Wall clock time and date at job start Tue Mar 31 2020 19:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86801 * 120.00227 * 2 1 4 4 H 1.48499 * 109.46783 * 239.99866 * 3 2 1 5 5 H 1.48497 * 109.46986 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47316 * 119.99689 * 3 2 1 7 7 C 1.39954 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99577 * 168.41872 * 7 2 1 9 9 C 1.41388 * 120.00303 * 348.42083 * 7 2 1 10 10 C 1.40736 * 120.24290 * 331.72236 * 9 7 2 11 11 C 1.37604 * 119.74304 * 180.31937 * 10 9 7 12 12 C 1.38658 * 120.24632 * 359.66246 * 11 10 9 13 13 C 1.38609 * 120.50091 * 0.02562 * 12 11 10 14 14 C 1.37634 * 120.25011 * 0.02562 * 13 12 11 15 15 S 1.76201 * 120.12642 * 179.97438 * 14 13 12 16 16 O 1.42094 * 106.40432 * 132.26743 * 15 14 13 17 17 O 1.42104 * 106.40266 * 359.34878 * 15 14 13 18 18 N 1.65603 * 107.21941 * 245.80778 * 15 14 13 19 19 C 1.46498 * 119.99589 * 62.81089 * 18 15 14 20 20 C 1.53008 * 109.46909 * 165.98878 * 19 18 15 21 21 C 1.52995 * 109.47271 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.47220 * 179.97438 * 21 20 19 23 23 C 1.42900 * 113.99742 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.47548 * 300.00162 * 23 22 21 25 25 F 1.39897 * 109.47040 * 60.00729 * 23 22 21 26 26 H 0.96998 * 120.00410 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.12924 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.87518 * 179.68060 * 11 10 9 29 29 H 1.07999 * 119.74168 * 180.02562 * 12 11 10 30 30 H 1.08001 * 119.87227 * 180.02562 * 13 12 11 31 31 H 0.97001 * 120.00009 * 243.09329 * 18 15 14 32 32 H 1.09000 * 109.47296 * 285.98473 * 19 18 15 33 33 H 1.08999 * 109.47502 * 45.99157 * 19 18 15 34 34 H 1.09000 * 109.46810 * 299.99892 * 20 19 18 35 35 H 1.08992 * 109.47447 * 59.99753 * 20 19 18 36 36 H 1.08995 * 109.47291 * 299.99989 * 21 20 19 37 37 H 1.09002 * 109.47233 * 59.99602 * 21 20 19 38 38 H 1.09001 * 109.46766 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6962 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0079 -1.2121 0.0005 8 1 3.0714 -1.2217 -0.1872 9 6 1.3225 -2.4240 0.2469 10 6 0.1612 -2.4326 1.0418 11 6 -0.4940 -3.6189 1.2803 12 6 -0.0180 -4.8016 0.7350 13 6 1.1211 -4.8038 -0.0547 14 6 1.7931 -3.6292 -0.3057 15 16 3.2412 -3.6359 -1.3095 16 8 3.0835 -2.5812 -2.2485 17 8 3.4603 -4.9878 -1.6888 18 7 4.5131 -3.2108 -0.3380 19 6 4.8850 -4.0610 0.7956 20 6 6.2681 -3.6527 1.3071 21 6 6.6568 -4.5410 2.4905 22 8 7.9488 -4.1601 2.9678 23 6 8.4085 -4.9318 4.0793 24 9 7.5156 -4.7898 5.1469 25 9 8.4852 -6.2794 3.7114 26 1 -0.4851 0.8400 -0.0004 27 1 -0.2116 -1.5125 1.4669 28 1 -1.3824 -3.6288 1.8943 29 1 -0.5389 -5.7280 0.9271 30 1 1.4827 -5.7308 -0.4747 31 1 5.0093 -2.3967 -0.5171 32 1 4.1528 -3.9425 1.5943 33 1 4.9088 -5.1028 0.4760 34 1 7.0003 -3.7712 0.5084 35 1 6.2444 -2.6110 1.6266 36 1 5.9247 -4.4230 3.2893 37 1 6.6806 -5.5827 2.1706 38 1 9.3951 -4.5808 4.3820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601412771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:48 Heat of formation + Delta-G solvation = -248.830917 kcal Electronic energy + Delta-G solvation = -26836.791336 eV Core-core repulsion = 22439.944979 eV Total energy + Delta-G solvation = -4396.846357 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.00054 -48.13060 -39.37912 -39.02993 -38.04496 -36.83717 -36.66287 -35.66157 -32.44625 -31.97895 -31.34306 -27.40277 -27.19366 -25.16488 -23.45198 -22.99167 -22.76665 -20.27296 -19.50450 -19.35111 -18.76322 -18.72447 -18.32969 -17.82035 -17.28211 -16.93107 -16.72023 -16.03951 -15.94016 -15.32878 -15.20090 -15.05906 -14.91391 -14.64705 -14.48986 -14.46588 -14.42118 -13.69502 -13.48102 -13.27389 -13.06188 -12.99703 -12.94461 -12.85226 -12.76611 -12.66984 -12.52754 -12.37159 -12.23063 -12.14541 -11.66258 -11.36895 -11.17277 -11.12389 -10.27107 -9.83685 -9.42883 -8.78503 -6.61035 -0.17558 0.53622 0.98535 1.37785 1.49315 1.53962 1.99883 2.16690 2.40335 2.64499 2.79260 2.98783 3.48337 3.72570 3.79560 3.81364 3.95189 4.00391 4.10857 4.33871 4.41169 4.44946 4.50849 4.61767 4.68271 4.74313 4.98143 5.09691 5.15562 5.21676 5.31549 5.52518 5.53533 5.71245 5.83051 6.01273 6.08362 6.22516 6.48031 6.67922 6.84201 8.17128 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.003678 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.851426 B = 7611.596354 C = 8258.622616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.038 3.962 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.244 1.244 7 C -0.474 4.474 8 H 0.095 0.905 9 C 0.161 3.839 10 C -0.186 4.186 11 C -0.076 4.076 12 C -0.251 4.251 13 C -0.016 4.016 14 C -0.793 4.793 15 S 2.721 3.279 16 O -0.998 6.998 17 O -1.008 7.008 18 N -1.110 6.110 19 C 0.120 3.880 20 C -0.112 4.112 21 C 0.047 3.953 22 O -0.394 6.394 23 C 0.400 3.600 24 F -0.222 7.222 25 F -0.221 7.221 26 H 0.295 0.705 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.422 0.578 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.880 -3.744 8.688 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.180 4.180 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.168 1.168 7 C -0.502 4.502 8 H 0.113 0.887 9 C 0.157 3.843 10 C -0.206 4.206 11 C -0.095 4.095 12 C -0.271 4.271 13 C -0.036 4.036 14 C -0.887 4.887 15 S 2.817 3.183 16 O -0.988 6.988 17 O -0.999 6.999 18 N -0.871 5.871 19 C -0.006 4.006 20 C -0.151 4.151 21 C -0.029 4.029 22 O -0.316 6.316 23 C 0.310 3.690 24 F -0.204 7.204 25 F -0.203 7.203 26 H 0.106 0.894 27 H 0.132 0.868 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.258 0.742 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 13.725 -3.855 7.734 16.219 hybrid contribution -0.711 0.764 0.564 1.186 sum 13.014 -3.091 8.297 15.741 Atomic orbital electron populations 1.69811 1.09070 1.31443 1.32924 1.26830 0.95649 1.04886 0.90615 0.85321 0.79227 0.75180 0.80741 1.18489 1.18843 1.16771 1.20139 0.97380 0.91523 1.41204 0.88707 1.17314 0.90927 0.90562 0.85500 1.21590 0.99182 0.97402 1.02453 1.21255 0.97981 0.92969 0.97289 1.20895 1.00751 0.98034 1.07445 1.20582 0.93987 0.95424 0.93564 1.30159 1.27046 1.00777 1.30724 1.00314 0.73206 0.71649 0.73085 1.93496 1.86542 1.57578 1.61221 1.93425 1.86253 1.37836 1.82352 1.55248 1.49363 1.36918 1.45541 1.21159 0.96977 0.94341 0.88130 1.21547 0.95398 1.00933 0.97238 1.22619 0.83400 0.99661 0.97239 1.88365 1.36199 1.58871 1.48133 1.23919 0.94112 0.74773 0.76229 1.93048 1.73480 1.95335 1.58567 1.93044 1.96917 1.38647 1.91696 0.89389 0.86762 0.86067 0.85542 0.85892 0.74172 0.91629 0.90172 0.89140 0.89456 0.91327 0.90911 0.76969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.07 10.85 21.83 0.24 -39.83 16 2 C 0.04 1.82 5.24 85.26 0.45 2.27 16 3 Si 0.98 35.90 29.58 68.60 2.03 37.93 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 6 H -0.24 -8.30 7.11 99.48 0.71 -7.59 16 7 C -0.47 -23.67 7.63 23.46 0.18 -23.49 16 8 H 0.10 4.35 5.82 -2.91 -0.02 4.34 16 9 C 0.16 8.21 5.55 -21.29 -0.12 8.09 16 10 C -0.19 -9.23 8.66 22.73 0.20 -9.03 16 11 C -0.08 -3.33 10.02 22.22 0.22 -3.10 16 12 C -0.25 -10.47 10.05 22.46 0.23 -10.24 16 13 C -0.02 -0.70 9.53 22.22 0.21 -0.49 16 14 C -0.79 -37.42 5.90 22.73 0.13 -37.29 16 15 S 2.72 116.44 4.96 -56.49 -0.28 116.16 16 16 O -1.00 -49.52 16.52 -128.00 -2.11 -51.64 16 17 O -1.01 -44.54 16.53 -128.00 -2.12 -46.65 16 18 N -1.11 -36.15 5.14 -187.48 -0.96 -37.12 16 19 C 0.12 3.25 6.19 86.38 0.53 3.78 16 20 C -0.11 -2.34 5.72 30.60 0.18 -2.17 16 21 C 0.05 0.93 5.66 71.98 0.41 1.34 16 22 O -0.39 -7.23 10.64 -148.98 -1.58 -8.82 16 23 C 0.40 5.56 6.30 113.37 0.71 6.27 16 24 F -0.22 -4.09 16.88 44.97 0.76 -3.33 16 25 F -0.22 -3.91 16.88 44.97 0.76 -3.15 16 26 H 0.30 13.14 8.30 -92.71 -0.77 12.37 16 27 H 0.11 5.80 6.21 -2.91 -0.02 5.78 16 28 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 29 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.12 4.93 7.32 -2.91 -0.02 4.91 16 31 H 0.42 11.98 8.48 -96.74 -0.82 11.16 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 2.11 7.82 -2.39 -0.02 2.09 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 1.37 7.73 -2.39 -0.02 1.35 16 37 H 0.07 1.36 7.73 -2.39 -0.02 1.35 16 38 H 0.21 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -67.66 343.85 0.35 -67.31 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.29 Total: 33.20 kcal Atomic # 6 Polarization: -67.39 SS G_CDS: 3.33 Total: -64.06 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -0.73 Total: -76.95 kcal Atomic # 8 Polarization: -101.29 SS G_CDS: -5.81 Total: -107.11 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 1.52 Total: -6.48 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Atomic # 16 Polarization: 116.44 SS G_CDS: -0.28 Total: 116.16 kcal Total: -67.66 0.35 -67.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601412771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.519 kcal (2) G-P(sol) polarization free energy of solvation -67.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds