Wall clock time and date at job start Tue Mar 31 2020 19:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 120.00294 * 2 1 4 4 H 1.48507 * 109.47025 * 239.99503 * 3 2 1 5 5 H 1.48491 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47087 * 119.99791 * 3 2 1 7 7 C 1.39949 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00124 * 162.22935 * 7 2 1 9 9 C 1.41397 * 119.99974 * 342.23129 * 7 2 1 10 10 C 1.40735 * 120.24451 * 335.27054 * 9 7 2 11 11 C 1.37596 * 119.74341 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.25213 * 359.72306 * 11 10 9 13 13 C 1.38618 * 120.49866 * 0.55551 * 12 11 10 14 14 S 1.76200 * 119.87501 * 179.72055 * 13 12 11 15 15 O 1.42099 * 106.40233 * 156.18932 * 14 13 12 16 16 O 1.42093 * 106.40246 * 23.26774 * 14 13 12 17 17 N 1.65599 * 107.21533 * 269.72574 * 14 13 12 18 18 C 1.46499 * 119.99999 * 65.00550 * 17 14 13 19 19 C 1.50701 * 109.47223 * 164.99419 * 18 17 14 20 20 C 1.38244 * 119.97721 * 269.72628 * 19 18 17 21 21 C 1.38202 * 120.02495 * 179.72467 * 20 19 18 22 22 C 1.38456 * 119.97326 * 0.57020 * 21 20 19 23 23 F 1.35104 * 120.02337 * 179.68194 * 22 21 20 24 24 C 1.38458 * 119.95158 * 359.70314 * 22 21 20 25 25 C 1.38204 * 119.97101 * 359.97438 * 24 22 21 26 26 C 1.37634 * 120.24536 * 359.44835 * 13 12 11 27 27 H 0.96996 * 119.99311 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.12829 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.87614 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.75506 * 180.30146 * 12 11 10 31 31 H 0.97000 * 120.00082 * 244.99765 * 17 14 13 32 32 H 1.09003 * 109.47136 * 44.99804 * 18 17 14 33 33 H 1.08997 * 109.47225 * 284.99562 * 18 17 14 34 34 H 1.07999 * 119.98575 * 359.97438 * 20 19 18 35 35 H 1.07997 * 120.01044 * 180.25373 * 21 20 19 36 36 H 1.07997 * 120.01390 * 179.97438 * 24 22 21 37 37 H 1.08008 * 119.98461 * 179.97438 * 25 24 22 38 38 H 1.08003 * 120.12642 * 180.25318 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0962 1.6962 -1.2125 5 1 1.2775 2.7464 -0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0493 -1.2346 -0.2849 9 6 1.3515 -2.4072 0.3748 10 6 0.2233 -2.3630 1.2149 11 6 -0.4073 -3.5324 1.5731 12 6 0.0613 -4.7504 1.1049 13 6 1.1750 -4.8063 0.2815 14 16 1.7608 -6.3637 -0.2981 15 8 2.4868 -6.1007 -1.4910 16 8 0.6552 -7.2545 -0.2415 17 7 2.8629 -6.9153 0.8080 18 6 2.4317 -7.2494 2.1677 19 6 3.5051 -8.0569 2.8509 20 6 3.4935 -9.4365 2.7621 21 6 4.4806 -10.1778 3.3836 22 6 5.4747 -9.5388 4.1050 23 9 6.4365 -10.2628 4.7183 24 6 5.4821 -8.1574 4.1980 25 6 4.4978 -7.4179 3.5702 26 6 1.8216 -3.6493 -0.0896 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1461 -1.4150 1.5772 29 1 -1.2735 -3.5010 2.2174 30 1 -0.4427 -5.6629 1.3871 31 1 3.7939 -7.0173 0.5556 32 1 1.5113 -7.8316 2.1242 33 1 2.2550 -6.3317 2.7286 34 1 2.7150 -9.9349 2.2036 35 1 4.4736 -11.2552 3.3106 36 1 6.2568 -7.6580 4.7608 37 1 4.5031 -6.3402 3.6429 38 1 2.6867 -3.6948 -0.7345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619472788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:01 Heat of formation + Delta-G solvation = -83.117461 kcal Electronic energy + Delta-G solvation = -25211.386446 eV Core-core repulsion = 21252.495189 eV Total energy + Delta-G solvation = -3958.891257 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.13868 -39.47598 -37.67607 -36.71462 -35.35532 -35.20305 -33.87416 -31.40507 -30.72035 -30.11247 -29.82895 -25.65017 -25.47311 -23.31578 -21.96136 -21.70639 -21.01104 -19.18828 -18.03321 -17.94416 -17.22255 -16.63082 -16.32817 -15.93215 -15.81754 -15.29258 -15.18432 -14.82463 -14.46556 -14.13434 -13.96787 -13.74294 -13.50702 -13.37685 -12.88524 -12.71570 -12.60300 -12.10324 -11.95152 -11.61317 -11.57165 -11.41129 -11.39701 -11.34251 -11.26517 -11.09600 -10.88803 -10.64616 -9.86443 -9.73504 -9.38233 -9.37371 -9.24204 -8.90380 -8.07593 -7.73875 -6.95278 -4.56793 0.69216 0.96784 1.09329 2.15757 2.60839 2.97685 2.99518 3.05355 3.22866 3.66205 3.80575 3.99274 4.19010 4.38526 4.45190 4.46853 4.63142 4.93384 5.00945 5.04221 5.31532 5.39060 5.46136 5.68053 5.75932 5.85040 5.87949 5.96372 6.03128 6.14254 6.28434 6.60979 6.62493 6.72578 6.80296 6.99744 7.12272 7.19072 7.34618 7.68806 7.76923 7.90854 8.36468 8.63687 8.68250 10.00410 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014912 B = 0.002904 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.286639 B = 9640.249427 C =10594.176064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.092 3.908 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.150 4.150 13 C -0.631 4.631 14 S 2.689 3.311 15 O -0.970 6.970 16 O -0.974 6.974 17 N -1.119 6.119 18 C 0.160 3.840 19 C -0.104 4.104 20 C -0.073 4.073 21 C -0.157 4.157 22 C 0.099 3.901 23 F -0.142 7.142 24 C -0.156 4.156 25 C -0.072 4.072 26 C -0.125 4.125 27 H 0.284 0.716 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.415 0.585 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.706 -12.116 8.363 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.088 3.912 10 C -0.138 4.138 11 C -0.140 4.140 12 C -0.171 4.171 13 C -0.723 4.723 14 S 2.785 3.215 15 O -0.960 6.960 16 O -0.964 6.964 17 N -0.876 5.876 18 C 0.034 3.966 19 C -0.105 4.105 20 C -0.091 4.091 21 C -0.176 4.176 22 C 0.079 3.921 23 F -0.121 7.121 24 C -0.174 4.174 25 C -0.091 4.091 26 C -0.146 4.146 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.248 0.752 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.081 -12.424 7.635 15.800 hybrid contribution 0.817 1.287 0.465 1.594 sum 6.897 -11.136 8.100 15.402 Atomic orbital electron populations 1.69774 1.07676 1.29797 1.34545 1.25943 0.94787 1.01577 0.92044 0.86284 0.80114 0.79779 0.80153 1.18799 1.20232 1.18697 1.19584 0.98358 0.91024 1.40061 0.89957 1.17678 0.91834 0.92013 0.89648 1.21642 0.97604 0.97130 0.97384 1.20813 0.99329 0.93173 1.00696 1.20091 0.97301 0.97483 1.02220 1.29714 1.09128 1.17824 1.15660 1.01682 0.72752 0.74492 0.72573 1.93547 1.72766 1.86247 1.43485 1.93509 1.52372 1.64101 1.86433 1.55683 1.24231 1.83441 1.24284 1.20148 0.95478 0.99018 0.81950 1.19977 0.97409 0.93912 0.99248 1.21053 0.97691 0.93196 0.97196 1.21155 0.95286 1.01084 1.00045 1.17793 0.88164 0.89681 0.96453 1.91500 1.61747 1.77842 1.80965 1.21174 1.01264 0.92011 1.02999 1.21085 0.92511 1.00741 0.94741 1.20748 1.01102 0.91719 1.01060 0.90453 0.85793 0.88366 0.87545 0.75175 0.89253 0.90073 0.84474 0.84648 0.84586 0.84287 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.49 10.97 55.55 0.61 -18.88 16 2 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 3 Si 0.91 17.73 29.60 -169.99 -5.03 12.70 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.46 -11.58 9.05 -37.74 -0.34 -11.92 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.09 2.31 5.57 -106.82 -0.60 1.71 16 10 C -0.12 -2.84 8.70 -38.87 -0.34 -3.18 16 11 C -0.12 -2.60 10.02 -39.66 -0.40 -3.00 16 12 C -0.15 -3.08 9.53 -39.29 -0.37 -3.46 16 13 C -0.63 -13.14 5.94 -39.66 -0.24 -13.37 16 14 S 2.69 47.68 5.74 -107.50 -0.62 47.07 16 15 O -0.97 -19.84 17.27 -57.17 -0.99 -20.83 16 16 O -0.97 -18.84 16.73 -57.17 -0.96 -19.79 16 17 N -1.12 -14.59 5.99 -11.66 -0.07 -14.65 16 18 C 0.16 1.80 6.35 -5.19 -0.03 1.77 16 19 C -0.10 -1.02 5.28 -104.62 -0.55 -1.58 16 20 C -0.07 -0.66 9.70 -39.59 -0.38 -1.05 16 21 C -0.16 -1.40 10.03 -39.51 -0.40 -1.79 16 22 C 0.10 0.96 7.30 -39.42 -0.29 0.68 16 23 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 24 C -0.16 -1.41 10.03 -39.51 -0.40 -1.81 16 25 C -0.07 -0.67 9.70 -39.59 -0.38 -1.05 16 26 C -0.12 -2.90 9.26 -38.87 -0.36 -3.26 16 27 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 28 H 0.12 3.05 6.18 -52.49 -0.32 2.73 16 29 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.11 1.95 7.59 -52.49 -0.40 1.55 16 31 H 0.41 4.65 8.64 -34.47 -0.30 4.35 16 32 H 0.09 0.97 7.69 -51.93 -0.40 0.57 16 33 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.14 1.14 8.06 -52.48 -0.42 0.71 16 38 H 0.11 2.49 7.60 -52.48 -0.40 2.09 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -30.32 348.75 -10.82 -41.15 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -3.90 Total: 9.05 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: -5.16 Total: -39.61 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.54 Total: -33.53 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.94 Total: -40.62 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Atomic # 16 Polarization: 47.68 SS G_CDS: -0.62 Total: 47.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.32 -10.82 -41.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619472788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.972 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds