Wall clock time and date at job start Tue Mar 31 2020 19:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86801 * 120.00227 * 2 1 4 4 H 1.48499 * 109.46783 * 239.99866 * 3 2 1 5 5 H 1.48497 * 109.46986 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47316 * 119.99689 * 3 2 1 7 7 C 1.39954 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99577 * 168.41872 * 7 2 1 9 9 C 1.41388 * 120.00303 * 348.42083 * 7 2 1 10 10 C 1.40736 * 120.24290 * 331.72236 * 9 7 2 11 11 C 1.37604 * 119.74304 * 180.31937 * 10 9 7 12 12 C 1.38658 * 120.24632 * 359.66246 * 11 10 9 13 13 C 1.38609 * 120.50091 * 0.02562 * 12 11 10 14 14 C 1.37634 * 120.25011 * 0.02562 * 13 12 11 15 15 S 1.76201 * 120.12642 * 179.97438 * 14 13 12 16 16 O 1.42094 * 106.40432 * 132.26743 * 15 14 13 17 17 O 1.42104 * 106.40266 * 359.34878 * 15 14 13 18 18 N 1.65603 * 107.21941 * 245.80778 * 15 14 13 19 19 C 1.46498 * 119.99589 * 62.81089 * 18 15 14 20 20 C 1.53008 * 109.46909 * 165.98878 * 19 18 15 21 21 C 1.52995 * 109.47271 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.47220 * 179.97438 * 21 20 19 23 23 C 1.42900 * 113.99742 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.47548 * 300.00162 * 23 22 21 25 25 F 1.39897 * 109.47040 * 60.00729 * 23 22 21 26 26 H 0.96998 * 120.00410 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.12924 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.87518 * 179.68060 * 11 10 9 29 29 H 1.07999 * 119.74168 * 180.02562 * 12 11 10 30 30 H 1.08001 * 119.87227 * 180.02562 * 13 12 11 31 31 H 0.97001 * 120.00009 * 243.09329 * 18 15 14 32 32 H 1.09000 * 109.47296 * 285.98473 * 19 18 15 33 33 H 1.08999 * 109.47502 * 45.99157 * 19 18 15 34 34 H 1.09000 * 109.46810 * 299.99892 * 20 19 18 35 35 H 1.08992 * 109.47447 * 59.99753 * 20 19 18 36 36 H 1.08995 * 109.47291 * 299.99989 * 21 20 19 37 37 H 1.09002 * 109.47233 * 59.99602 * 21 20 19 38 38 H 1.09001 * 109.46766 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6962 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0079 -1.2121 0.0005 8 1 3.0714 -1.2217 -0.1872 9 6 1.3225 -2.4240 0.2469 10 6 0.1612 -2.4326 1.0418 11 6 -0.4940 -3.6189 1.2803 12 6 -0.0180 -4.8016 0.7350 13 6 1.1211 -4.8038 -0.0547 14 6 1.7931 -3.6292 -0.3057 15 16 3.2412 -3.6359 -1.3095 16 8 3.0835 -2.5812 -2.2485 17 8 3.4603 -4.9878 -1.6888 18 7 4.5131 -3.2108 -0.3380 19 6 4.8850 -4.0610 0.7956 20 6 6.2681 -3.6527 1.3071 21 6 6.6568 -4.5410 2.4905 22 8 7.9488 -4.1601 2.9678 23 6 8.4085 -4.9318 4.0793 24 9 7.5156 -4.7898 5.1469 25 9 8.4852 -6.2794 3.7114 26 1 -0.4851 0.8400 -0.0004 27 1 -0.2116 -1.5125 1.4669 28 1 -1.3824 -3.6288 1.8943 29 1 -0.5389 -5.7280 0.9271 30 1 1.4827 -5.7308 -0.4747 31 1 5.0093 -2.3967 -0.5171 32 1 4.1528 -3.9425 1.5943 33 1 4.9088 -5.1028 0.4760 34 1 7.0003 -3.7712 0.5084 35 1 6.2444 -2.6110 1.6266 36 1 5.9247 -4.4230 3.2893 37 1 6.6806 -5.5827 2.1706 38 1 9.3951 -4.5808 4.3820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601412771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:49 Heat of formation + Delta-G solvation = -226.991982 kcal Electronic energy + Delta-G solvation = -26835.844329 eV Core-core repulsion = 22439.944979 eV Total energy + Delta-G solvation = -4395.899349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.31562 -47.43208 -38.23544 -37.61285 -36.28221 -35.63227 -34.85260 -33.90912 -31.33746 -30.23407 -29.56955 -26.41677 -25.56244 -24.28660 -21.91746 -21.63082 -21.14256 -18.70560 -18.60732 -18.02831 -17.97223 -17.72216 -16.77637 -16.18472 -15.98714 -15.57062 -15.36789 -14.72182 -14.42908 -14.30060 -14.05568 -13.82485 -13.70730 -13.55299 -13.31530 -13.16132 -12.77410 -12.52037 -12.14813 -11.97382 -11.69041 -11.52502 -11.48180 -11.30667 -11.16640 -11.13963 -11.03776 -10.95060 -10.69372 -10.54450 -10.53279 -9.93449 -9.48672 -9.43938 -8.82532 -8.05746 -7.62558 -7.04620 -4.78499 1.49203 2.31961 2.71653 2.72408 2.95048 2.97860 3.11052 3.40414 3.75783 3.92011 4.23500 4.39233 4.48460 4.69198 4.83828 4.86840 5.00550 5.22434 5.28916 5.42664 5.62865 5.65554 5.83208 6.03256 6.08629 6.22246 6.31403 6.32610 6.40584 6.75330 6.93275 7.06514 7.28431 7.45860 7.50226 7.65189 7.79187 7.87009 8.26559 8.47727 8.62949 9.88063 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.003678 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.851426 B = 7611.596354 C = 8258.622616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.080 3.920 3 Si 0.915 3.085 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.445 4.445 8 H 0.087 0.913 9 C 0.186 3.814 10 C -0.158 4.158 11 C -0.077 4.077 12 C -0.250 4.250 13 C -0.003 4.003 14 C -0.776 4.776 15 S 2.701 3.299 16 O -0.963 6.963 17 O -0.998 6.998 18 N -1.122 6.122 19 C 0.127 3.873 20 C -0.122 4.122 21 C 0.048 3.952 22 O -0.385 6.385 23 C 0.406 3.594 24 F -0.209 7.209 25 F -0.210 7.210 26 H 0.288 0.712 27 H 0.125 0.875 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.412 0.588 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.492 -3.664 7.810 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.141 4.141 3 Si 0.738 3.262 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.473 4.473 8 H 0.105 0.895 9 C 0.181 3.819 10 C -0.178 4.178 11 C -0.096 4.096 12 C -0.271 4.271 13 C -0.023 4.023 14 C -0.872 4.872 15 S 2.798 3.202 16 O -0.953 6.953 17 O -0.988 6.988 18 N -0.879 5.879 19 C 0.000 4.000 20 C -0.160 4.160 21 C -0.028 4.028 22 O -0.307 6.307 23 C 0.314 3.686 24 F -0.191 7.191 25 F -0.192 7.192 26 H 0.099 0.901 27 H 0.143 0.857 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.245 0.755 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 12.355 -3.762 6.841 14.615 hybrid contribution -0.275 0.878 0.805 1.223 sum 12.081 -2.884 7.646 14.585 Atomic orbital electron populations 1.69764 1.07786 1.30264 1.32116 1.25953 0.94893 1.01857 0.91389 0.86226 0.80318 0.79144 0.80557 1.18023 1.19896 1.18386 1.19818 0.96719 0.90827 1.39975 0.89540 1.16999 0.90262 0.89697 0.84916 1.21527 0.98197 0.96824 1.01227 1.20913 0.97518 0.93496 0.97645 1.20495 1.01133 0.96957 1.08471 1.20254 0.93633 0.95110 0.93329 1.29843 1.25667 1.00733 1.30931 1.01084 0.73196 0.72434 0.73465 1.93551 1.85816 1.56502 1.59437 1.93447 1.86075 1.37333 1.81965 1.55668 1.50917 1.36027 1.45251 1.20953 0.95291 0.94536 0.89219 1.21668 0.97111 1.00617 0.96644 1.22702 0.82874 0.99692 0.97565 1.88387 1.36740 1.58277 1.47293 1.23138 0.92773 0.75422 0.77275 1.93074 1.72692 1.95321 1.58029 1.93066 1.96884 1.37636 1.91620 0.90052 0.85684 0.88814 0.88735 0.87413 0.75487 0.91228 0.90578 0.90103 0.89860 0.91121 0.91283 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.89 10.85 55.55 0.60 -18.28 16 2 C 0.08 1.91 5.24 -17.34 -0.09 1.81 16 3 Si 0.91 17.67 29.58 -169.99 -5.03 12.65 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.45 -10.95 7.63 -37.74 -0.29 -11.24 16 8 H 0.09 1.97 5.82 -52.48 -0.31 1.66 16 9 C 0.19 4.66 5.55 -106.83 -0.59 4.06 16 10 C -0.16 -3.85 8.66 -38.87 -0.34 -4.19 16 11 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 12 C -0.25 -5.40 10.05 -39.29 -0.39 -5.80 16 13 C 0.00 -0.08 9.53 -39.66 -0.38 -0.45 16 14 C -0.78 -18.24 5.90 -38.88 -0.23 -18.47 16 15 S 2.70 57.88 4.96 -107.50 -0.53 57.34 16 16 O -0.96 -23.63 16.52 -57.17 -0.94 -24.58 16 17 O -1.00 -22.33 16.53 -57.17 -0.94 -23.27 16 18 N -1.12 -18.66 5.14 -10.61 -0.05 -18.71 16 19 C 0.13 1.78 6.19 -4.04 -0.02 1.76 16 20 C -0.12 -1.37 5.72 -26.73 -0.15 -1.52 16 21 C 0.05 0.51 5.66 37.15 0.21 0.72 16 22 O -0.39 -3.94 10.64 -35.23 -0.37 -4.31 16 23 C 0.41 3.26 6.30 101.05 0.64 3.90 16 24 F -0.21 -2.09 16.88 2.25 0.04 -2.05 16 25 F -0.21 -2.04 16.88 2.25 0.04 -2.00 16 26 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 27 H 0.13 3.08 6.21 -52.49 -0.33 2.75 16 28 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.11 2.22 7.32 -52.49 -0.38 1.84 16 31 H 0.41 6.02 8.48 -34.47 -0.29 5.73 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.04 7.82 -51.93 -0.41 0.64 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.74 7.73 -51.93 -0.40 0.34 16 37 H 0.07 0.70 7.73 -51.93 -0.40 0.29 16 38 H 0.17 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 343.85 15.07 5.18 5.18 Total: -1.00 -31.39 343.85 -8.25 -39.64 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.19 Total: 9.91 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: -2.04 Total: -31.52 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.55 Total: -37.00 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -2.26 Total: -52.16 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.08 Total: -4.05 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 16 Polarization: 57.88 SS G_CDS: -0.53 Total: 57.34 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.39 -8.25 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601412771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.355 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds