Wall clock time and date at job start Tue Mar 31 2020 19:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00201 * 2 1 4 4 H 1.48504 * 109.47010 * 239.99666 * 3 2 1 5 5 H 1.48491 * 109.47277 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46933 * 120.00140 * 3 2 1 7 7 C 1.37886 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47340 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.47684 * 180.02562 * 10 9 7 12 12 O 1.42108 * 110.54066 * 68.37180 * 11 10 9 13 13 O 1.42103 * 110.54084 * 291.63121 * 11 10 9 14 14 N 1.65593 * 104.45314 * 180.02562 * 11 10 9 15 15 C 1.46497 * 120.00002 * 64.99997 * 14 11 10 16 16 H 1.09004 * 109.47067 * 352.31953 * 15 14 11 17 17 C 1.52995 * 109.47437 * 112.31749 * 15 14 11 18 18 O 1.42899 * 109.47361 * 64.99622 * 17 15 14 19 19 C 1.50700 * 109.47167 * 232.31863 * 15 14 11 20 20 C 1.38203 * 119.99902 * 341.52478 * 19 15 14 21 21 C 1.38430 * 119.99801 * 180.02562 * 20 19 15 22 22 F 1.35107 * 119.99723 * 180.02562 * 21 20 19 23 23 C 1.38462 * 120.00427 * 359.97438 * 21 20 19 24 24 C 1.38173 * 119.99944 * 0.02562 * 23 21 20 25 25 C 1.38431 * 120.00120 * 161.80788 * 19 15 14 26 26 F 1.35099 * 120.00248 * 0.02562 * 25 19 15 27 27 H 0.97011 * 120.00229 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46984 * 60.00445 * 9 7 2 29 29 H 1.08996 * 109.47340 * 300.00350 * 9 7 2 30 30 H 1.09002 * 109.46823 * 59.99547 * 10 9 7 31 31 H 1.09009 * 109.46931 * 300.00537 * 10 9 7 32 32 H 0.97001 * 119.99968 * 245.00226 * 14 11 10 33 33 H 1.08996 * 109.47504 * 185.00522 * 17 15 14 34 34 H 1.09007 * 109.47055 * 304.99860 * 17 15 14 35 35 H 0.96696 * 113.99993 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.00023 * 0.02562 * 20 19 15 37 37 H 1.07996 * 120.00575 * 179.97438 * 23 21 20 38 38 H 1.07995 * 119.99975 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 16 1.3381 -5.2331 -0.0013 12 8 0.6644 -5.4193 -1.2386 13 8 0.6635 -5.4200 1.2354 14 7 2.5201 -6.3928 -0.0005 15 6 3.4177 -6.5231 1.1500 16 1 3.2483 -5.6952 1.8386 17 6 3.1406 -7.8466 1.8657 18 8 3.4737 -8.9346 1.0012 19 6 4.8482 -6.4980 0.6765 20 6 5.1414 -6.7500 -0.6503 21 6 6.4554 -6.7274 -1.0851 22 9 6.7420 -6.9733 -2.3823 23 6 7.4760 -6.4519 -0.1909 24 6 7.1829 -6.1999 1.1357 25 6 5.8689 -6.2283 1.5718 26 9 5.5829 -5.9880 2.8701 27 1 -0.4851 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8904 29 1 0.6245 -2.5571 0.8896 30 1 2.8717 -3.6044 0.8894 31 1 2.8718 -3.6044 -0.8906 32 1 2.6183 -6.9858 -0.7618 33 1 3.7449 -7.9036 2.7710 34 1 2.0845 -7.9026 2.1299 35 1 3.3225 -9.8067 1.3905 36 1 4.3453 -6.9645 -1.3480 37 1 8.5012 -6.4347 -0.5299 38 1 7.9789 -5.9854 1.8333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611019537.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:12 Heat of formation + Delta-G solvation = -190.173338 kcal Electronic energy + Delta-G solvation = -27259.255033 eV Core-core repulsion = 22864.952260 eV Total energy + Delta-G solvation = -4394.302773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.17894 -49.11487 -39.64603 -37.43519 -36.63276 -35.53039 -35.11789 -33.92102 -31.27826 -31.18819 -30.47751 -28.30216 -25.63704 -24.17091 -23.09241 -21.70891 -21.45209 -19.29349 -18.25941 -17.86649 -17.57422 -17.23679 -17.05527 -16.54651 -16.17120 -16.00366 -15.55422 -15.50671 -15.07640 -14.81329 -14.62056 -14.56306 -14.28407 -13.99069 -13.66201 -13.42554 -12.96275 -12.81793 -12.53964 -12.19955 -12.05619 -11.79267 -11.68502 -11.59578 -11.54061 -11.36316 -11.07925 -10.99619 -10.48281 -10.40394 -10.24293 -9.96340 -9.63534 -9.39348 -9.11896 -8.77130 -8.51279 -6.13599 -4.19288 0.64765 0.69379 0.76936 2.93546 3.09588 3.26766 3.31671 3.33450 3.82277 3.89881 3.92909 4.13966 4.20278 4.35795 4.39112 4.59574 4.66366 4.72058 4.87186 4.99512 5.10106 5.21671 5.29522 5.43740 5.49538 5.59973 5.64895 5.70970 5.74372 5.77625 6.00879 6.44051 6.49535 6.95109 7.27160 7.33125 7.37677 7.79099 8.15654 8.83731 9.45578 10.97377 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011144 B = 0.004036 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.920886 B = 6935.698597 C = 7955.049039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.029 3.971 10 C -0.589 4.589 11 S 2.587 3.413 12 O -0.961 6.961 13 O -0.964 6.964 14 N -1.116 6.116 15 C 0.200 3.800 16 H 0.119 0.881 17 C 0.069 3.931 18 O -0.565 6.565 19 C -0.088 4.088 20 C -0.100 4.100 21 C 0.092 3.908 22 F -0.135 7.135 23 C -0.128 4.128 24 C -0.122 4.122 25 C 0.094 3.906 26 F -0.132 7.132 27 H 0.266 0.734 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.417 0.583 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.380 0.620 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.304 -17.711 3.167 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.723 4.723 11 S 2.685 3.315 12 O -0.952 6.952 13 O -0.954 6.954 14 N -0.873 5.873 15 C 0.091 3.909 16 H 0.136 0.864 17 C -0.011 4.011 18 O -0.371 6.371 19 C -0.091 4.091 20 C -0.119 4.119 21 C 0.073 3.927 22 F -0.113 7.113 23 C -0.146 4.146 24 C -0.141 4.141 25 C 0.074 3.926 26 F -0.110 7.110 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.227 0.773 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.301 -17.203 2.918 21.940 hybrid contribution 1.042 0.584 0.061 1.196 sum 14.343 -16.618 2.979 22.153 Atomic orbital electron populations 1.69939 1.06118 1.27340 1.49424 1.25053 0.94958 0.99507 0.94846 0.86533 0.79511 0.82532 0.78724 1.20068 1.21050 1.20071 1.20953 0.93025 0.89726 1.52363 0.92089 1.18961 0.92621 0.90472 0.98941 1.30476 1.13724 1.17895 1.10199 1.05813 0.74722 0.76594 0.74366 1.93569 1.71355 1.85236 1.45007 1.93553 1.71202 1.84973 1.45631 1.55955 1.51986 1.52234 1.27081 1.19597 0.85035 0.98447 0.87818 0.86374 1.22568 1.00534 0.86056 0.91926 1.86454 1.89675 1.16775 1.44171 1.19842 0.95148 1.00852 0.93230 1.20771 0.95384 0.99991 0.95780 1.17634 0.93569 1.02572 0.78971 1.91531 1.94205 1.91769 1.33824 1.20983 0.99643 1.01528 0.92483 1.20933 0.95113 1.01735 0.96326 1.17425 0.93282 1.03129 0.78735 1.91525 1.94235 1.91845 1.33396 0.92450 0.94776 0.94777 0.86387 0.85898 0.74729 0.92283 0.91272 0.77314 0.83580 0.83760 0.83559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.28 55.43 0.74 -25.58 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 10 C -0.59 -11.05 6.01 37.16 0.22 -10.82 16 11 S 2.59 44.84 5.31 -107.50 -0.57 44.27 16 12 O -0.96 -19.55 18.08 -57.54 -1.04 -20.59 16 13 O -0.96 -19.04 17.76 -57.54 -1.02 -20.06 16 14 N -1.12 -14.29 4.73 -5.88 -0.03 -14.32 16 15 C 0.20 2.32 2.45 -69.09 -0.17 2.15 16 16 H 0.12 1.35 7.39 -51.93 -0.38 0.97 16 17 C 0.07 0.68 6.85 37.16 0.25 0.93 16 18 O -0.57 -5.09 13.09 -35.23 -0.46 -5.55 16 19 C -0.09 -0.97 4.63 -104.56 -0.48 -1.45 16 20 C -0.10 -1.09 9.28 -39.52 -0.37 -1.45 16 21 C 0.09 0.96 7.30 -39.43 -0.29 0.67 16 22 F -0.13 -1.52 17.27 2.25 0.04 -1.48 16 23 C -0.13 -1.10 10.02 -39.52 -0.40 -1.49 16 24 C -0.12 -1.05 10.02 -39.52 -0.40 -1.45 16 25 C 0.09 0.98 7.22 -39.42 -0.28 0.70 16 26 F -0.13 -1.43 16.64 2.25 0.04 -1.39 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.12 1.97 7.87 -51.92 -0.41 1.56 16 31 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 32 H 0.42 4.71 7.20 -34.46 -0.25 4.46 16 33 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.38 1.82 9.12 45.56 0.42 2.23 16 36 H 0.15 1.48 6.21 -52.48 -0.33 1.15 16 37 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -35.54 350.95 -7.95 -43.49 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -3.45 Total: 4.47 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -2.46 Total: -24.67 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.71 Total: -39.90 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -2.52 Total: -46.20 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 44.84 SS G_CDS: -0.57 Total: 44.27 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.54 -7.95 -43.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611019537.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.684 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds