Wall clock time and date at job start Tue Mar 31 2020 18:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00148 * 2 1 4 4 H 1.48504 * 109.47021 * 270.00323 * 3 2 1 5 5 H 1.48503 * 109.46972 * 29.99657 * 3 2 1 6 6 H 1.48496 * 109.47302 * 150.00081 * 3 2 1 7 7 C 1.37873 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99972 * 186.17258 * 7 2 1 9 9 C 1.50697 * 120.00139 * 6.45083 * 7 2 1 10 10 C 1.52999 * 115.54785 * 274.91204 * 9 7 2 11 11 S 1.81400 * 109.47400 * 294.67668 * 10 9 7 12 12 O 1.42101 * 110.54255 * 292.57482 * 11 10 9 13 13 O 1.42100 * 110.54089 * 69.32564 * 11 10 9 14 14 N 1.65598 * 104.45118 * 180.95144 * 11 10 9 15 15 C 1.46505 * 120.00215 * 64.99950 * 14 11 10 16 16 H 1.08999 * 109.46727 * 335.00392 * 15 14 11 17 17 C 1.52998 * 109.47258 * 215.00056 * 15 14 11 18 18 C 1.53001 * 109.47044 * 64.99459 * 17 15 14 19 19 C 1.50694 * 109.46925 * 179.97438 * 18 17 15 20 20 O 1.20830 * 120.00444 * 0.02562 * 19 18 17 21 21 O 1.34236 * 119.99956 * 180.02562 * 19 18 17 22 22 C 1.50695 * 109.47029 * 94.99774 * 15 14 11 23 23 O 1.20825 * 120.00340 * 0.02562 * 22 15 14 24 24 O 1.34232 * 119.99964 * 180.02562 * 22 15 14 25 25 C 1.53002 * 117.50256 * 129.24318 * 9 7 2 26 26 C 1.53002 * 117.50149 * 60.57923 * 9 7 2 27 27 H 0.97005 * 119.99500 * 5.09144 * 1 2 3 28 28 H 1.09004 * 109.47262 * 54.67484 * 10 9 7 29 29 H 1.09003 * 109.47467 * 174.67307 * 10 9 7 30 30 H 0.97003 * 119.99898 * 244.99822 * 14 11 10 31 31 H 1.08992 * 109.46879 * 184.99746 * 17 15 14 32 32 H 1.09002 * 109.47143 * 305.00150 * 17 15 14 33 33 H 1.08994 * 109.47635 * 300.00667 * 18 17 15 34 34 H 1.09002 * 109.46586 * 60.00350 * 18 17 15 35 35 H 0.96701 * 116.99906 * 180.02562 * 21 19 18 36 36 H 0.96702 * 116.99880 * 180.02562 * 24 22 15 37 37 H 1.09000 * 117.49849 * 359.97438 * 25 9 7 38 38 H 1.09004 * 117.49909 * 145.01957 * 25 9 7 39 39 H 1.08995 * 117.50130 * 214.98026 * 26 9 7 40 40 H 1.08996 * 117.49590 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0799 -1.1967 0.1011 9 6 1.2582 -2.4950 -0.1455 10 6 0.6955 -3.0821 1.1505 11 16 2.0633 -3.5458 2.2482 12 8 2.7950 -4.6339 1.7007 13 8 2.7271 -2.3873 2.7344 14 7 1.3224 -4.1833 3.5850 15 6 0.5469 -5.4212 3.4723 16 1 0.1943 -5.5369 2.4475 17 6 -0.6522 -5.3598 4.4205 18 6 -1.6004 -4.2458 3.9723 19 6 -2.7818 -4.1859 4.9058 20 8 -2.8575 -4.9548 5.8348 21 8 -3.7502 -3.2781 4.7055 22 6 1.4180 -6.5948 3.8393 23 8 2.5685 -6.4157 4.1623 24 8 0.9159 -7.8392 3.8074 25 6 1.7517 -3.4770 -1.2100 26 6 0.4478 -2.7048 -1.4262 27 1 -0.4850 0.8368 -0.0746 28 1 0.0694 -2.3388 1.6443 29 1 0.0988 -3.9648 0.9207 30 1 1.4019 -3.7371 4.4426 31 1 -1.1786 -6.3141 4.4028 32 1 -0.3046 -5.1553 5.4332 33 1 -1.0740 -3.2916 3.9899 34 1 -1.9480 -4.4503 2.9596 35 1 -4.4878 -3.2778 5.3308 36 1 1.5128 -8.5599 4.0514 37 1 2.6159 -3.1819 -1.8050 38 1 1.6751 -4.5413 -0.9871 39 1 -0.4859 -3.2613 -1.3456 40 1 0.4541 -1.9015 -2.1630 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593254644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:29 Heat of formation + Delta-G solvation = -265.929249 kcal Electronic energy + Delta-G solvation = -28220.018698 eV Core-core repulsion = 23933.518417 eV Total energy + Delta-G solvation = -4286.500281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.101 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.49408 -41.03573 -38.52408 -38.01418 -37.65527 -37.10151 -36.79344 -36.76143 -34.02822 -33.11320 -29.85308 -29.27111 -27.43755 -25.13801 -22.92835 -22.45842 -21.82504 -21.48651 -20.34003 -19.24347 -18.97628 -18.49291 -18.39947 -18.01383 -17.54334 -17.06539 -16.81337 -16.65209 -16.51624 -16.36477 -15.82754 -15.54969 -14.94998 -14.75118 -14.44568 -13.86615 -13.70402 -13.65099 -13.49745 -13.16238 -13.09067 -12.90807 -12.88121 -12.80675 -12.60967 -12.46239 -12.44818 -12.37455 -12.15516 -12.04262 -11.94863 -11.84191 -11.56910 -11.49328 -10.86035 -10.72975 -10.49040 -9.86016 -8.16302 -6.28295 -0.58412 1.17839 1.28577 1.39628 1.43443 1.53399 1.78899 2.04336 2.33059 2.43893 2.99090 3.12011 3.39395 3.49176 3.56481 3.65123 3.86263 4.02107 4.10885 4.28074 4.36178 4.50018 4.55634 4.59697 4.67375 4.75582 4.89393 4.99702 5.04712 5.10188 5.29654 5.52406 5.64421 5.66681 5.70663 5.77102 5.95060 6.27501 6.77050 7.00812 7.07160 7.43855 8.90912 Molecular weight = 335.10amu Principal moments of inertia in cm(-1) A = 0.011039 B = 0.004731 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.899489 B = 5916.525278 C = 7264.013847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.048 3.952 3 Si 0.925 3.075 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.042 0.958 9 C 0.008 3.992 10 C -0.545 4.545 11 S 2.609 3.391 12 O -0.992 6.992 13 O -0.990 6.990 14 N -1.099 6.099 15 C 0.162 3.838 16 H 0.153 0.847 17 C -0.098 4.098 18 C -0.128 4.128 19 C 0.489 3.511 20 O -0.551 6.551 21 O -0.516 6.516 22 C 0.464 3.536 23 O -0.537 6.537 24 O -0.503 6.503 25 C -0.203 4.203 26 C -0.130 4.130 27 H 0.265 0.735 28 H 0.139 0.861 29 H 0.148 0.852 30 H 0.427 0.573 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.142 0.858 35 H 0.427 0.573 36 H 0.428 0.572 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.002 -12.286 7.424 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.155 4.155 3 Si 0.751 3.249 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.060 0.940 9 C 0.006 3.994 10 C -0.679 4.679 11 S 2.707 3.293 12 O -0.981 6.981 13 O -0.980 6.980 14 N -0.859 5.859 15 C 0.052 3.948 16 H 0.170 0.830 17 C -0.137 4.137 18 C -0.165 4.165 19 C 0.334 3.666 20 O -0.442 6.442 21 O -0.330 6.330 22 C 0.305 3.695 23 O -0.425 6.425 24 O -0.316 6.316 25 C -0.241 4.241 26 C -0.169 4.169 27 H 0.074 0.926 28 H 0.157 0.843 29 H 0.166 0.834 30 H 0.263 0.737 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.288 0.712 36 H 0.289 0.711 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.860 -12.024 7.213 16.586 hybrid contribution 0.180 0.972 0.825 1.288 sum -8.680 -11.052 8.038 16.189 Atomic orbital electron populations 1.70005 1.06092 1.27752 1.48260 1.25358 0.95585 1.00939 0.93659 0.86054 0.79276 0.81062 0.78459 1.19631 1.20052 1.20642 1.20684 0.92570 0.90916 1.52526 0.93977 1.18405 1.00759 0.94047 0.86230 1.29871 1.16339 1.10465 1.11226 1.04954 0.76963 0.72771 0.74574 1.93495 1.70008 1.54782 1.79864 1.93508 1.73295 1.51981 1.79263 1.55628 1.69960 1.33232 1.27043 1.20516 0.89505 0.79635 1.05117 0.82990 1.21599 0.92292 1.01235 0.98572 1.21549 0.91586 1.02796 1.00583 1.23549 0.83437 0.76055 0.83605 1.90725 1.78563 1.41962 1.32943 1.84553 1.34507 1.55395 1.58503 1.24210 0.86892 0.85317 0.73130 1.90748 1.20685 1.86378 1.44717 1.84457 1.48953 1.16850 1.81372 1.23291 0.98626 0.97082 1.05072 1.22524 0.93625 1.00608 1.00168 0.92553 0.84257 0.83384 0.73686 0.86551 0.89695 0.86287 0.84040 0.71188 0.71054 0.90523 0.87948 0.88418 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.63 12.93 21.45 0.28 -45.35 16 2 C 0.05 2.51 5.39 84.65 0.46 2.96 16 3 Si 0.93 42.87 29.55 68.60 2.03 44.90 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.53 -28.11 7.96 25.60 0.20 -27.91 16 8 H 0.04 2.39 7.82 -2.91 -0.02 2.37 16 9 C 0.01 0.35 1.33 -52.93 -0.07 0.28 16 10 C -0.55 -18.92 5.82 71.98 0.42 -18.50 16 11 S 2.61 97.41 5.18 -56.49 -0.29 97.12 16 12 O -0.99 -41.70 17.77 -127.65 -2.27 -43.96 16 13 O -0.99 -46.78 17.47 -127.65 -2.23 -49.01 16 14 N -1.10 -28.42 4.30 -172.52 -0.74 -29.16 16 15 C 0.16 3.14 2.58 44.24 0.11 3.26 16 16 H 0.15 2.10 7.13 -2.39 -0.02 2.08 16 17 C -0.10 -1.41 4.07 30.59 0.12 -1.29 16 18 C -0.13 -1.74 5.70 29.85 0.17 -1.57 16 19 C 0.49 8.26 8.33 71.23 0.59 8.85 16 20 O -0.55 -12.36 16.74 21.95 0.37 -12.00 16 21 O -0.52 -7.38 13.42 -51.47 -0.69 -8.07 16 22 C 0.46 10.97 7.65 71.23 0.55 11.51 16 23 O -0.54 -17.75 17.19 21.97 0.38 -17.38 16 24 O -0.50 -7.91 13.23 -51.44 -0.68 -8.59 16 25 C -0.20 -8.06 9.96 30.62 0.30 -7.75 16 26 C -0.13 -5.25 9.44 30.62 0.29 -4.96 16 27 H 0.27 13.07 8.32 -92.70 -0.77 12.30 16 28 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 29 H 0.15 3.53 7.37 -2.39 -0.02 3.51 16 30 H 0.43 9.80 8.80 -96.74 -0.85 8.95 16 31 H 0.12 1.41 7.95 -2.39 -0.02 1.39 16 32 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 33 H 0.12 1.67 7.75 -2.39 -0.02 1.65 16 34 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.43 2.62 9.10 -74.06 -0.67 1.95 16 36 H 0.43 3.58 9.10 -74.06 -0.67 2.91 16 37 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.10 3.48 8.14 -2.38 -0.02 3.46 16 39 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -83.40 367.63 -1.79 -85.18 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -1.08 Total: 21.45 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 3.15 Total: -35.11 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -0.46 Total: -74.52 kcal Atomic # 8 Polarization: -133.89 SS G_CDS: -5.13 Total: -139.01 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 97.41 SS G_CDS: -0.29 Total: 97.12 kcal Total: -83.40 -1.79 -85.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593254644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.745 kcal (2) G-P(sol) polarization free energy of solvation -83.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds