Wall clock time and date at job start Tue Mar 31 2020 19:14:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86807 * 119.99905 * 2 1
4 4 H 1.48497 * 109.47152 * 269.99691 * 3 2 1
5 5 H 1.48501 * 109.47179 * 29.99820 * 3 2 1
6 6 H 1.48499 * 109.46757 * 149.99900 * 3 2 1
7 7 C 1.37876 * 120.00235 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99522 * 0.02562 * 7 2 1
9 9 C 1.50694 * 120.00061 * 179.97438 * 7 2 1
10 10 C 1.53006 * 109.46966 * 180.02562 * 9 7 2
11 11 S 1.81405 * 109.47005 * 180.02562 * 10 9 7
12 12 O 1.42098 * 110.54134 * 68.37639 * 11 10 9
13 13 O 1.42104 * 110.53896 * 291.62504 * 11 10 9
14 14 N 1.65604 * 104.44634 * 180.02562 * 11 10 9
15 15 C 1.46498 * 120.00000 * 64.99891 * 14 11 10
16 16 H 1.08992 * 109.47437 * 352.31157 * 15 14 11
17 17 C 1.52996 * 109.46944 * 112.31478 * 15 14 11
18 18 O 1.42900 * 109.47440 * 64.99970 * 17 15 14
19 19 C 1.50699 * 109.46881 * 232.31168 * 15 14 11
20 20 C 1.38236 * 119.98975 * 341.54434 * 19 15 14
21 21 C 1.38183 * 120.05120 * 180.02562 * 20 19 15
22 22 C 1.38493 * 120.02377 * 0.02562 * 21 20 19
23 23 F 1.35107 * 120.01191 * 180.02562 * 22 21 20
24 24 C 1.38402 * 119.97852 * 359.97438 * 22 21 20
25 25 C 1.38440 * 119.94526 * 359.97438 * 24 22 21
26 26 F 1.35095 * 120.00827 * 179.97438 * 25 24 22
27 27 H 0.97005 * 119.99762 * 0.02562 * 1 2 3
28 28 H 1.09005 * 109.47202 * 60.00590 * 9 7 2
29 29 H 1.08996 * 109.47444 * 300.00114 * 9 7 2
30 30 H 1.08998 * 109.47151 * 60.00027 * 10 9 7
31 31 H 1.08996 * 109.47018 * 300.00235 * 10 9 7
32 32 H 0.97000 * 119.99566 * 244.99514 * 14 11 10
33 33 H 1.09003 * 109.47102 * 184.99832 * 17 15 14
34 34 H 1.09000 * 109.47217 * 304.99927 * 17 15 14
35 35 H 0.96693 * 114.00575 * 180.02562 * 18 17 15
36 36 H 1.07999 * 119.97327 * 0.02562 * 20 19 15
37 37 H 1.08002 * 119.98562 * 180.02562 * 21 20 19
38 38 H 1.08001 * 120.02546 * 179.72603 * 24 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4968 2.0465 -1.4000
5 1 1.4466 2.6528 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 1.4646 -2.1293 0.0005
9 6 3.5116 -1.1940 0.0000
10 6 4.0216 -2.6365 0.0001
11 16 5.8356 -2.6365 0.0001
12 8 6.3342 -2.1460 1.2371
13 8 6.3342 -2.1461 -1.2369
14 7 6.2488 -4.2401 -0.0004
15 6 5.9124 -5.0828 -1.1506
16 1 5.2799 -4.5225 -1.8390
17 6 7.1968 -5.5047 -1.8668
18 8 7.9728 -6.3371 -1.0024
19 6 5.1756 -6.3090 -0.6765
20 6 5.2478 -6.6883 0.6509
21 6 4.5732 -7.8127 1.0869
22 6 3.8243 -8.5612 0.1941
23 9 3.1644 -9.6602 0.6208
24 6 3.7513 -8.1825 -1.1351
25 6 4.4268 -7.0552 -1.5705
26 9 4.3568 -6.6846 -2.8677
27 1 -0.4850 0.8401 -0.0004
28 1 3.8753 -0.6796 0.8895
29 1 3.8746 -0.6807 -0.8905
30 1 3.6579 -3.1505 -0.8896
31 1 3.6586 -3.1501 0.8903
32 1 6.7136 -4.6214 0.7608
33 1 6.9436 -6.0569 -2.7718
34 1 7.7733 -4.6183 -2.1313
35 1 8.8036 -6.6423 -1.3918
36 1 5.8318 -6.1054 1.3476
37 1 4.6299 -8.1078 2.1242
38 1 3.1712 -8.7681 -1.8328
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000595385614.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:14:22
Heat of formation + Delta-G solvation = -185.905873 kcal
Electronic energy + Delta-G solvation = -27186.096158 eV
Core-core repulsion = 22791.978436 eV
Total energy + Delta-G solvation = -4394.117722 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 335.084 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-49.26074 -49.22333 -39.68230 -37.42962 -36.77319 -35.67696 -35.10581 -33.99117
-31.52072 -31.11740 -30.89666 -28.19102 -26.02584 -23.89209 -23.40706 -21.45791
-21.36456 -19.37669 -18.49054 -18.09134 -17.44540 -17.35831 -17.05268 -16.65488
-16.24280 -15.86932 -15.73181 -15.55139 -15.44431 -15.06285 -14.68616 -14.41573
-14.32556 -14.17715 -13.81560 -13.48241 -12.96616 -12.83613 -12.61327 -12.14892
-11.97003 -11.92456 -11.83085 -11.73185 -11.68158 -11.56519 -11.28237 -11.24893
-10.48881 -10.27865 -10.24647 -9.97736 -9.57192 -9.32622 -9.29553 -8.86773
-8.68192 -6.18278 -4.19908 0.53723 0.66247 0.76175 2.81753 3.09012
3.24890 3.32483 3.36059 3.58973 3.87983 4.01307 4.11472 4.21511
4.30019 4.33921 4.48470 4.59459 4.67832 4.87166 4.94692 5.09357
5.13323 5.33679 5.38903 5.44337 5.51448 5.55550 5.61174 5.66344
5.79026 6.03843 6.22697 6.47276 6.77150 6.85296 6.92290 7.34364
7.52102 8.34400 8.82904 9.41104 10.94055
Molecular weight = 335.08amu
Principal moments of inertia in cm(-1)
A = 0.012295 B = 0.003946 C = 0.003373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2276.831601 B = 7093.290272 C = 8299.675037
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.073 3.927
3 Si 0.869 3.131
4 H -0.271 1.271
5 H -0.282 1.282
6 H -0.262 1.262
7 C -0.520 4.520
8 H 0.078 0.922
9 C -0.006 4.006
10 C -0.583 4.583
11 S 2.585 3.415
12 O -0.961 6.961
13 O -0.964 6.964
14 N -1.114 6.114
15 C 0.201 3.799
16 H 0.116 0.884
17 C 0.069 3.931
18 O -0.565 6.565
19 C -0.128 4.128
20 C -0.037 4.037
21 C -0.160 4.160
22 C 0.128 3.872
23 F -0.133 7.133
24 C -0.189 4.189
25 C 0.136 3.864
26 F -0.128 7.128
27 H 0.267 0.733
28 H 0.033 0.967
29 H 0.028 0.972
30 H 0.124 0.876
31 H 0.129 0.871
32 H 0.418 0.582
33 H 0.059 0.941
34 H 0.068 0.932
35 H 0.380 0.620
36 H 0.144 0.856
37 H 0.144 0.856
38 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.668 -18.155 -2.116 22.823
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.130 4.130
3 Si 0.695 3.305
4 H -0.197 1.197
5 H -0.207 1.207
6 H -0.186 1.186
7 C -0.559 4.559
8 H 0.096 0.904
9 C -0.046 4.046
10 C -0.716 4.716
11 S 2.683 3.317
12 O -0.952 6.952
13 O -0.953 6.953
14 N -0.871 5.871
15 C 0.093 3.907
16 H 0.134 0.866
17 C -0.011 4.011
18 O -0.371 6.371
19 C -0.131 4.131
20 C -0.055 4.055
21 C -0.179 4.179
22 C 0.108 3.892
23 F -0.111 7.111
24 C -0.209 4.209
25 C 0.116 3.884
26 F -0.106 7.106
27 H 0.076 0.924
28 H 0.051 0.949
29 H 0.047 0.953
30 H 0.142 0.858
31 H 0.147 0.853
32 H 0.254 0.746
33 H 0.077 0.923
34 H 0.086 0.914
35 H 0.227 0.773
36 H 0.162 0.838
37 H 0.162 0.838
38 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges 13.548 -17.146 -1.903 21.935
hybrid contribution 0.101 0.020 -0.293 0.311
sum 13.649 -17.127 -2.196 22.010
Atomic orbital electron populations
1.69884 1.06217 1.27271 1.49895 1.24981 0.94806 0.99139 0.94106
0.86935 0.80704 0.83733 0.79135 1.19652 1.20732 1.18621 1.20833
0.87745 0.94938 1.52380 0.90387 1.19413 0.99989 0.87261 0.97912
1.30322 1.20824 1.09379 1.11066 1.05824 0.79204 0.72294 0.74403
1.93573 1.79186 1.77441 1.44968 1.93561 1.78427 1.77801 1.45553
1.55859 1.74246 1.29671 1.27278 1.19562 0.94452 0.89098 0.87619
0.86587 1.22567 0.91922 0.94621 0.91977 1.86444 1.36792 1.69674
1.44145 1.20053 1.00055 0.98609 0.94382 1.20644 0.95983 0.94515
0.94354 1.21218 0.99547 0.96517 1.00627 1.17311 0.94613 0.85138
0.92117 1.91535 1.78652 1.50713 1.90220 1.20967 1.04860 0.99043
0.96036 1.17014 0.98198 0.94509 0.78675 1.91540 1.94757 1.90820
1.33472 0.92355 0.94869 0.95336 0.85802 0.85266 0.74625 0.92330
0.91423 0.77327 0.83800 0.83843 0.83319
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.87 13.96 55.43 0.77 -26.09 16
2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16
3 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16
4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16
7 C -0.52 -14.32 9.66 -34.44 -0.33 -14.65 16
8 H 0.08 2.26 7.99 -52.49 -0.42 1.85 16
9 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16
10 C -0.58 -10.24 6.01 37.16 0.22 -10.02 16
11 S 2.59 41.25 5.31 -107.50 -0.57 40.68 16
12 O -0.96 -17.96 18.08 -57.54 -1.04 -19.00 16
13 O -0.96 -17.64 17.76 -57.54 -1.02 -18.66 16
14 N -1.11 -12.93 4.73 -5.89 -0.03 -12.96 16
15 C 0.20 2.19 2.46 -69.09 -0.17 2.02 16
16 H 0.12 1.25 7.38 -51.93 -0.38 0.87 16
17 C 0.07 0.63 6.86 37.16 0.25 0.89 16
18 O -0.57 -4.67 13.09 -35.23 -0.46 -5.13 16
19 C -0.13 -1.34 4.63 -104.54 -0.48 -1.83 16
20 C -0.04 -0.35 9.30 -39.60 -0.37 -0.71 16
21 C -0.16 -1.46 10.02 -39.51 -0.40 -1.85 16
22 C 0.13 1.28 7.30 -39.43 -0.29 0.99 16
23 F -0.13 -1.40 17.27 2.25 0.04 -1.36 16
24 C -0.19 -1.88 10.01 -39.45 -0.39 -2.28 16
25 C 0.14 1.45 7.23 -39.43 -0.28 1.17 16
26 F -0.13 -1.41 16.66 2.25 0.04 -1.37 16
27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
28 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16
29 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16
30 H 0.12 1.97 7.87 -51.93 -0.41 1.56 16
31 H 0.13 2.07 8.14 -51.93 -0.42 1.65 16
32 H 0.42 4.11 7.19 -34.47 -0.25 3.86 16
33 H 0.06 0.47 8.12 -51.93 -0.42 0.04 16
34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
35 H 0.38 1.59 9.12 45.56 0.42 2.01 16
36 H 0.14 1.14 6.21 -52.49 -0.33 0.81 16
37 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16
38 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16
LS Contribution 347.40 15.07 5.24 5.24
Total: -1.00 -35.27 347.40 -7.57 -42.85
By element:
Atomic # 1 Polarization: 7.23 SS G_CDS: -3.42 Total: 3.82 kcal
Atomic # 6 Polarization: -22.12 SS G_CDS: -2.45 Total: -24.57 kcal
Atomic # 7 Polarization: -39.80 SS G_CDS: 0.75 Total: -39.05 kcal
Atomic # 8 Polarization: -40.27 SS G_CDS: -2.52 Total: -42.79 kcal
Atomic # 9 Polarization: -2.81 SS G_CDS: 0.08 Total: -2.73 kcal
Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal
Atomic # 16 Polarization: 41.25 SS G_CDS: -0.57 Total: 40.68 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -35.27 -7.57 -42.85 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595385614.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -143.060 kcal
(2) G-P(sol) polarization free energy of solvation -35.275 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.335 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal
(6) G-S(sol) free energy of system = (1) + (5) -185.906 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds