Wall clock time and date at job start Tue Mar 31 2020 19:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48496 * 109.47362 * 86.15985 * 3 2 1 5 5 H 1.48499 * 109.46915 * 206.16351 * 3 2 1 6 6 H 1.48499 * 109.47144 * 326.16103 * 3 2 1 7 7 C 1.39946 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00237 * 21.33811 * 7 2 1 9 9 C 1.41400 * 119.99913 * 201.34012 * 7 2 1 10 10 C 1.40730 * 120.24251 * 23.24321 * 9 7 2 11 11 C 1.37597 * 119.74511 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24555 * 0.02562 * 11 10 9 13 13 C 1.38612 * 120.50093 * 359.97438 * 12 11 10 14 14 C 1.37642 * 120.24721 * 359.67669 * 13 12 11 15 15 S 1.76200 * 120.12504 * 180.31827 * 14 13 12 16 16 O 1.42099 * 106.40608 * 1.68368 * 15 14 13 17 17 O 1.42104 * 106.40092 * 134.60561 * 15 14 13 18 18 N 1.65600 * 107.21658 * 248.14587 * 15 14 13 19 19 C 1.46498 * 120.00132 * 67.18393 * 18 15 14 20 20 H 1.08999 * 109.46923 * 332.56396 * 19 18 15 21 21 C 1.52997 * 109.47080 * 92.56620 * 19 18 15 22 22 O 1.42901 * 109.47145 * 65.00270 * 21 19 18 23 23 C 1.53005 * 109.47020 * 212.56607 * 19 18 15 24 24 C 1.53000 * 109.47283 * 65.00025 * 23 19 18 25 25 F 1.39891 * 109.47117 * 175.00083 * 24 23 19 26 26 F 1.39906 * 109.46817 * 295.00111 * 24 23 19 27 27 H 0.96992 * 120.00225 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.12927 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.87932 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.74931 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.87507 * 179.97438 * 13 12 11 32 32 H 0.97006 * 120.00002 * 247.18386 * 18 15 14 33 33 H 1.09007 * 109.47048 * 185.00161 * 21 19 18 34 34 H 1.09000 * 109.47038 * 304.99847 * 21 19 18 35 35 H 0.96706 * 113.99588 * 180.02562 * 22 21 19 36 36 H 1.09002 * 109.46992 * 184.99712 * 23 19 18 37 37 H 1.09001 * 109.46944 * 304.99872 * 23 19 18 38 38 H 1.09005 * 109.46849 * 54.99544 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4085 2.0934 1.3969 5 1 3.5779 1.4181 -0.6173 6 1 1.4826 2.6279 -0.7796 7 6 2.0080 -1.2120 0.0005 8 1 1.5236 -2.1154 -0.3394 9 6 3.3493 -1.2537 0.4462 10 6 3.8372 -0.2637 1.3193 11 6 5.1443 -0.3139 1.7461 12 6 5.9799 -1.3347 1.3188 13 6 5.5100 -2.3151 0.4589 14 6 4.2040 -2.2887 0.0248 15 16 3.6078 -3.5412 -1.0616 16 8 4.6881 -4.4409 -1.2682 17 8 2.3450 -3.9470 -0.5514 18 7 3.3122 -2.8219 -2.5236 19 6 4.4248 -2.3025 -3.3227 20 1 5.2470 -2.0245 -2.6632 21 6 4.8971 -3.3801 -4.3005 22 8 3.8566 -3.6610 -5.2389 23 6 3.9602 -1.0723 -4.1049 24 6 3.6055 0.0499 -3.1271 25 9 3.2903 1.2097 -3.8429 26 9 2.5044 -0.3353 -2.3548 27 1 -0.4850 0.8400 -0.0004 28 1 3.1885 0.5329 1.6523 29 1 5.5210 0.4445 2.4165 30 1 7.0046 -1.3662 1.6585 31 1 6.1697 -3.1053 0.1321 32 1 2.4023 -2.7445 -2.8510 33 1 5.7803 -3.0262 -4.8325 34 1 5.1443 -4.2876 -3.7495 35 1 4.0869 -4.3373 -5.8907 36 1 4.7600 -0.7387 -4.7660 37 1 3.0821 -1.3289 -4.6975 38 1 4.4564 0.2455 -2.4745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601403914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:06 Heat of formation + Delta-G solvation = -227.662067 kcal Electronic energy + Delta-G solvation = -29577.559329 eV Core-core repulsion = 25181.630923 eV Total energy + Delta-G solvation = -4395.928407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.70238 -47.68447 -39.51537 -38.88720 -37.96846 -36.65415 -35.97790 -35.64029 -32.46043 -31.96171 -31.74309 -28.68309 -27.14429 -24.27073 -23.72655 -22.92524 -22.18001 -20.34753 -19.50370 -18.93403 -18.41590 -18.20102 -17.97593 -17.76458 -17.40966 -17.12871 -16.48199 -15.96781 -15.86220 -15.49006 -15.28999 -15.07042 -14.73444 -14.62431 -14.52829 -14.16147 -13.97745 -13.78281 -13.59045 -13.28206 -13.10008 -13.08224 -12.97407 -12.87148 -12.54656 -12.45514 -12.30530 -12.24604 -12.09075 -11.70045 -11.61551 -11.09761 -10.97764 -10.78756 -10.24984 -9.89886 -9.57986 -9.01446 -6.62925 -0.13460 0.41844 0.85301 1.21414 1.35937 1.38789 1.99882 2.33879 2.54160 2.97911 3.00813 3.40864 3.44396 3.50542 3.63005 3.80640 3.87872 4.23538 4.25095 4.29489 4.35779 4.43991 4.47760 4.69596 4.71914 4.74761 4.90888 4.95439 4.98417 5.24935 5.30761 5.46860 5.64098 5.75383 5.92124 6.14548 6.23248 6.37595 6.60041 6.76606 7.02804 8.01257 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011202 B = 0.008152 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.853013 B = 3433.967966 C = 4410.823660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.074 3.926 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.239 1.239 6 H -0.287 1.287 7 C -0.445 4.445 8 H 0.097 0.903 9 C 0.150 3.850 10 C -0.273 4.273 11 C -0.037 4.037 12 C -0.259 4.259 13 C 0.012 3.988 14 C -0.793 4.793 15 S 2.718 3.282 16 O -1.000 7.000 17 O -1.011 7.011 18 N -1.097 6.097 19 C 0.152 3.848 20 H 0.110 0.890 21 C 0.063 3.937 22 O -0.582 6.582 23 C -0.152 4.152 24 C 0.231 3.769 25 F -0.222 7.222 26 F -0.187 7.187 27 H 0.298 0.702 28 H 0.099 0.901 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.419 0.581 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.395 0.605 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.697 0.994 -9.620 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.148 4.148 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.162 1.162 6 H -0.215 1.215 7 C -0.471 4.471 8 H 0.115 0.885 9 C 0.145 3.855 10 C -0.292 4.292 11 C -0.056 4.056 12 C -0.279 4.279 13 C -0.007 4.007 14 C -0.887 4.887 15 S 2.814 3.186 16 O -0.990 6.990 17 O -1.002 7.002 18 N -0.856 5.856 19 C 0.045 3.955 20 H 0.128 0.872 21 C -0.016 4.016 22 O -0.390 6.390 23 C -0.191 4.191 24 C 0.178 3.822 25 F -0.204 7.204 26 F -0.169 7.169 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.255 0.745 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.245 0.755 36 H 0.154 0.846 37 H 0.114 0.886 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.091 0.591 -9.076 14.344 hybrid contribution -0.542 1.083 0.188 1.226 sum 10.549 1.674 -8.888 13.895 Atomic orbital electron populations 1.69722 1.09518 1.32007 1.31756 1.26808 0.94950 1.03942 0.89095 0.85743 0.80623 0.76789 0.78279 1.19836 1.16217 1.21465 1.20213 0.94980 0.97393 1.34545 0.88482 1.17100 0.90908 0.89608 0.87925 1.21315 0.97817 1.03465 1.06602 1.21205 0.92549 0.96635 0.95163 1.20899 1.00663 0.99016 1.07359 1.20719 0.92234 0.95708 0.92071 1.29924 1.04488 1.24548 1.29714 1.00426 0.71880 0.73507 0.72754 1.93424 1.56668 1.62635 1.86291 1.93470 1.44316 1.82673 1.79737 1.55286 1.16051 1.78583 1.35703 1.21008 0.88878 0.92915 0.92689 0.87246 1.22726 0.90489 0.97605 0.90830 1.86449 1.42384 1.63654 1.46522 1.22780 1.06200 0.92371 0.97780 1.22486 0.88006 0.82556 0.89175 1.92917 1.94596 1.52753 1.80115 1.93145 1.57249 1.90779 1.75692 0.89109 0.88369 0.85219 0.84685 0.84921 0.74549 0.89042 0.92895 0.75548 0.84592 0.88565 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.34 13.93 21.83 0.30 -42.04 16 2 C 0.07 3.71 4.45 85.26 0.38 4.09 16 3 Si 0.96 41.26 22.47 68.60 1.54 42.80 16 4 H -0.27 -11.25 6.54 99.48 0.65 -10.60 16 5 H -0.24 -9.70 6.60 99.48 0.66 -9.04 16 6 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.44 -23.15 6.72 23.46 0.16 -22.99 16 8 H 0.10 5.58 5.36 -2.91 -0.02 5.57 16 9 C 0.15 7.13 5.19 -21.29 -0.11 7.02 16 10 C -0.27 -12.12 7.29 22.73 0.17 -11.96 16 11 C -0.04 -1.39 10.02 22.22 0.22 -1.17 16 12 C -0.26 -9.07 10.05 22.46 0.23 -8.85 16 13 C 0.01 0.46 9.53 22.22 0.21 0.68 16 14 C -0.79 -34.17 5.95 22.73 0.14 -34.03 16 15 S 2.72 112.94 5.05 -56.49 -0.29 112.65 16 16 O -1.00 -40.42 15.88 -128.00 -2.03 -42.45 16 17 O -1.01 -51.58 15.48 -128.00 -1.98 -53.56 16 18 N -1.10 -37.31 4.15 -169.39 -0.70 -38.02 16 19 C 0.15 3.87 2.54 44.99 0.11 3.98 16 20 H 0.11 2.54 7.99 -2.39 -0.02 2.52 16 21 C 0.06 1.27 6.88 71.98 0.50 1.77 16 22 O -0.58 -11.76 12.83 -148.98 -1.91 -13.67 16 23 C -0.15 -3.52 4.81 30.60 0.15 -3.37 16 24 C 0.23 7.08 5.05 71.98 0.36 7.44 16 25 F -0.22 -7.09 17.34 44.97 0.78 -6.31 16 26 F -0.19 -7.47 9.69 44.97 0.44 -7.03 16 27 H 0.30 14.08 8.30 -92.71 -0.77 13.31 16 28 H 0.10 4.42 4.02 -2.91 -0.01 4.40 16 29 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 30 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 31 H 0.13 4.39 7.33 -2.91 -0.02 4.37 16 32 H 0.42 14.75 8.42 -96.74 -0.81 13.94 16 33 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.05 1.24 7.32 -2.39 -0.02 1.23 16 35 H 0.39 4.36 9.12 -74.05 -0.68 3.68 16 36 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.10 2.39 7.73 -2.39 -0.02 2.37 16 38 H 0.11 3.15 8.01 -2.38 -0.02 3.13 16 Total: -1.00 -68.84 321.54 -1.80 -70.63 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -0.45 Total: 34.37 kcal Atomic # 6 Polarization: -59.89 SS G_CDS: 2.51 Total: -57.38 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -0.40 Total: -80.06 kcal Atomic # 8 Polarization: -103.76 SS G_CDS: -5.92 Total: -109.68 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 1.22 Total: -13.34 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.54 Total: 42.80 kcal Atomic # 16 Polarization: 112.94 SS G_CDS: -0.29 Total: 112.65 kcal Total: -68.84 -1.80 -70.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601403914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.028 kcal (2) G-P(sol) polarization free energy of solvation -68.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds