 C 0.220 3.780
17 O -0.562 6.562
18 C -0.556 4.556
19 H 0.081 0.919
20 C 0.077 3.923
21 N -0.885 5.885
22 Si 0.946 3.054
23 H -0.290 1.290
24 H -0.324 1.324
25 H -0.266 1.266
26 C 0.089 3.911
27 H 0.150 0.850
28 H 0.174 0.826
29 H 0.432 0.568
30 H 0.091 0.909
31 H 0.074 0.926
32 H 0.088 0.912
33 H 0.087 0.913
34 H 0.373 0.627
35 H 0.268 0.732
36 H 0.084 0.916
37 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.760 14.881 -17.680 23.176
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.094 5.094
2 C -0.045 4.045
3 C -0.135 4.135
4 C -0.104 4.104
5 C -0.403 4.403
6 S 0.535 5.465
7 C -0.130 4.130
8 N -0.254 5.254
9 C 0.290 3.710
10 O -0.344 6.344
11 C 0.299 3.701
12 O -0.404 6.404
13 N -0.300 5.300
14 C -0.031 4.031
15 C -0.163 4.163
16 C 0.180 3.820
17 O -0.370 6.370
18 C -0.593 4.593
19 H 0.099 0.901
20 C -0.129 4.129
21 N -0.520 5.520
22 Si 0.781 3.219
23 H -0.218 1.218
24 H -0.255 1.255
25 H -0.192 1.192
26 C -0.033 4.033
27 H 0.168 0.832
28 H 0.191 0.809
29 H 0.272 0.728
30 H 0.109 0.891
31 H 0.092 0.908
32 H 0.106 0.894
33 H 0.105 0.895
34 H 0.221 0.779
35 H 0.077 0.923
36 H 0.103 0.897
37 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 2.116 14.330 -17.156 22.454
hybrid contribution -1.307 0.829 -0.047 1.548
sum 0.809 15.159 -17.203 22.944
Atomic orbital electron populations
1.81312 1.11559 1.09228 1.07331 1.24904 0.91660 0.93678 0.94224
1.15975 0.85471 1.12870 0.99192 1.20495 0.91860 1.00029 0.98056
1.25800 0.99931 1.09588 1.04961 1.85447 0.95256 1.51184 1.14643
1.22772 1.00525 0.98935 0.90777 1.42556 1.12449 1.51400 1.18966
1.20859 0.86385 0.79446 0.84310 1.90690 1.14255 1.54779 1.74637
1.18885 0.86258 0.81762 0.83226 1.90809 1.13995 1.59392 1.76209
1.48482 1.08557 1.51056 1.21884 1.22871 0.77655 1.00478 1.02139
1.23231 1.00716 0.96449 0.95953 1.20132 0.88057 0.88646 0.85197
1.86145 1.45058 1.65159 1.40618 1.21125 1.21985 0.96973 1.19186
0.90068 1.25107 0.97572 0.95214 0.94981 1.69960 1.38475 1.20951
1.22567 0.85765 0.79808 0.77687 0.78675 1.21766 1.25471 1.19195
1.23219 1.00522 0.95701 0.83818 0.83224 0.80876 0.72792 0.89100
0.90752 0.89370 0.89467 0.77911 0.92257 0.89745 0.91304
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.42 -5.42 18.54 41.84 0.78 -4.64 16
2 C 0.27 2.93 15.02 -22.47 -0.34 2.60 16
3 C -0.11 -1.03 5.88 -105.91 -0.62 -1.65 16
4 C -0.07 -0.49 10.26 -39.09 -0.40 -0.89 16
5 C -0.27 -1.56 11.08 28.82 0.32 -1.24 16
6 S 0.27 2.25 20.31 -107.50 -2.18 0.06 16
7 C 0.09 0.89 7.17 -14.88 -0.11 0.78 16
8 N -0.61 -6.70 5.35 -10.82 -0.06 -6.76 16
9 C 0.51 6.53 7.81 -11.67 -0.09 6.44 16
10 O -0.47 -6.12 11.25 5.46 0.06 -6.05 16
11 C 0.52 8.07 7.91 -11.67 -0.09 7.98 16
12 O -0.53 -9.22 16.80 5.47 0.09 -9.13 16
13 N -0.57 -9.38 3.33 -171.09 -0.57 -9.95 16
14 C 0.09 1.40 6.05 -2.53 -0.02 1.39 16
15 C -0.13 -2.29 5.89 -24.58 -0.14 -2.44 16
16 C 0.22 4.47 0.68 -89.94 -0.06 4.41 16
17 O -0.56 -11.11 8.68 -35.23 -0.31 -11.42 16
18 C -0.56 -13.88 8.82 -34.44 -0.30 -14.19 16
19 H 0.08 2.23 7.80 -52.49 -0.41 1.82 16
20 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16
21 N -0.88 -25.29 13.96 55.43 0.77 -24.51 16
22 Si 0.95 22.01 24.91 -169.99 -4.24 17.78 16
23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
24 H -0.32 -7.82 7.11 56.52 0.40 -7.41 16
25 H -0.27 -5.94 5.18 56.52 0.29 -5.65 16
26 C 0.09 1.63 6.20 -3.06 -0.02 1.61 16
27 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16
28 H 0.17 0.55 8.06 -52.48 -0.42 0.13 16
29 H 0.43 4.63 7.66 -40.82 -0.31 4.32 16
30 H 0.09 1.29 6.15 -51.93 -0.32 0.97 16
31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
32 H 0.09 1.65 6.27 -51.93 -0.33 1.33 16
33 H 0.09 1.59 8.04 -51.93 -0.42 1.17 16
34 H 0.37 6.42 8.97 45.56 0.41 6.83 16
35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16
36 H 0.08 1.65 7.65 -51.93 -0.40 1.25 16
37 H 0.07 1.20 7.97 -51.93 -0.41 0.79 16
LS Contribution 333.84 15.07 5.03 5.03
Total: -1.00 -30.41 333.84 -5.29 -35.70
By element:
Atomic # 1 Polarization: 9.84 SS G_CDS: -2.70 Total: 7.14 kcal
Atomic # 6 Polarization: 8.72 SS G_CDS: -1.97 Total: 6.75 kcal
Atomic # 7 Polarization: -46.78 SS G_CDS: 0.92 Total: -45.86 kcal
Atomic # 8 Polarization: -26.45 SS G_CDS: -0.15 Total: -26.60 kcal
Atomic # 14 Polarization: 22.01 SS G_CDS: -4.24 Total: 17.78 kcal
Atomic # 16 Polarization: 2.25 SS G_CDS: -2.18 Total: 0.06 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -30.41 -5.29 -35.70 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592304274.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.132 kcal
(2) G-P(sol) polarization free energy of solvation -30.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.282 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.290 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.704 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.572 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds