Wall clock time and date at job start Tue Mar 31 2020 18:20:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13599 * 1
3 3 C 1.43205 * 179.97438 * 2 1
4 4 C 1.44354 * 123.51064 * 120.46653 * 3 2 1
5 5 C 1.32506 * 114.30569 * 180.02562 * 4 3 2
6 6 S 1.75537 * 111.00934 * 359.73512 * 5 4 3
7 7 C 1.37295 * 123.50481 * 300.50711 * 3 2 1
8 8 N 1.38500 * 125.13564 * 359.96238 * 7 3 2
9 9 C 1.34773 * 119.99827 * 180.02562 * 8 7 3
10 10 O 1.21391 * 120.00423 * 359.97438 * 9 8 7
11 11 C 1.49273 * 119.99741 * 180.02562 * 9 8 7
12 12 O 1.21375 * 120.00083 * 359.97438 * 11 9 8
13 13 N 1.34774 * 120.00040 * 180.02562 * 11 9 8
14 14 C 1.47427 * 125.64938 * 359.94937 * 13 11 9
15 15 C 1.54903 * 104.83302 * 204.17256 * 14 13 11
16 16 C 1.55162 * 101.58348 * 322.98917 * 15 14 13
17 17 O 1.42902 * 110.72174 * 277.14646 * 16 15 14
18 18 C 1.50693 * 110.87342 * 153.93801 * 16 15 14
19 19 H 1.08001 * 119.99908 * 268.89238 * 18 16 15
20 20 C 1.37874 * 120.00042 * 88.89407 * 18 16 15
21 21 N 1.31520 * 120.00408 * 173.91338 * 20 18 16
22 22 Si 1.86808 * 120.00037 * 353.90935 * 20 18 16
23 23 H 1.48499 * 109.46928 * 86.76593 * 22 20 18
24 24 H 1.48495 * 109.47170 * 206.76895 * 22 20 18
25 25 H 1.48504 * 109.46684 * 326.76890 * 22 20 18
26 26 C 1.47025 * 125.64727 * 180.02562 * 13 11 9
27 27 H 1.08007 * 122.84437 * 0.06900 * 4 3 2
28 28 H 1.08004 * 124.49627 * 179.97438 * 5 4 3
29 29 H 0.96997 * 119.99741 * 0.02562 * 8 7 3
30 30 H 1.09005 * 110.36752 * 323.01106 * 14 13 11
31 31 H 1.09001 * 110.36325 * 85.33158 * 14 13 11
32 32 H 1.09005 * 111.00014 * 204.92163 * 15 14 13
33 33 H 1.09000 * 111.00652 * 81.06476 * 15 14 13
34 34 H 0.96691 * 114.00094 * 169.76277 * 17 16 15
35 35 H 0.96997 * 119.99855 * 179.97438 * 21 20 18
36 36 H 1.09001 * 109.88215 * 59.48368 * 26 13 11
37 37 H 1.08994 * 109.87963 * 298.31335 * 26 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.3647 0.6113 -1.0374
5 6 4.6728 0.5039 -0.8550
6 16 5.0323 -0.3611 0.6296
7 6 3.3262 -0.5802 0.9863
8 7 2.8220 -1.2346 2.0980
9 6 3.6639 -1.7682 3.0052
10 8 4.8640 -1.6757 2.8477
11 6 3.1205 -2.4740 4.2030
12 8 1.9205 -2.5668 4.3603
13 7 3.9623 -3.0072 5.1105
14 6 5.4345 -2.9676 5.0442
15 6 5.9023 -4.1769 5.8916
16 6 4.8589 -4.1748 7.0401
17 8 5.2280 -3.2410 8.0568
18 6 4.6967 -5.5559 7.6207
19 1 3.9469 -6.2241 7.2235
20 6 5.5055 -5.9665 8.6590
21 7 5.2868 -7.1234 9.2452
22 14 6.9123 -4.8798 9.2333
23 1 6.4109 -3.9139 10.2436
24 1 7.9739 -5.7232 9.8389
25 1 7.4701 -4.1384 8.0738
26 6 3.5644 -3.7260 6.3298
27 1 2.9313 1.1137 -1.8896
28 1 5.4188 0.8997 -1.5282
29 1 1.8631 -1.3088 2.2236
30 1 5.7708 -3.0743 4.0128
31 1 5.8086 -2.0373 5.4717
32 1 6.9089 -4.0171 6.2781
33 1 5.8484 -5.1013 5.3165
34 1 4.5387 -3.0852 8.7167
35 1 5.8561 -7.4124 9.9755
36 1 2.9642 -4.5972 6.0673
37 1 2.9949 -3.0635 6.9815
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592304274.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:20:49
Heat of formation + Delta-G solvation = -55.913504 kcal
Electronic energy + Delta-G solvation = -25724.651483 eV
Core-core repulsion = 21786.859840 eV
Total energy + Delta-G solvation = -3937.791644 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 335.077 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.37822 -40.66295 -39.31789 -39.13588 -37.15476 -36.65016 -35.78165 -34.45722
-32.09785 -30.46886 -30.10396 -28.04268 -26.45863 -24.93857 -23.64838 -22.48748
-21.65446 -21.27411 -20.13408 -19.53583 -19.14414 -18.15223 -17.64341 -17.40781
-17.02641 -16.68427 -16.56617 -16.24134 -15.89411 -15.32804 -15.21740 -15.14348
-14.77823 -14.59145 -14.35068 -14.29460 -14.00483 -13.80918 -13.67378 -13.51089
-13.28329 -13.01340 -12.95246 -12.66579 -12.34382 -12.23498 -12.17135 -11.91389
-11.73414 -11.21701 -10.81798 -10.63844 -10.42204 -9.92898 -9.43996 -9.27375
-8.33382 -6.48687 -0.68134 0.08410 0.24477 0.69175 1.06686 1.10622
1.54213 1.56413 1.56953 1.75432 1.79162 2.12271 2.38930 2.46616
2.87878 2.97972 3.01137 3.48963 3.75920 3.85362 3.97061 4.18149
4.28096 4.35935 4.53058 4.67350 4.74976 4.81722 4.89784 5.04724
5.15451 5.18342 5.21548 5.32934 5.43473 5.51233 6.02160 6.05443
6.18150 6.38806 6.54358 6.59044 6.94732 7.30315 8.79439
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.025289 B = 0.002782 C = 0.002580
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1106.914228 B =10063.185739 C =10849.551878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.461 5.461
2 C 0.290 3.710
3 C -0.109 4.109
4 C -0.080 4.080
5 C -0.240 4.240
6 S 0.270 5.730
7 C 0.066 3.934
8 N -0.603 5.603
9 C 0.517 3.483
10 O -0.472 6.472
11 C 0.518 3.482
12 O -0.549 6.549
13 N -0.573 5.573
14 C 0.103 3.897
15 C -0.125 4.125
16 C 0.219 3.781
17 O -0.560 6.560
18 C -0.550 4.550
19 H 0.042 0.958
20 C 0.027 3.973
21 N -0.937 5.937
22 Si 1.004 2.996
23 H -0.282 1.282
24 H -0.338 1.338
25 H -0.247 1.247
26 C 0.097 3.903
27 H 0.175 0.825
28 H 0.208 0.792
29 H 0.431 0.569
30 H 0.110 0.890
31 H 0.086 0.914
32 H 0.089 0.911
33 H 0.081 0.919
34 H 0.384 0.616
35 H 0.267 0.733
36 H 0.064 0.936
37 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.462 17.814 -19.963 26.979
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.138 5.138
2 C -0.025 4.025
3 C -0.131 4.131
4 C -0.109 4.109
5 C -0.376 4.376
6 S 0.531 5.469
7 C -0.154 4.154
8 N -0.248 5.248
9 C 0.299 3.701
10 O -0.345 6.345
11 C 0.301 3.699
12 O -0.428 6.428
13 N -0.305 5.305
14 C -0.018 4.018
15 C -0.163 4.163
16 C 0.179 3.821
17 O -0.369 6.369
18 C -0.588 4.588
19 H 0.060 0.940
20 C -0.174 4.174
21 N -0.575 5.575
22 Si 0.837 3.163
23 H -0.209 1.209
24 H -0.270 1.270
25 H -0.171 1.171
26 C -0.025 4.025
27 H 0.192 0.808
28 H 0.225 0.775
29 H 0.271 0.729
30 H 0.128 0.872
31 H 0.104 0.896
32 H 0.108 0.892
33 H 0.100 0.900
34 H 0.234 0.766
35 H 0.076 0.924
36 H 0.082 0.918
37 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 3.813 17.306 -19.484 26.337
hybrid contribution -1.909 -0.066 0.531 1.982
sum 1.904 17.240 -18.954 25.692
Atomic orbital electron populations
1.81329 1.12906 1.10762 1.08829 1.25181 0.91960 0.92467 0.92939
1.16239 0.84506 1.12640 0.99713 1.20735 0.91860 1.00177 0.98144
1.26121 1.00276 1.07536 1.03630 1.85483 0.94150 1.51263 1.16037
1.22954 1.01558 1.00157 0.90703 1.42359 1.12127 1.51172 1.19098
1.20077 0.86409 0.79796 0.83826 1.90691 1.13974 1.55150 1.74702
1.19340 0.85809 0.81171 0.83628 1.90796 1.15107 1.60109 1.76834
1.48435 1.09139 1.51333 1.21604 1.22835 0.76761 0.99453 1.02715
1.23140 1.00004 0.97755 0.95399 1.19948 0.90045 0.86346 0.85786
1.86093 1.45716 1.64268 1.40843 1.21365 1.20087 0.98818 1.18481
0.93990 1.25887 0.99916 0.96180 0.95368 1.70091 1.40138 1.23277
1.23982 0.84817 0.76737 0.75964 0.78820 1.20906 1.27018 1.17146
1.22848 0.99220 0.95529 0.84920 0.80769 0.77537 0.72903 0.87222
0.89555 0.89223 0.90011 0.76620 0.92386 0.91764 0.90460
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.46 -11.74 18.54 19.01 0.35 -11.39 16
2 C 0.29 5.90 15.02 88.33 1.33 7.23 16
3 C -0.11 -1.70 5.88 -20.70 -0.12 -1.83 16
4 C -0.08 -0.75 10.26 22.69 0.23 -0.51 16
5 C -0.24 -1.75 11.08 66.68 0.74 -1.01 16
6 S 0.27 3.58 20.31 -56.49 -1.15 2.44 16
7 C 0.07 1.15 7.17 83.42 0.60 1.74 16
8 N -0.60 -12.45 5.35 -306.50 -1.64 -14.09 16
9 C 0.52 12.46 7.81 87.22 0.68 13.14 16
10 O -0.47 -11.08 11.25 -3.37 -0.04 -11.12 16
11 C 0.52 15.62 7.91 87.21 0.69 16.31 16
12 O -0.55 -19.11 16.80 -3.33 -0.06 -19.17 16
13 N -0.57 -18.19 3.33 -813.56 -2.71 -20.90 16
14 C 0.10 2.96 6.05 86.85 0.53 3.49 16
15 C -0.12 -4.36 5.89 31.99 0.19 -4.18 16
16 C 0.22 8.76 0.68 -10.35 -0.01 8.76 16
17 O -0.56 -20.98 8.68 -148.98 -1.29 -22.27 16
18 C -0.55 -28.12 8.82 25.60 0.23 -27.89 16
19 H 0.04 2.43 7.80 -2.91 -0.02 2.40 16
20 C 0.03 1.43 5.46 84.65 0.46 1.89 16
21 N -0.94 -55.40 13.96 21.45 0.30 -55.10 16
22 Si 1.00 45.02 24.91 68.60 1.71 46.73 16
23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16
24 H -0.34 -15.88 7.11 99.48 0.71 -15.17 16
25 H -0.25 -10.17 5.18 99.48 0.52 -9.66 16
26 C 0.10 3.54 6.20 86.73 0.54 4.08 16
27 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16
28 H 0.21 0.15 8.06 -2.91 -0.02 0.13 16
29 H 0.43 8.97 7.66 -92.71 -0.71 8.26 16
30 H 0.11 2.79 6.15 -2.38 -0.01 2.77 16
31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16
32 H 0.09 3.12 6.27 -2.38 -0.01 3.11 16
33 H 0.08 2.92 8.04 -2.39 -0.02 2.91 16
34 H 0.38 12.50 8.97 -74.06 -0.66 11.84 16
35 H 0.27 14.97 8.31 -92.71 -0.77 14.19 16
36 H 0.06 2.59 7.65 -2.39 -0.02 2.57 16
37 H 0.08 2.66 7.97 -2.39 -0.02 2.64 16
Total: -1.00 -67.24 333.84 1.17 -66.07
By element:
Atomic # 1 Polarization: 17.98 SS G_CDS: -0.39 Total: 17.59 kcal
Atomic # 6 Polarization: 15.14 SS G_CDS: 6.08 Total: 21.22 kcal
Atomic # 7 Polarization: -97.78 SS G_CDS: -3.70 Total: -101.48 kcal
Atomic # 8 Polarization: -51.18 SS G_CDS: -1.39 Total: -52.57 kcal
Atomic # 14 Polarization: 45.02 SS G_CDS: 1.71 Total: 46.73 kcal
Atomic # 16 Polarization: 3.58 SS G_CDS: -1.15 Total: 2.44 kcal
Total: -67.24 1.17 -66.07 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592304274.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.156 kcal
(2) G-P(sol) polarization free energy of solvation -67.235 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.079 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.069 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.914 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds