Wall clock time and date at job start Tue Mar 31 2020 19:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86807 * 119.99839 * 2 1 4 4 H 1.48495 * 109.47068 * 265.39676 * 3 2 1 5 5 H 1.48500 * 109.47126 * 25.39954 * 3 2 1 6 6 H 1.48495 * 109.46709 * 145.39703 * 3 2 1 7 7 C 1.39940 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00033 * 350.10016 * 7 2 1 9 9 C 1.41393 * 120.00101 * 170.10238 * 7 2 1 10 10 C 1.40730 * 120.24512 * 321.97020 * 9 7 2 11 11 C 1.37597 * 119.74549 * 180.32311 * 10 9 7 12 12 C 1.38655 * 120.25160 * 359.65832 * 11 10 9 13 13 C 1.38618 * 120.49621 * 0.02562 * 12 11 10 14 14 C 1.37631 * 120.24801 * 0.02562 * 13 12 11 15 15 S 1.76207 * 120.12438 * 179.97438 * 14 13 12 16 16 O 1.42098 * 106.40070 * 352.64856 * 15 14 13 17 17 O 1.42098 * 106.40206 * 219.72559 * 15 14 13 18 18 N 1.65603 * 107.21655 * 106.18918 * 15 14 13 19 19 C 1.46503 * 119.99733 * 257.47721 * 18 15 14 20 20 C 1.53002 * 109.47034 * 262.70304 * 19 18 15 21 21 O 1.42901 * 109.47133 * 63.08188 * 20 19 18 22 22 C 1.46494 * 120.00457 * 77.47367 * 18 15 14 23 23 C 1.52993 * 109.47570 * 238.48016 * 22 18 15 24 24 F 1.39901 * 109.47199 * 293.93137 * 23 22 18 25 25 F 1.39903 * 109.47110 * 53.92928 * 23 22 18 26 26 H 0.97001 * 120.00064 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.12758 * 0.02562 * 10 9 7 28 28 H 1.08003 * 119.87557 * 179.68566 * 11 10 9 29 29 H 1.07995 * 119.75201 * 180.02562 * 12 11 10 30 30 H 1.08004 * 119.87379 * 180.02562 * 13 12 11 31 31 H 1.08997 * 109.46942 * 22.70262 * 19 18 15 32 32 H 1.08997 * 109.46894 * 142.70120 * 19 18 15 33 33 H 1.09001 * 109.46994 * 183.08252 * 20 19 18 34 34 H 1.09001 * 109.46967 * 303.08345 * 20 19 18 35 35 H 0.96695 * 114.00039 * 184.98977 * 21 20 19 36 36 H 1.09003 * 109.46877 * 358.48143 * 22 18 15 37 37 H 1.09000 * 109.47224 * 118.47710 * 22 18 15 38 38 H 1.09004 * 109.47222 * 173.92769 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.5870 1.9903 -1.3955 5 1 1.3944 2.6788 0.6005 6 1 3.4877 1.4702 0.7951 7 6 2.0080 -1.2119 -0.0005 8 1 1.4800 -2.1404 0.1599 9 6 3.4061 -1.2209 -0.2110 10 6 3.9894 -0.3354 -1.1363 11 6 5.3503 -0.3575 -1.3379 12 6 6.1473 -1.2430 -0.6284 13 6 5.5843 -2.1151 0.2903 14 6 4.2253 -2.1112 0.5073 15 16 3.5130 -3.2217 1.6753 16 8 4.5568 -4.0927 2.0890 17 8 2.2977 -3.6828 1.1012 18 7 3.0928 -2.3302 3.0062 19 6 3.9316 -2.3664 4.2067 20 6 3.3477 -3.3663 5.2069 21 8 3.3750 -4.6779 4.6403 22 6 1.8823 -1.5054 2.9829 23 6 2.2542 -0.0461 3.2528 24 9 2.7362 0.0782 4.5603 25 9 3.2444 0.3573 2.3506 26 1 -0.4850 0.8400 0.0004 27 1 3.3706 0.3556 -1.6895 28 1 5.7996 0.3176 -2.0512 29 1 7.2146 -1.2532 -0.7927 30 1 6.2146 -2.8004 0.8377 31 1 4.9418 -2.6722 3.9350 32 1 3.9613 -1.3752 4.6591 33 1 3.9402 -3.3532 6.1217 34 1 2.3183 -3.0912 5.4367 35 1 2.9504 -5.3520 5.1883 36 1 1.4075 -1.5844 2.0049 37 1 1.1914 -1.8523 3.7513 38 1 1.3723 0.5825 3.1294 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601407474.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:59 Heat of formation + Delta-G solvation = -206.374356 kcal Electronic energy + Delta-G solvation = -29963.771487 eV Core-core repulsion = 25568.766185 eV Total energy + Delta-G solvation = -4395.005302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.90291 -47.88202 -39.59992 -38.52333 -38.09244 -36.60281 -36.47181 -35.53282 -32.44791 -31.81766 -31.36888 -28.69045 -27.16052 -24.33323 -23.73285 -22.92246 -22.86227 -19.87396 -19.57923 -19.18049 -18.63279 -18.25000 -18.13195 -17.80368 -17.40641 -16.99385 -16.50710 -16.06705 -15.85956 -15.38962 -15.23528 -15.16736 -14.96592 -14.61865 -14.53472 -14.34510 -13.78095 -13.73650 -13.66227 -13.41903 -13.22152 -13.00677 -12.89669 -12.84098 -12.71594 -12.55200 -12.46228 -12.19880 -11.92321 -11.56040 -11.49431 -11.06455 -10.90829 -10.84283 -10.00018 -9.84143 -9.50055 -8.86698 -6.66831 -0.22797 0.36279 0.79514 1.31335 1.36164 1.54062 2.13457 2.16858 2.53945 2.93691 3.06327 3.29069 3.42023 3.52748 3.65073 3.74698 3.96946 4.19393 4.22171 4.26869 4.32347 4.34459 4.58983 4.62552 4.70575 4.74101 4.87386 4.92174 4.96064 5.14020 5.26823 5.38379 5.53921 5.71066 5.78438 5.85408 6.13746 6.39424 6.58514 6.77596 7.02223 8.14159 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.012864 B = 0.008126 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.146962 B = 3445.083129 C = 4322.237967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.076 3.924 3 Si 0.922 3.078 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.221 1.221 7 C -0.501 4.501 8 H 0.110 0.890 9 C 0.166 3.834 10 C -0.254 4.254 11 C -0.045 4.045 12 C -0.240 4.240 13 C -0.002 4.002 14 C -0.775 4.775 15 S 2.718 3.282 16 O -0.987 6.987 17 O -0.998 6.998 18 N -0.979 5.979 19 C 0.094 3.906 20 C 0.059 3.941 21 O -0.593 6.593 22 C 0.058 3.942 23 C 0.240 3.760 24 F -0.202 7.202 25 F -0.194 7.194 26 H 0.299 0.701 27 H 0.108 0.892 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.392 0.608 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 2.628 10.194 11.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.143 4.143 3 Si 0.747 3.253 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.144 1.144 7 C -0.530 4.530 8 H 0.128 0.872 9 C 0.162 3.838 10 C -0.273 4.273 11 C -0.063 4.063 12 C -0.260 4.260 13 C -0.022 4.022 14 C -0.868 4.868 15 S 2.815 3.185 16 O -0.978 6.978 17 O -0.988 6.988 18 N -0.815 5.815 19 C -0.030 4.030 20 C -0.020 4.020 21 O -0.401 6.401 22 C -0.069 4.069 23 C 0.184 3.816 24 F -0.183 7.183 25 F -0.175 7.175 26 H 0.110 0.890 27 H 0.126 0.874 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.145 0.855 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.242 0.758 36 H 0.146 0.854 37 H 0.133 0.867 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.516 2.115 9.705 10.537 hybrid contribution -0.039 1.050 -0.241 1.078 sum 3.478 3.165 9.465 10.568 Atomic orbital electron populations 1.69678 1.08434 1.31691 1.34461 1.26465 0.95039 1.02491 0.90338 0.86485 0.81968 0.77553 0.79297 1.20764 1.19963 1.14369 1.20232 0.91427 0.97075 1.44247 0.87221 1.17244 0.92435 0.87579 0.86545 1.21566 0.96146 1.05908 1.03685 1.21308 0.93137 0.95767 0.96091 1.21031 1.00003 1.01601 1.03370 1.20735 0.92435 0.94703 0.94329 1.30448 1.03829 1.27610 1.24876 1.00673 0.72400 0.73094 0.72361 1.93434 1.58286 1.63663 1.82409 1.93439 1.47168 1.80145 1.78078 1.57174 1.33749 1.62770 1.27820 1.21979 0.94087 1.01663 0.85297 1.22699 1.01079 0.82584 0.95649 1.86629 1.82790 1.19160 1.51514 1.22943 0.87785 0.87504 1.08631 1.22604 0.88793 0.98622 0.71540 1.92826 1.90076 1.96930 1.38486 1.93126 1.66005 1.91640 1.66766 0.89016 0.87390 0.84639 0.84426 0.85539 0.90066 0.86130 0.89909 0.91996 0.75842 0.85356 0.86745 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.49 13.93 21.83 0.30 -38.19 16 2 C 0.08 3.52 4.92 85.26 0.42 3.94 16 3 Si 0.92 37.78 22.06 68.60 1.51 39.29 16 4 H -0.28 -11.58 6.42 99.48 0.64 -10.94 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 6 H -0.22 -9.16 5.15 99.48 0.51 -8.65 16 7 C -0.50 -25.21 5.61 23.46 0.13 -25.07 16 8 H 0.11 6.19 5.03 -2.91 -0.01 6.17 16 9 C 0.17 8.06 4.23 -21.29 -0.09 7.97 16 10 C -0.25 -11.43 7.21 22.73 0.16 -11.27 16 11 C -0.04 -1.74 10.02 22.22 0.22 -1.52 16 12 C -0.24 -9.10 10.05 22.46 0.23 -8.87 16 13 C 0.00 -0.10 9.53 22.22 0.21 0.11 16 14 C -0.77 -35.93 6.00 22.73 0.14 -35.79 16 15 S 2.72 122.50 5.20 -56.49 -0.29 122.21 16 16 O -0.99 -45.66 14.75 -124.18 -1.83 -47.49 16 17 O -1.00 -51.54 14.31 -128.00 -1.83 -53.37 16 18 N -0.98 -35.89 2.68 -515.81 -1.38 -37.28 16 19 C 0.09 2.82 5.63 86.38 0.49 3.30 16 20 C 0.06 1.42 7.38 71.98 0.53 1.95 16 21 O -0.59 -17.28 12.70 -144.14 -1.83 -19.12 16 22 C 0.06 1.99 5.71 86.38 0.49 2.48 16 23 C 0.24 7.55 5.25 71.98 0.38 7.93 16 24 F -0.20 -5.54 14.51 44.97 0.65 -4.89 16 25 F -0.19 -7.42 11.05 44.97 0.50 -6.93 16 26 H 0.30 12.57 8.30 -92.71 -0.77 11.80 16 27 H 0.11 4.83 4.99 -2.91 -0.01 4.81 16 28 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 29 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 30 H 0.13 4.87 7.35 -2.91 -0.02 4.85 16 31 H 0.08 2.59 7.18 -2.39 -0.02 2.58 16 32 H 0.12 3.15 5.19 -2.39 -0.01 3.14 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.29 8.05 -2.39 -0.02 1.27 16 35 H 0.39 7.22 9.12 -74.06 -0.68 6.54 16 36 H 0.13 5.36 3.68 -2.39 -0.01 5.35 16 37 H 0.11 3.15 8.05 -2.39 -0.02 3.14 16 38 H 0.13 3.49 8.14 -2.38 -0.02 3.47 16 Total: -1.00 -66.15 310.77 -0.69 -66.85 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.20 Total: 33.75 kcal Atomic # 6 Polarization: -58.14 SS G_CDS: 3.31 Total: -54.83 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -1.08 Total: -75.47 kcal Atomic # 8 Polarization: -114.49 SS G_CDS: -5.50 Total: -119.98 kcal Atomic # 9 Polarization: -12.96 SS G_CDS: 1.15 Total: -11.81 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.51 Total: 39.29 kcal Atomic # 16 Polarization: 122.50 SS G_CDS: -0.29 Total: 122.21 kcal Total: -66.15 -0.69 -66.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601407474.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.529 kcal (2) G-P(sol) polarization free energy of solvation -66.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds