Wall clock time and date at job start Tue Mar 31 2020 19:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86807 * 119.99839 * 2 1 4 4 H 1.48495 * 109.47068 * 265.39676 * 3 2 1 5 5 H 1.48500 * 109.47126 * 25.39954 * 3 2 1 6 6 H 1.48495 * 109.46709 * 145.39703 * 3 2 1 7 7 C 1.39940 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00033 * 350.10016 * 7 2 1 9 9 C 1.41393 * 120.00101 * 170.10238 * 7 2 1 10 10 C 1.40730 * 120.24512 * 321.97020 * 9 7 2 11 11 C 1.37597 * 119.74549 * 180.32311 * 10 9 7 12 12 C 1.38655 * 120.25160 * 359.65832 * 11 10 9 13 13 C 1.38618 * 120.49621 * 0.02562 * 12 11 10 14 14 C 1.37631 * 120.24801 * 0.02562 * 13 12 11 15 15 S 1.76207 * 120.12438 * 179.97438 * 14 13 12 16 16 O 1.42098 * 106.40070 * 352.64856 * 15 14 13 17 17 O 1.42098 * 106.40206 * 219.72559 * 15 14 13 18 18 N 1.65603 * 107.21655 * 106.18918 * 15 14 13 19 19 C 1.46503 * 119.99733 * 257.47721 * 18 15 14 20 20 C 1.53002 * 109.47034 * 262.70304 * 19 18 15 21 21 O 1.42901 * 109.47133 * 63.08188 * 20 19 18 22 22 C 1.46494 * 120.00457 * 77.47367 * 18 15 14 23 23 C 1.52993 * 109.47570 * 238.48016 * 22 18 15 24 24 F 1.39901 * 109.47199 * 293.93137 * 23 22 18 25 25 F 1.39903 * 109.47110 * 53.92928 * 23 22 18 26 26 H 0.97001 * 120.00064 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.12758 * 0.02562 * 10 9 7 28 28 H 1.08003 * 119.87557 * 179.68566 * 11 10 9 29 29 H 1.07995 * 119.75201 * 180.02562 * 12 11 10 30 30 H 1.08004 * 119.87379 * 180.02562 * 13 12 11 31 31 H 1.08997 * 109.46942 * 22.70262 * 19 18 15 32 32 H 1.08997 * 109.46894 * 142.70120 * 19 18 15 33 33 H 1.09001 * 109.46994 * 183.08252 * 20 19 18 34 34 H 1.09001 * 109.46967 * 303.08345 * 20 19 18 35 35 H 0.96695 * 114.00039 * 184.98977 * 21 20 19 36 36 H 1.09003 * 109.46877 * 358.48143 * 22 18 15 37 37 H 1.09000 * 109.47224 * 118.47710 * 22 18 15 38 38 H 1.09004 * 109.47222 * 173.92769 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.5870 1.9903 -1.3955 5 1 1.3944 2.6788 0.6005 6 1 3.4877 1.4702 0.7951 7 6 2.0080 -1.2119 -0.0005 8 1 1.4800 -2.1404 0.1599 9 6 3.4061 -1.2209 -0.2110 10 6 3.9894 -0.3354 -1.1363 11 6 5.3503 -0.3575 -1.3379 12 6 6.1473 -1.2430 -0.6284 13 6 5.5843 -2.1151 0.2903 14 6 4.2253 -2.1112 0.5073 15 16 3.5130 -3.2217 1.6753 16 8 4.5568 -4.0927 2.0890 17 8 2.2977 -3.6828 1.1012 18 7 3.0928 -2.3302 3.0062 19 6 3.9316 -2.3664 4.2067 20 6 3.3477 -3.3663 5.2069 21 8 3.3750 -4.6779 4.6403 22 6 1.8823 -1.5054 2.9829 23 6 2.2542 -0.0461 3.2528 24 9 2.7362 0.0782 4.5603 25 9 3.2444 0.3573 2.3506 26 1 -0.4850 0.8400 0.0004 27 1 3.3706 0.3556 -1.6895 28 1 5.7996 0.3176 -2.0512 29 1 7.2146 -1.2532 -0.7927 30 1 6.2146 -2.8004 0.8377 31 1 4.9418 -2.6722 3.9350 32 1 3.9613 -1.3752 4.6591 33 1 3.9402 -3.3532 6.1217 34 1 2.3183 -3.0912 5.4367 35 1 2.9504 -5.3520 5.1883 36 1 1.4075 -1.5844 2.0049 37 1 1.1914 -1.8523 3.7513 38 1 1.3723 0.5825 3.1294 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601407474.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:00 Heat of formation + Delta-G solvation = -182.614213 kcal Electronic energy + Delta-G solvation = -29962.741170 eV Core-core repulsion = 25568.766185 eV Total energy + Delta-G solvation = -4393.974985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.58294 -46.54101 -37.90475 -37.31579 -36.32562 -35.18310 -34.78999 -33.81065 -30.73680 -30.21945 -30.00775 -27.40133 -25.42536 -23.07212 -22.07308 -21.57933 -21.17181 -18.35307 -17.87338 -17.66113 -17.22599 -17.07983 -16.57588 -16.33469 -16.00648 -15.32380 -14.97012 -14.63972 -14.27197 -13.96857 -13.75635 -13.58792 -13.48158 -13.21693 -13.05944 -12.86240 -12.47949 -12.17820 -12.01599 -11.84241 -11.65507 -11.58419 -11.34759 -11.21618 -11.13619 -10.87365 -10.85990 -10.53258 -10.35263 -10.05769 -9.85708 -9.81669 -9.35167 -9.20248 -8.53970 -8.22507 -7.77863 -7.12675 -4.88003 1.43247 2.07381 2.50613 2.98812 3.03782 3.21209 3.69034 3.82040 4.23681 4.28832 4.49522 4.65913 4.82616 4.96960 5.07897 5.13204 5.34480 5.40152 5.46328 5.47815 5.71594 5.81302 5.92446 5.95889 6.09443 6.16188 6.21839 6.43007 6.48581 6.63223 6.95355 7.05283 7.08034 7.27700 7.44114 7.56327 7.83281 7.84761 8.21751 8.33375 8.57225 9.82620 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.012864 B = 0.008126 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.146962 B = 3445.083129 C = 4322.237967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.089 3.911 3 Si 0.887 3.113 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.217 1.217 7 C -0.487 4.487 8 H 0.143 0.857 9 C 0.181 3.819 10 C -0.230 4.230 11 C -0.047 4.047 12 C -0.248 4.248 13 C 0.013 3.987 14 C -0.759 4.759 15 S 2.709 3.291 16 O -0.973 6.973 17 O -0.963 6.963 18 N -0.983 5.983 19 C 0.104 3.896 20 C 0.060 3.940 21 O -0.560 6.560 22 C 0.063 3.937 23 C 0.239 3.761 24 F -0.213 7.213 25 F -0.176 7.176 26 H 0.289 0.711 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.372 0.628 36 H 0.157 0.843 37 H 0.084 0.916 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 1.371 9.051 9.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.140 1.140 7 C -0.515 4.515 8 H 0.160 0.840 9 C 0.176 3.824 10 C -0.250 4.250 11 C -0.065 4.065 12 C -0.268 4.268 13 C -0.007 4.007 14 C -0.853 4.853 15 S 2.805 3.195 16 O -0.964 6.964 17 O -0.953 6.953 18 N -0.817 5.817 19 C -0.022 4.022 20 C -0.020 4.020 21 O -0.364 6.364 22 C -0.064 4.064 23 C 0.183 3.817 24 F -0.195 7.195 25 F -0.157 7.157 26 H 0.100 0.900 27 H 0.128 0.872 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.218 0.782 36 H 0.174 0.826 37 H 0.102 0.898 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.267 0.873 8.549 8.888 hybrid contribution 0.266 1.515 0.073 1.540 sum 2.532 2.388 8.623 9.298 Atomic orbital electron populations 1.69679 1.07738 1.30577 1.33572 1.26185 0.94792 1.01318 0.90927 0.87026 0.82549 0.79368 0.79669 1.20261 1.21709 1.13970 1.20467 0.91007 0.97671 1.42368 0.84042 1.17116 0.92474 0.86792 0.86029 1.21438 0.94831 1.05443 1.03275 1.20884 0.93967 0.95651 0.96034 1.20570 0.98131 1.03071 1.04997 1.20410 0.92768 0.93886 0.93601 1.30235 1.02959 1.27794 1.24268 1.01183 0.73238 0.72988 0.72050 1.93468 1.58018 1.62777 1.82130 1.93481 1.45810 1.79060 1.76935 1.57491 1.33151 1.62966 1.28070 1.21671 0.94844 0.99753 0.85901 1.22619 0.99728 0.83941 0.95707 1.86691 1.82141 1.17788 1.49798 1.22900 0.87766 0.86692 1.09026 1.22512 0.88620 0.99036 0.71487 1.92813 1.90144 1.97026 1.39486 1.93179 1.65155 1.91500 1.65841 0.90007 0.87182 0.88247 0.88040 0.86840 0.88965 0.87755 0.93141 0.93535 0.78224 0.82595 0.89794 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.45 13.93 55.55 0.77 -17.68 16 2 C 0.09 2.05 4.92 -17.34 -0.09 1.97 16 3 Si 0.89 18.76 22.06 -169.99 -3.75 15.01 16 4 H -0.28 -5.89 6.42 56.52 0.36 -5.52 16 5 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.22 -4.65 5.15 56.52 0.29 -4.36 16 7 C -0.49 -11.94 5.61 -37.74 -0.21 -12.15 16 8 H 0.14 3.78 5.03 -52.48 -0.26 3.52 16 9 C 0.18 4.34 4.23 -106.83 -0.45 3.89 16 10 C -0.23 -5.29 7.21 -38.87 -0.28 -5.57 16 11 C -0.05 -0.97 10.02 -39.66 -0.40 -1.36 16 12 C -0.25 -5.03 10.05 -39.29 -0.39 -5.43 16 13 C 0.01 0.28 9.53 -39.66 -0.38 -0.09 16 14 C -0.76 -17.55 6.00 -38.87 -0.23 -17.78 16 15 S 2.71 60.13 5.20 -107.50 -0.56 59.57 16 16 O -0.97 -22.35 14.75 -61.17 -0.90 -23.25 16 17 O -0.96 -23.88 14.31 -57.17 -0.82 -24.70 16 18 N -0.98 -18.27 2.68 -114.39 -0.31 -18.57 16 19 C 0.10 1.63 5.63 -4.04 -0.02 1.61 16 20 C 0.06 0.79 7.38 37.16 0.27 1.06 16 21 O -0.56 -8.52 12.70 -40.29 -0.51 -9.03 16 22 C 0.06 1.10 5.71 -4.05 -0.02 1.08 16 23 C 0.24 3.95 5.25 37.15 0.19 4.15 16 24 F -0.21 -3.20 14.51 2.25 0.03 -3.17 16 25 F -0.18 -3.45 11.05 2.25 0.02 -3.43 16 26 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 27 H 0.11 2.49 4.99 -52.48 -0.26 2.23 16 28 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.11 2.25 7.35 -52.48 -0.39 1.86 16 31 H 0.09 1.51 7.18 -51.93 -0.37 1.14 16 32 H 0.10 1.48 5.19 -51.93 -0.27 1.21 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.55 8.05 -51.93 -0.42 0.14 16 35 H 0.37 3.69 9.12 45.56 0.42 4.10 16 36 H 0.16 3.19 3.68 -51.93 -0.19 3.00 16 37 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 38 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -30.39 310.77 -6.48 -36.87 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -3.14 Total: 12.32 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -2.01 Total: -28.62 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.47 Total: -36.25 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -2.23 Total: -56.98 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.06 Total: -6.60 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -3.75 Total: 15.01 kcal Atomic # 16 Polarization: 60.13 SS G_CDS: -0.56 Total: 59.57 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.39 -6.48 -36.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601407474.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.742 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds