Wall clock time and date at job start Tue Mar 31 2020 19:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 120.00294 * 2 1 4 4 H 1.48507 * 109.47025 * 239.99503 * 3 2 1 5 5 H 1.48491 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47087 * 119.99791 * 3 2 1 7 7 C 1.39949 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00124 * 162.22935 * 7 2 1 9 9 C 1.41397 * 119.99974 * 342.23129 * 7 2 1 10 10 C 1.40735 * 120.24451 * 335.27054 * 9 7 2 11 11 C 1.37596 * 119.74341 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.25213 * 359.72306 * 11 10 9 13 13 C 1.38618 * 120.49866 * 0.55551 * 12 11 10 14 14 S 1.76200 * 119.87501 * 179.72055 * 13 12 11 15 15 O 1.42099 * 106.40233 * 156.18932 * 14 13 12 16 16 O 1.42093 * 106.40246 * 23.26774 * 14 13 12 17 17 N 1.65599 * 107.21533 * 269.72574 * 14 13 12 18 18 C 1.46499 * 119.99999 * 65.00550 * 17 14 13 19 19 C 1.50701 * 109.47223 * 164.99419 * 18 17 14 20 20 C 1.38244 * 119.97721 * 269.72628 * 19 18 17 21 21 C 1.38202 * 120.02495 * 179.72467 * 20 19 18 22 22 C 1.38456 * 119.97326 * 0.57020 * 21 20 19 23 23 F 1.35104 * 120.02337 * 179.68194 * 22 21 20 24 24 C 1.38458 * 119.95158 * 359.70314 * 22 21 20 25 25 C 1.38204 * 119.97101 * 359.97438 * 24 22 21 26 26 C 1.37634 * 120.24536 * 359.44835 * 13 12 11 27 27 H 0.96996 * 119.99311 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.12829 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.87614 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.75506 * 180.30146 * 12 11 10 31 31 H 0.97000 * 120.00082 * 244.99765 * 17 14 13 32 32 H 1.09003 * 109.47136 * 44.99804 * 18 17 14 33 33 H 1.08997 * 109.47225 * 284.99562 * 18 17 14 34 34 H 1.07999 * 119.98575 * 359.97438 * 20 19 18 35 35 H 1.07997 * 120.01044 * 180.25373 * 21 20 19 36 36 H 1.07997 * 120.01390 * 179.97438 * 24 22 21 37 37 H 1.08008 * 119.98461 * 179.97438 * 25 24 22 38 38 H 1.08003 * 120.12642 * 180.25318 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0962 1.6962 -1.2125 5 1 1.2775 2.7464 -0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0493 -1.2346 -0.2849 9 6 1.3515 -2.4072 0.3748 10 6 0.2233 -2.3630 1.2149 11 6 -0.4073 -3.5324 1.5731 12 6 0.0613 -4.7504 1.1049 13 6 1.1750 -4.8063 0.2815 14 16 1.7608 -6.3637 -0.2981 15 8 2.4868 -6.1007 -1.4910 16 8 0.6552 -7.2545 -0.2415 17 7 2.8629 -6.9153 0.8080 18 6 2.4317 -7.2494 2.1677 19 6 3.5051 -8.0569 2.8509 20 6 3.4935 -9.4365 2.7621 21 6 4.4806 -10.1778 3.3836 22 6 5.4747 -9.5388 4.1050 23 9 6.4365 -10.2628 4.7183 24 6 5.4821 -8.1574 4.1980 25 6 4.4978 -7.4179 3.5702 26 6 1.8216 -3.6493 -0.0896 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1461 -1.4150 1.5772 29 1 -1.2735 -3.5010 2.2174 30 1 -0.4427 -5.6629 1.3871 31 1 3.7939 -7.0173 0.5556 32 1 1.5113 -7.8316 2.1242 33 1 2.2550 -6.3317 2.7286 34 1 2.7150 -9.9349 2.2036 35 1 4.4736 -11.2552 3.3106 36 1 6.2568 -7.6580 4.7608 37 1 4.5031 -6.3402 3.6429 38 1 2.6867 -3.6948 -0.7345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619472788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:00 Heat of formation + Delta-G solvation = -101.204917 kcal Electronic energy + Delta-G solvation = -25212.170777 eV Core-core repulsion = 21252.495189 eV Total energy + Delta-G solvation = -3959.675588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.90376 -40.20918 -39.42040 -38.24510 -36.88643 -36.22136 -35.64476 -32.08871 -31.89189 -31.60232 -31.53513 -27.33351 -26.48486 -24.00562 -23.64526 -22.80359 -22.46081 -20.62274 -19.62635 -18.74675 -18.49067 -17.73682 -17.48435 -17.35763 -16.80643 -16.58712 -16.53898 -16.26566 -15.68478 -15.22342 -15.03859 -14.91660 -14.76869 -14.42562 -14.28813 -13.79835 -13.73400 -13.63229 -13.24281 -13.15719 -13.04924 -13.02801 -12.98009 -12.83975 -12.54701 -12.35847 -12.20341 -11.95235 -11.54747 -11.36155 -11.12267 -10.46306 -10.05629 -9.83640 -9.64603 -9.53390 -8.71942 -6.43740 -0.53351 0.12821 0.28737 0.43548 0.87094 1.38016 1.47342 1.50783 2.14575 2.19123 2.56382 2.65993 2.83549 3.27992 3.46437 3.54215 3.69152 3.78580 3.99411 4.22582 4.31942 4.34567 4.48009 4.49086 4.67465 4.86733 4.88725 4.93208 5.01258 5.02480 5.09353 5.16695 5.22120 5.26005 5.43619 5.55419 5.59163 5.90975 5.91472 5.95904 6.09590 6.13425 6.54565 6.81620 6.86727 8.26061 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.014912 B = 0.002904 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.286639 B = 9640.249427 C =10594.176064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.500 4.500 8 H 0.080 0.920 9 C 0.062 3.938 10 C -0.141 4.141 11 C -0.123 4.123 12 C -0.145 4.145 13 C -0.637 4.637 14 S 2.722 3.278 15 O -0.997 6.997 16 O -0.984 6.984 17 N -1.101 6.101 18 C 0.153 3.847 19 C -0.109 4.109 20 C -0.074 4.074 21 C -0.157 4.157 22 C 0.085 3.915 23 F -0.149 7.149 24 C -0.158 4.158 25 C -0.075 4.075 26 C -0.145 4.145 27 H 0.291 0.709 28 H 0.111 0.889 29 H 0.127 0.873 30 H 0.136 0.864 31 H 0.426 0.574 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -13.198 9.198 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.529 4.529 8 H 0.098 0.902 9 C 0.059 3.941 10 C -0.160 4.160 11 C -0.142 4.142 12 C -0.165 4.165 13 C -0.726 4.726 14 S 2.815 3.185 15 O -0.988 6.988 16 O -0.974 6.974 17 N -0.864 5.864 18 C 0.028 3.972 19 C -0.111 4.111 20 C -0.093 4.093 21 C -0.175 4.175 22 C 0.066 3.934 23 F -0.127 7.127 24 C -0.177 4.177 25 C -0.094 4.094 26 C -0.166 4.166 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.145 0.855 30 H 0.154 0.846 31 H 0.262 0.738 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.353 -13.487 8.478 17.150 hybrid contribution 0.722 1.419 0.268 1.614 sum 7.074 -12.068 8.746 16.498 Atomic orbital electron populations 1.69821 1.08997 1.31000 1.35283 1.26761 0.95514 1.04582 0.91067 0.85224 0.78783 0.75446 0.80153 1.18601 1.19203 1.18121 1.19850 0.98650 0.92310 1.42077 0.90176 1.18031 0.92707 0.92956 0.90416 1.21649 0.98271 0.97698 0.98424 1.21154 0.99775 0.92688 1.00575 1.20508 0.96767 0.98247 1.00999 1.30239 1.08817 1.18986 1.14575 1.00710 0.72569 0.73062 0.72180 1.93508 1.73259 1.86381 1.45628 1.93493 1.53597 1.63518 1.86749 1.55290 1.24141 1.82304 1.24618 1.20361 0.96437 0.99714 0.80687 1.19882 0.97337 0.94158 0.99728 1.21237 0.98007 0.92946 0.97079 1.21362 0.94725 1.02082 0.99366 1.18034 0.88429 0.90079 0.96908 1.91484 1.62077 1.78013 1.81167 1.21347 1.01523 0.91918 1.02905 1.21215 0.92347 1.01273 0.94577 1.20821 1.01737 0.92194 1.01826 0.89800 0.87093 0.85525 0.84592 0.73797 0.88384 0.89709 0.83056 0.82933 0.83266 0.83468 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.56 10.97 21.83 0.24 -41.32 16 2 C 0.04 1.75 5.14 85.26 0.44 2.19 16 3 Si 0.98 36.70 29.60 68.60 2.03 38.73 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 5 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 6 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 7 C -0.50 -26.00 9.05 23.46 0.21 -25.79 16 8 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 9 C 0.06 3.22 5.57 -21.29 -0.12 3.10 16 10 C -0.14 -6.93 8.70 22.73 0.20 -6.73 16 11 C -0.12 -5.20 10.02 22.22 0.22 -4.97 16 12 C -0.14 -5.71 9.53 22.46 0.21 -5.50 16 13 C -0.64 -26.07 5.94 22.22 0.13 -25.94 16 14 S 2.72 92.43 5.74 -56.49 -0.32 92.11 16 15 O -1.00 -40.06 17.27 -128.00 -2.21 -42.27 16 16 O -0.98 -35.73 16.73 -128.00 -2.14 -37.87 16 17 N -1.10 -26.47 5.99 -190.79 -1.14 -27.61 16 18 C 0.15 3.08 6.35 85.63 0.54 3.62 16 19 C -0.11 -1.90 5.28 -19.86 -0.10 -2.01 16 20 C -0.07 -1.16 9.70 22.26 0.22 -0.94 16 21 C -0.16 -2.43 10.03 22.31 0.22 -2.21 16 22 C 0.08 1.51 7.30 22.37 0.16 1.68 16 23 F -0.15 -2.93 17.27 44.97 0.78 -2.15 16 24 C -0.16 -2.59 10.03 22.31 0.22 -2.37 16 25 C -0.08 -1.25 9.70 22.26 0.22 -1.03 16 26 C -0.14 -6.85 9.26 22.73 0.21 -6.64 16 27 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 28 H 0.11 5.66 6.18 -2.91 -0.02 5.64 16 29 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 30 H 0.14 4.54 7.59 -2.91 -0.02 4.52 16 31 H 0.43 8.68 8.64 -96.75 -0.84 7.84 16 32 H 0.10 1.84 7.69 -2.39 -0.02 1.82 16 33 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 34 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 37 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.11 5.05 7.60 -2.91 -0.02 5.02 16 Total: -1.00 -65.50 348.75 0.49 -65.01 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.28 Total: 28.93 kcal Atomic # 6 Polarization: -76.54 SS G_CDS: 2.99 Total: -73.55 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -0.90 Total: -68.93 kcal Atomic # 8 Polarization: -75.79 SS G_CDS: -4.35 Total: -80.14 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Atomic # 16 Polarization: 92.43 SS G_CDS: -0.32 Total: 92.11 kcal Total: -65.50 0.49 -65.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619472788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.197 kcal (2) G-P(sol) polarization free energy of solvation -65.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds