Wall clock time and date at job start Tue Mar 31 2020 19:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48496 * 109.47362 * 86.15985 * 3 2 1 5 5 H 1.48499 * 109.46915 * 206.16351 * 3 2 1 6 6 H 1.48499 * 109.47144 * 326.16103 * 3 2 1 7 7 C 1.39946 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00237 * 21.33811 * 7 2 1 9 9 C 1.41400 * 119.99913 * 201.34012 * 7 2 1 10 10 C 1.40730 * 120.24251 * 23.24321 * 9 7 2 11 11 C 1.37597 * 119.74511 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24555 * 0.02562 * 11 10 9 13 13 C 1.38612 * 120.50093 * 359.97438 * 12 11 10 14 14 C 1.37642 * 120.24721 * 359.67669 * 13 12 11 15 15 S 1.76200 * 120.12504 * 180.31827 * 14 13 12 16 16 O 1.42099 * 106.40608 * 1.68368 * 15 14 13 17 17 O 1.42104 * 106.40092 * 134.60561 * 15 14 13 18 18 N 1.65600 * 107.21658 * 248.14587 * 15 14 13 19 19 C 1.46498 * 120.00132 * 67.18393 * 18 15 14 20 20 H 1.08999 * 109.46923 * 332.56396 * 19 18 15 21 21 C 1.52997 * 109.47080 * 92.56620 * 19 18 15 22 22 O 1.42901 * 109.47145 * 65.00270 * 21 19 18 23 23 C 1.53005 * 109.47020 * 212.56607 * 19 18 15 24 24 C 1.53000 * 109.47283 * 65.00025 * 23 19 18 25 25 F 1.39891 * 109.47117 * 175.00083 * 24 23 19 26 26 F 1.39906 * 109.46817 * 295.00111 * 24 23 19 27 27 H 0.96992 * 120.00225 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.12927 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87932 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.74931 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.87507 * 179.97438 * 13 12 11 32 32 H 0.97006 * 120.00002 * 247.18386 * 18 15 14 33 33 H 1.09007 * 109.47048 * 185.00161 * 21 19 18 34 34 H 1.09000 * 109.47038 * 304.99847 * 21 19 18 35 35 H 0.96706 * 113.99588 * 180.02562 * 22 21 19 36 36 H 1.09002 * 109.46992 * 184.99712 * 23 19 18 37 37 H 1.09001 * 109.46944 * 304.99872 * 23 19 18 38 38 H 1.09005 * 109.46849 * 54.99544 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4085 2.0934 1.3969 5 1 3.5779 1.4181 -0.6173 6 1 1.4826 2.6279 -0.7796 7 6 2.0080 -1.2120 0.0005 8 1 1.5236 -2.1154 -0.3394 9 6 3.3493 -1.2537 0.4462 10 6 3.8372 -0.2637 1.3193 11 6 5.1443 -0.3139 1.7461 12 6 5.9799 -1.3347 1.3188 13 6 5.5100 -2.3151 0.4589 14 6 4.2040 -2.2887 0.0248 15 16 3.6078 -3.5412 -1.0616 16 8 4.6881 -4.4409 -1.2682 17 8 2.3450 -3.9470 -0.5514 18 7 3.3122 -2.8219 -2.5236 19 6 4.4248 -2.3025 -3.3227 20 1 5.2470 -2.0245 -2.6632 21 6 4.8971 -3.3801 -4.3005 22 8 3.8566 -3.6610 -5.2389 23 6 3.9602 -1.0723 -4.1049 24 6 3.6055 0.0499 -3.1271 25 9 3.2903 1.2097 -3.8429 26 9 2.5044 -0.3353 -2.3548 27 1 -0.4850 0.8400 -0.0004 28 1 3.1885 0.5329 1.6523 29 1 5.5210 0.4445 2.4165 30 1 7.0046 -1.3662 1.6585 31 1 6.1697 -3.1053 0.1321 32 1 2.4023 -2.7445 -2.8510 33 1 5.7803 -3.0262 -4.8325 34 1 5.1443 -4.2876 -3.7495 35 1 4.0869 -4.3373 -5.8907 36 1 4.7600 -0.7387 -4.7660 37 1 3.0821 -1.3289 -4.6975 38 1 4.4564 0.2455 -2.4745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601403914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:07 Heat of formation + Delta-G solvation = -202.122684 kcal Electronic energy + Delta-G solvation = -29576.451859 eV Core-core repulsion = 25181.630923 eV Total energy + Delta-G solvation = -4394.820936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.40426 -46.34903 -37.88169 -37.79232 -36.29063 -34.95003 -34.91448 -33.88376 -30.84958 -30.60894 -30.07929 -27.64602 -25.39641 -23.15178 -22.06045 -21.30490 -20.99201 -18.86035 -17.73652 -17.63498 -17.15392 -16.88856 -16.56841 -16.43759 -16.06176 -15.47206 -15.05803 -14.58042 -14.32691 -14.12598 -13.79283 -13.61122 -13.44338 -13.33801 -12.92203 -12.73619 -12.66083 -12.24504 -12.07062 -11.95292 -11.83075 -11.38199 -11.28672 -11.24450 -11.20500 -10.99023 -10.83492 -10.62647 -10.49144 -10.34728 -9.96288 -9.92377 -9.38293 -9.32521 -8.88689 -8.23762 -7.86461 -7.22807 -4.82035 1.47120 2.11302 2.56069 2.96051 3.07422 3.09239 3.73162 3.80190 4.12456 4.24440 4.27572 4.60357 4.67591 4.75236 4.96914 5.12598 5.27128 5.31681 5.41154 5.43786 5.53605 5.79079 5.84763 5.86924 5.93094 6.00428 6.22906 6.35439 6.47337 6.66583 6.96866 7.14031 7.28384 7.44668 7.58707 7.61946 7.66527 7.86951 8.17753 8.35902 8.55742 9.73630 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011202 B = 0.008152 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.853013 B = 3433.967966 C = 4410.823660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.096 3.904 3 Si 0.925 3.075 4 H -0.276 1.276 5 H -0.249 1.249 6 H -0.288 1.288 7 C -0.418 4.418 8 H 0.129 0.871 9 C 0.156 3.844 10 C -0.243 4.243 11 C -0.042 4.042 12 C -0.273 4.273 13 C 0.021 3.979 14 C -0.786 4.786 15 S 2.703 3.297 16 O -0.999 6.999 17 O -0.966 6.966 18 N -1.104 6.104 19 C 0.167 3.833 20 H 0.100 0.900 21 C 0.058 3.942 22 O -0.566 6.566 23 C -0.167 4.167 24 C 0.246 3.754 25 F -0.217 7.217 26 F -0.163 7.163 27 H 0.292 0.708 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.421 0.579 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.375 0.625 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 0.461 -8.899 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.130 4.130 3 Si 0.753 3.247 4 H -0.204 1.204 5 H -0.173 1.173 6 H -0.215 1.215 7 C -0.443 4.443 8 H 0.146 0.854 9 C 0.150 3.850 10 C -0.262 4.262 11 C -0.061 4.061 12 C -0.293 4.293 13 C 0.001 3.999 14 C -0.881 4.881 15 S 2.800 3.200 16 O -0.989 6.989 17 O -0.956 6.956 18 N -0.860 5.860 19 C 0.058 3.942 20 H 0.118 0.882 21 C -0.021 4.021 22 O -0.371 6.371 23 C -0.207 4.207 24 C 0.192 3.808 25 F -0.198 7.198 26 F -0.144 7.144 27 H 0.103 0.897 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.256 0.744 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.222 0.778 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.536 0.072 -8.349 11.247 hybrid contribution 0.340 1.356 -0.024 1.398 sum 7.877 1.429 -8.373 11.584 Atomic orbital electron populations 1.69694 1.08447 1.31143 1.28944 1.26336 0.94680 1.02106 0.89848 0.86294 0.81012 0.79315 0.78084 1.20377 1.17252 1.21531 1.20432 0.93946 0.98003 1.31948 0.85387 1.16953 0.91195 0.88800 0.88024 1.21197 0.96353 1.03130 1.05502 1.20775 0.93602 0.95923 0.95761 1.20400 0.99105 1.00468 1.09327 1.20348 0.92701 0.94755 0.92089 1.29646 1.03794 1.25274 1.29375 1.01036 0.72947 0.73631 0.72388 1.93436 1.56948 1.62468 1.86075 1.93527 1.42170 1.81655 1.78279 1.55566 1.15037 1.78567 1.36855 1.20564 0.89820 0.91645 0.92132 0.88195 1.22811 0.89375 0.99038 0.90917 1.86492 1.41894 1.62647 1.46018 1.22838 1.05160 0.94159 0.98521 1.22035 0.88746 0.81672 0.88358 1.92934 1.94552 1.52287 1.80073 1.93185 1.55894 1.90529 1.74779 0.89701 0.87889 0.88632 0.88455 0.87160 0.74436 0.92995 0.91378 0.77840 0.88467 0.87994 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.02 13.93 55.55 0.77 -18.25 16 2 C 0.10 2.35 4.45 -17.34 -0.08 2.27 16 3 Si 0.93 20.07 22.47 -169.99 -3.82 16.25 16 4 H -0.28 -5.88 6.54 56.52 0.37 -5.51 16 5 H -0.25 -5.23 6.60 56.52 0.37 -4.86 16 6 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.42 -10.49 6.72 -37.74 -0.25 -10.74 16 8 H 0.13 3.46 5.36 -52.49 -0.28 3.17 16 9 C 0.16 3.71 5.19 -106.83 -0.55 3.16 16 10 C -0.24 -5.56 7.29 -38.87 -0.28 -5.84 16 11 C -0.04 -0.86 10.02 -39.66 -0.40 -1.26 16 12 C -0.27 -5.38 10.05 -39.29 -0.39 -5.78 16 13 C 0.02 0.43 9.53 -39.66 -0.38 0.05 16 14 C -0.79 -17.32 5.95 -38.87 -0.23 -17.55 16 15 S 2.70 56.05 5.05 -107.50 -0.54 55.51 16 16 O -1.00 -20.78 15.88 -57.17 -0.91 -21.69 16 17 O -0.97 -23.65 15.48 -57.17 -0.88 -24.53 16 18 N -1.10 -18.87 4.15 -4.89 -0.02 -18.89 16 19 C 0.17 2.30 2.54 -67.93 -0.17 2.13 16 20 H 0.10 1.30 7.99 -51.93 -0.42 0.89 16 21 C 0.06 0.68 6.88 37.16 0.26 0.93 16 22 O -0.57 -6.40 12.83 -35.23 -0.45 -6.85 16 23 C -0.17 -2.13 4.81 -26.73 -0.13 -2.26 16 24 C 0.25 3.92 5.05 37.16 0.19 4.10 16 25 F -0.22 -3.60 17.34 2.25 0.04 -3.56 16 26 F -0.16 -3.20 9.69 2.25 0.02 -3.18 16 27 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 28 H 0.10 2.35 4.02 -52.49 -0.21 2.14 16 29 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.11 2.03 7.33 -52.48 -0.38 1.65 16 32 H 0.42 7.17 8.42 -34.47 -0.29 6.88 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.88 7.32 -51.93 -0.38 0.50 16 35 H 0.38 2.57 9.12 45.56 0.42 2.98 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 1.35 7.73 -51.93 -0.40 0.95 16 38 H 0.10 1.55 8.01 -51.93 -0.42 1.14 16 LS Contribution 321.54 15.07 4.85 4.85 Total: -1.00 -31.00 321.54 -6.63 -37.62 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -3.25 Total: 13.50 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: -2.43 Total: -30.77 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.75 Total: -37.14 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -2.24 Total: -53.07 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.06 Total: -6.74 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -3.82 Total: 16.25 kcal Atomic # 16 Polarization: 56.05 SS G_CDS: -0.54 Total: 55.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.00 -6.63 -37.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601403914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.499 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds