Wall clock time and date at job start Tue Mar 31 2020 18:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00148 * 2 1 4 4 H 1.48504 * 109.47021 * 270.00323 * 3 2 1 5 5 H 1.48503 * 109.46972 * 29.99657 * 3 2 1 6 6 H 1.48496 * 109.47302 * 150.00081 * 3 2 1 7 7 C 1.37873 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99972 * 186.17258 * 7 2 1 9 9 C 1.50697 * 120.00139 * 6.45083 * 7 2 1 10 10 C 1.52999 * 115.54785 * 274.91204 * 9 7 2 11 11 S 1.81400 * 109.47400 * 294.67668 * 10 9 7 12 12 O 1.42101 * 110.54255 * 292.57482 * 11 10 9 13 13 O 1.42100 * 110.54089 * 69.32564 * 11 10 9 14 14 N 1.65598 * 104.45118 * 180.95144 * 11 10 9 15 15 C 1.46505 * 120.00215 * 64.99950 * 14 11 10 16 16 H 1.08999 * 109.46727 * 335.00392 * 15 14 11 17 17 C 1.52998 * 109.47258 * 215.00056 * 15 14 11 18 18 C 1.53001 * 109.47044 * 64.99459 * 17 15 14 19 19 C 1.50694 * 109.46925 * 179.97438 * 18 17 15 20 20 O 1.20830 * 120.00444 * 0.02562 * 19 18 17 21 21 O 1.34236 * 119.99956 * 180.02562 * 19 18 17 22 22 C 1.50695 * 109.47029 * 94.99774 * 15 14 11 23 23 O 1.20825 * 120.00340 * 0.02562 * 22 15 14 24 24 O 1.34232 * 119.99964 * 180.02562 * 22 15 14 25 25 C 1.53002 * 117.50256 * 129.24318 * 9 7 2 26 26 C 1.53002 * 117.50149 * 60.57923 * 9 7 2 27 27 H 0.97005 * 119.99500 * 5.09144 * 1 2 3 28 28 H 1.09004 * 109.47262 * 54.67484 * 10 9 7 29 29 H 1.09003 * 109.47467 * 174.67307 * 10 9 7 30 30 H 0.97003 * 119.99898 * 244.99822 * 14 11 10 31 31 H 1.08992 * 109.46879 * 184.99746 * 17 15 14 32 32 H 1.09002 * 109.47143 * 305.00150 * 17 15 14 33 33 H 1.08994 * 109.47635 * 300.00667 * 18 17 15 34 34 H 1.09002 * 109.46586 * 60.00350 * 18 17 15 35 35 H 0.96701 * 116.99906 * 180.02562 * 21 19 18 36 36 H 0.96702 * 116.99880 * 180.02562 * 24 22 15 37 37 H 1.09000 * 117.49849 * 359.97438 * 25 9 7 38 38 H 1.09004 * 117.49909 * 145.01957 * 25 9 7 39 39 H 1.08995 * 117.50130 * 214.98026 * 26 9 7 40 40 H 1.08996 * 117.49590 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0799 -1.1967 0.1011 9 6 1.2582 -2.4950 -0.1455 10 6 0.6955 -3.0821 1.1505 11 16 2.0633 -3.5458 2.2482 12 8 2.7950 -4.6339 1.7007 13 8 2.7271 -2.3873 2.7344 14 7 1.3224 -4.1833 3.5850 15 6 0.5469 -5.4212 3.4723 16 1 0.1943 -5.5369 2.4475 17 6 -0.6522 -5.3598 4.4205 18 6 -1.6004 -4.2458 3.9723 19 6 -2.7818 -4.1859 4.9058 20 8 -2.8575 -4.9548 5.8348 21 8 -3.7502 -3.2781 4.7055 22 6 1.4180 -6.5948 3.8393 23 8 2.5685 -6.4157 4.1623 24 8 0.9159 -7.8392 3.8074 25 6 1.7517 -3.4770 -1.2100 26 6 0.4478 -2.7048 -1.4262 27 1 -0.4850 0.8368 -0.0746 28 1 0.0694 -2.3388 1.6443 29 1 0.0988 -3.9648 0.9207 30 1 1.4019 -3.7371 4.4426 31 1 -1.1786 -6.3141 4.4028 32 1 -0.3046 -5.1553 5.4332 33 1 -1.0740 -3.2916 3.9899 34 1 -1.9480 -4.4503 2.9596 35 1 -4.4878 -3.2778 5.3308 36 1 1.5128 -8.5599 4.0514 37 1 2.6159 -3.1819 -1.8050 38 1 1.6751 -4.5413 -0.9871 39 1 -0.4859 -3.2613 -1.3456 40 1 0.4541 -1.9015 -2.1630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593254644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:30 Heat of formation + Delta-G solvation = -234.307216 kcal Electronic energy + Delta-G solvation = -28218.647463 eV Core-core repulsion = 23933.518417 eV Total energy + Delta-G solvation = -4285.129046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.101 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.63888 -40.21068 -36.95040 -36.83022 -36.37644 -36.21277 -35.86916 -35.16552 -32.23982 -32.07958 -28.42395 -28.28125 -25.50754 -24.35677 -21.57829 -21.27736 -21.05024 -19.93673 -18.88368 -18.43570 -18.07139 -17.28413 -17.16373 -16.66897 -16.41367 -16.27856 -15.67269 -15.42727 -15.04486 -14.76402 -14.46382 -14.02990 -13.85657 -13.69261 -13.22777 -13.01175 -12.73514 -12.23571 -12.04694 -11.88987 -11.74083 -11.59919 -11.44143 -11.35775 -11.28192 -11.22276 -11.09371 -10.94099 -10.89670 -10.77130 -10.63898 -10.51707 -10.18341 -9.85455 -9.57648 -9.01449 -8.59598 -8.18606 -6.18980 -4.28837 0.87669 1.98753 2.12802 2.69989 2.91697 3.25923 3.27866 3.34744 3.43157 4.30990 4.35368 4.37346 4.49634 4.55944 4.82270 4.88162 5.07832 5.10755 5.12936 5.16874 5.31136 5.39915 5.55814 5.71492 5.74278 5.90868 6.15515 6.28135 6.29071 6.43469 6.51394 6.65264 6.90994 6.98253 7.15628 7.33411 7.67242 7.77090 7.84441 8.14104 8.77920 9.43218 10.89231 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.004731 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.899489 B = 5916.525278 C = 7264.013847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.081 3.919 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.511 4.511 8 H 0.069 0.931 9 C 0.042 3.958 10 C -0.555 4.555 11 S 2.597 3.403 12 O -0.963 6.963 13 O -0.937 6.937 14 N -1.111 6.111 15 C 0.171 3.829 16 H 0.125 0.875 17 C -0.109 4.109 18 C -0.123 4.123 19 C 0.484 3.516 20 O -0.520 6.520 21 O -0.513 6.513 22 C 0.462 3.538 23 O -0.487 6.487 24 O -0.518 6.518 25 C -0.211 4.211 26 C -0.137 4.137 27 H 0.263 0.737 28 H 0.139 0.861 29 H 0.098 0.902 30 H 0.419 0.581 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.410 0.590 36 H 0.410 0.590 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 -11.009 7.568 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.123 4.123 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.548 4.548 8 H 0.087 0.913 9 C 0.039 3.961 10 C -0.688 4.688 11 S 2.694 3.306 12 O -0.953 6.953 13 O -0.928 6.928 14 N -0.867 5.867 15 C 0.060 3.940 16 H 0.143 0.857 17 C -0.148 4.148 18 C -0.160 4.160 19 C 0.327 3.673 20 O -0.409 6.409 21 O -0.324 6.324 22 C 0.300 3.700 23 O -0.371 6.371 24 O -0.330 6.330 25 C -0.248 4.248 26 C -0.177 4.177 27 H 0.073 0.927 28 H 0.157 0.843 29 H 0.116 0.884 30 H 0.253 0.747 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.269 0.731 36 H 0.269 0.731 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.758 -10.737 7.357 14.666 hybrid contribution -0.425 0.659 0.768 1.098 sum -7.183 -10.078 8.125 14.804 Atomic orbital electron populations 1.69996 1.05938 1.27305 1.47750 1.24921 0.94811 0.99186 0.93423 0.86608 0.80632 0.82902 0.78263 1.20463 1.21008 1.19108 1.20547 0.93374 0.88549 1.52380 0.91289 1.18285 0.99409 0.94418 0.83981 1.30064 1.16636 1.08561 1.13550 1.05643 0.76853 0.73951 0.74128 1.93536 1.68618 1.54301 1.78880 1.93581 1.71274 1.49792 1.78108 1.56193 1.70028 1.32241 1.28217 1.20094 0.89574 0.81542 1.02835 0.85727 1.21680 0.93384 1.00278 0.99495 1.21440 0.92055 1.02963 0.99581 1.23385 0.83210 0.76596 0.84103 1.90731 1.77822 1.40701 1.31651 1.84587 1.33999 1.55968 1.57863 1.23910 0.87541 0.84120 0.74411 1.90751 1.18594 1.85570 1.42223 1.84501 1.48918 1.17376 1.82167 1.23240 0.99125 0.95998 1.06457 1.22547 0.92231 1.00988 1.01903 0.92747 0.84299 0.88387 0.74687 0.87993 0.89309 0.86320 0.86448 0.73138 0.73131 0.89449 0.90636 0.91435 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.91 12.93 55.43 0.72 -22.20 16 2 C 0.08 2.14 5.39 -17.82 -0.10 2.04 16 3 Si 0.89 20.84 29.55 -169.99 -5.02 15.82 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.45 7.96 -34.44 -0.27 -13.72 16 8 H 0.07 1.88 7.82 -52.48 -0.41 1.47 16 9 C 0.04 0.95 1.33 -155.66 -0.21 0.74 16 10 C -0.55 -10.33 5.82 37.16 0.22 -10.12 16 11 S 2.60 49.55 5.18 -107.50 -0.56 48.99 16 12 O -0.96 -20.64 17.77 -57.54 -1.02 -21.66 16 13 O -0.94 -21.68 17.47 -57.54 -1.01 -22.69 16 14 N -1.11 -15.22 4.30 -5.88 -0.03 -15.24 16 15 C 0.17 1.90 2.58 -69.08 -0.18 1.72 16 16 H 0.13 1.14 7.13 -51.93 -0.37 0.77 16 17 C -0.11 -0.95 4.07 -26.73 -0.11 -1.06 16 18 C -0.12 -1.04 5.70 -27.89 -0.16 -1.20 16 19 C 0.48 4.68 8.33 36.00 0.30 4.98 16 20 O -0.52 -6.33 16.74 -18.75 -0.31 -6.65 16 21 O -0.51 -4.29 13.42 -39.27 -0.53 -4.82 16 22 C 0.46 5.94 7.65 36.00 0.28 6.22 16 23 O -0.49 -8.22 17.19 -18.75 -0.32 -8.54 16 24 O -0.52 -4.82 13.23 -39.26 -0.52 -5.34 16 25 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 26 C -0.14 -2.92 9.44 -26.69 -0.25 -3.17 16 27 H 0.26 6.60 8.32 -40.82 -0.34 6.27 16 28 H 0.14 2.61 8.14 -51.92 -0.42 2.19 16 29 H 0.10 1.41 7.37 -51.92 -0.38 1.03 16 30 H 0.42 4.98 8.80 -34.47 -0.30 4.68 16 31 H 0.10 0.80 7.95 -51.93 -0.41 0.39 16 32 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.12 1.00 7.75 -51.93 -0.40 0.60 16 34 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.41 1.70 9.10 45.56 0.41 2.11 16 36 H 0.41 2.24 9.10 45.56 0.41 2.65 16 37 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -38.09 367.63 -7.35 -45.45 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -3.54 Total: 9.54 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -0.75 Total: -18.20 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.69 Total: -37.44 kcal Atomic # 8 Polarization: -65.99 SS G_CDS: -3.71 Total: -69.70 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 49.55 SS G_CDS: -0.56 Total: 48.99 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.09 -7.35 -45.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593254644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.861 kcal (2) G-P(sol) polarization free energy of solvation -38.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds