Wall clock time and date at job start Tue Mar 31 2020 19:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00201 * 2 1 4 4 H 1.48504 * 109.47010 * 239.99666 * 3 2 1 5 5 H 1.48491 * 109.47277 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46933 * 120.00140 * 3 2 1 7 7 C 1.37886 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00053 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47340 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.47684 * 180.02562 * 10 9 7 12 12 O 1.42108 * 110.54066 * 68.37180 * 11 10 9 13 13 O 1.42103 * 110.54084 * 291.63121 * 11 10 9 14 14 N 1.65593 * 104.45314 * 180.02562 * 11 10 9 15 15 C 1.46497 * 120.00002 * 64.99997 * 14 11 10 16 16 H 1.09004 * 109.47067 * 352.31953 * 15 14 11 17 17 C 1.52995 * 109.47437 * 112.31749 * 15 14 11 18 18 O 1.42899 * 109.47361 * 64.99622 * 17 15 14 19 19 C 1.50700 * 109.47167 * 232.31863 * 15 14 11 20 20 C 1.38203 * 119.99902 * 341.52478 * 19 15 14 21 21 C 1.38430 * 119.99801 * 180.02562 * 20 19 15 22 22 F 1.35107 * 119.99723 * 180.02562 * 21 20 19 23 23 C 1.38462 * 120.00427 * 359.97438 * 21 20 19 24 24 C 1.38173 * 119.99944 * 0.02562 * 23 21 20 25 25 C 1.38431 * 120.00120 * 161.80788 * 19 15 14 26 26 F 1.35099 * 120.00248 * 0.02562 * 25 19 15 27 27 H 0.97011 * 120.00229 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46984 * 60.00445 * 9 7 2 29 29 H 1.08996 * 109.47340 * 300.00350 * 9 7 2 30 30 H 1.09002 * 109.46823 * 59.99547 * 10 9 7 31 31 H 1.09009 * 109.46931 * 300.00537 * 10 9 7 32 32 H 0.97001 * 119.99968 * 245.00226 * 14 11 10 33 33 H 1.08996 * 109.47504 * 185.00522 * 17 15 14 34 34 H 1.09007 * 109.47055 * 304.99860 * 17 15 14 35 35 H 0.96696 * 113.99993 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.00023 * 0.02562 * 20 19 15 37 37 H 1.07996 * 120.00575 * 179.97438 * 23 21 20 38 38 H 1.07995 * 119.99975 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 16 1.3381 -5.2331 -0.0013 12 8 0.6644 -5.4193 -1.2386 13 8 0.6635 -5.4200 1.2354 14 7 2.5201 -6.3928 -0.0005 15 6 3.4177 -6.5231 1.1500 16 1 3.2483 -5.6952 1.8386 17 6 3.1406 -7.8466 1.8657 18 8 3.4737 -8.9346 1.0012 19 6 4.8482 -6.4980 0.6765 20 6 5.1414 -6.7500 -0.6503 21 6 6.4554 -6.7274 -1.0851 22 9 6.7420 -6.9733 -2.3823 23 6 7.4760 -6.4519 -0.1909 24 6 7.1829 -6.1999 1.1357 25 6 5.8689 -6.2283 1.5718 26 9 5.5829 -5.9880 2.8701 27 1 -0.4851 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8904 29 1 0.6245 -2.5571 0.8896 30 1 2.8717 -3.6044 0.8894 31 1 2.8718 -3.6044 -0.8906 32 1 2.6183 -6.9858 -0.7618 33 1 3.7449 -7.9036 2.7710 34 1 2.0845 -7.9026 2.1299 35 1 3.3225 -9.8067 1.3905 36 1 4.3453 -6.9645 -1.3480 37 1 8.5012 -6.4347 -0.5299 38 1 7.9789 -5.9854 1.8333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611019537.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:11 Heat of formation + Delta-G solvation = -218.071725 kcal Electronic energy + Delta-G solvation = -27260.464798 eV Core-core repulsion = 22864.952260 eV Total energy + Delta-G solvation = -4395.512538 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.96490 -49.92169 -40.43793 -38.34017 -38.02892 -37.06912 -35.99959 -35.90266 -33.14428 -32.13314 -31.24299 -29.12349 -27.60880 -24.93288 -23.92138 -23.55833 -22.30484 -20.53380 -19.43996 -18.88777 -18.54919 -18.36132 -17.97732 -17.86715 -17.22977 -17.07367 -16.89557 -16.53383 -16.38711 -16.26935 -15.69554 -15.36727 -15.20694 -15.08832 -14.73771 -14.46771 -14.39189 -13.83720 -13.74858 -13.61296 -13.26760 -13.17658 -13.09881 -12.96721 -12.90479 -12.81296 -12.55629 -12.24478 -12.21064 -12.11465 -11.76487 -11.27552 -10.95393 -10.63837 -10.62213 -10.12161 -9.54185 -8.25826 -6.39680 -0.77150 -0.09570 0.04220 1.41019 1.44132 1.52314 1.68795 2.34005 2.38104 2.71848 3.05958 3.07776 3.13786 3.19963 3.22509 3.43473 3.66918 3.77924 3.95061 3.99212 4.05548 4.15630 4.22309 4.35481 4.55907 4.68632 4.73973 4.75603 4.95618 5.00965 5.05664 5.15876 5.26087 5.27405 5.68071 5.76517 5.94949 6.06298 6.73331 6.89441 7.30451 8.86186 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.011144 B = 0.004036 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.920886 B = 6935.698597 C = 7955.049039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.022 3.978 10 C -0.590 4.590 11 S 2.619 3.381 12 O -0.993 6.993 13 O -0.988 6.988 14 N -1.098 6.098 15 C 0.187 3.813 16 H 0.118 0.882 17 C 0.072 3.928 18 O -0.575 6.575 19 C -0.095 4.095 20 C -0.113 4.113 21 C 0.078 3.922 22 F -0.143 7.143 23 C -0.119 4.119 24 C -0.115 4.115 25 C 0.084 3.916 26 F -0.136 7.136 27 H 0.267 0.733 28 H 0.007 0.993 29 H 0.010 0.990 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.427 0.573 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.398 0.602 36 H 0.146 0.854 37 H 0.172 0.828 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.181 -18.051 3.669 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.092 0.908 9 C -0.017 4.017 10 C -0.722 4.722 11 S 2.715 3.285 12 O -0.983 6.983 13 O -0.977 6.977 14 N -0.858 5.858 15 C 0.079 3.921 16 H 0.136 0.864 17 C -0.007 4.007 18 O -0.383 6.383 19 C -0.098 4.098 20 C -0.132 4.132 21 C 0.058 3.942 22 F -0.121 7.121 23 C -0.137 4.137 24 C -0.133 4.133 25 C 0.064 3.936 26 F -0.115 7.115 27 H 0.076 0.924 28 H 0.025 0.975 29 H 0.028 0.972 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.265 0.735 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.248 0.752 36 H 0.164 0.836 37 H 0.189 0.811 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 16.192 -17.563 3.420 24.131 hybrid contribution 0.199 0.574 -0.081 0.613 sum 16.390 -16.988 3.339 23.841 Atomic orbital electron populations 1.70086 1.08022 1.28387 1.50759 1.26074 0.95816 1.03738 0.94339 0.85401 0.78191 0.77471 0.79425 1.18921 1.20920 1.18738 1.21465 0.93912 0.90799 1.51706 0.90764 1.18812 0.93509 0.92866 0.96529 1.30376 1.12858 1.16644 1.12289 1.04617 0.74577 0.76263 0.73028 1.93519 1.72755 1.85680 1.46368 1.93519 1.72287 1.85297 1.46646 1.55431 1.51481 1.50705 1.28178 1.19876 0.85282 0.99731 0.87188 0.86401 1.22474 1.00480 0.85534 0.92255 1.86412 1.89655 1.17738 1.44533 1.19736 0.94724 1.01895 0.93475 1.20828 0.95876 1.00625 0.95840 1.17847 0.93995 1.03300 0.79009 1.91511 1.94232 1.91944 1.34439 1.21295 1.00487 0.99875 0.92063 1.21251 0.94997 1.00322 0.96744 1.17617 0.93961 1.03532 0.78496 1.91516 1.94348 1.91938 1.33650 0.92373 0.97475 0.97183 0.84152 0.84057 0.73519 0.90535 0.91941 0.75170 0.83612 0.81095 0.80794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.28 21.45 0.28 -56.23 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.54 -29.76 9.11 25.60 0.23 -29.53 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.02 1.13 4.98 29.85 0.15 1.28 16 10 C -0.59 -22.02 6.01 71.98 0.43 -21.59 16 11 S 2.62 91.29 5.31 -56.49 -0.30 90.99 16 12 O -0.99 -41.02 18.08 -127.65 -2.31 -43.33 16 13 O -0.99 -39.43 17.76 -127.65 -2.27 -41.70 16 14 N -1.10 -27.26 4.73 -172.53 -0.82 -28.07 16 15 C 0.19 4.11 2.45 44.24 0.11 4.22 16 16 H 0.12 2.57 7.39 -2.38 -0.02 2.55 16 17 C 0.07 1.31 6.85 71.98 0.49 1.81 16 18 O -0.58 -9.35 13.09 -148.98 -1.95 -11.30 16 19 C -0.10 -1.94 4.63 -19.83 -0.09 -2.03 16 20 C -0.11 -2.28 9.28 22.31 0.21 -2.07 16 21 C 0.08 1.48 7.30 22.37 0.16 1.64 16 22 F -0.14 -3.01 17.27 44.97 0.78 -2.23 16 23 C -0.12 -1.68 10.02 22.31 0.22 -1.46 16 24 C -0.11 -1.60 10.02 22.31 0.22 -1.38 16 25 C 0.08 1.55 7.22 22.37 0.16 1.72 16 26 F -0.14 -2.66 16.64 44.97 0.75 -1.91 16 27 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 28 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.14 4.55 7.87 -2.39 -0.02 4.53 16 31 H 0.14 4.70 8.14 -2.39 -0.02 4.69 16 32 H 0.43 9.28 7.20 -96.75 -0.70 8.58 16 33 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 34 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.40 3.04 9.12 -74.06 -0.68 2.37 16 36 H 0.15 2.82 6.21 -2.91 -0.02 2.80 16 37 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 38 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -77.18 350.95 -1.28 -78.46 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -0.24 Total: 17.19 kcal Atomic # 6 Polarization: -49.75 SS G_CDS: 2.77 Total: -46.99 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -0.53 Total: -84.30 kcal Atomic # 8 Polarization: -89.81 SS G_CDS: -6.52 Total: -96.33 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 1.52 Total: -4.14 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 91.29 SS G_CDS: -0.30 Total: 90.99 kcal Total: -77.18 -1.28 -78.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611019537.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.612 kcal (2) G-P(sol) polarization free energy of solvation -77.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds