Wall clock time and date at job start Tue Mar 31 2020 19:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48506 * 109.46911 * 240.00089 * 3 2 1 5 5 H 1.48505 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47401 * 119.99797 * 3 2 1 7 7 C 1.39942 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00001 * 197.85192 * 7 2 1 9 9 C 1.41396 * 120.00320 * 17.85953 * 7 2 1 10 10 C 1.40737 * 120.24339 * 24.38131 * 9 7 2 11 11 C 1.37590 * 119.74478 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25009 * 0.27757 * 11 10 9 13 13 C 1.38615 * 120.49811 * 359.44001 * 12 11 10 14 14 S 1.76204 * 119.87248 * 180.30317 * 13 12 11 15 15 O 1.42099 * 106.40375 * 23.79537 * 14 13 12 16 16 O 1.42107 * 106.39786 * 156.71610 * 14 13 12 17 17 N 1.65598 * 107.21662 * 270.25342 * 14 13 12 18 18 C 1.46497 * 120.00151 * 65.00735 * 17 14 13 19 19 C 1.52995 * 109.47727 * 164.99927 * 18 17 14 20 20 O 1.42904 * 109.47275 * 64.99207 * 19 18 17 21 21 C 1.42902 * 113.99790 * 180.02562 * 20 19 18 22 22 C 1.53003 * 109.46531 * 180.02562 * 21 20 19 23 23 F 1.39894 * 109.47170 * 299.99604 * 22 21 20 24 24 F 1.39894 * 109.47399 * 60.00003 * 22 21 20 25 25 C 1.37634 * 120.24777 * 0.56062 * 13 12 11 26 26 H 0.96999 * 120.00195 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.12548 * 0.02562 * 10 9 7 28 28 H 1.07999 * 119.87500 * 179.97438 * 11 10 9 29 29 H 1.08005 * 119.74894 * 179.72686 * 12 11 10 30 30 H 0.97001 * 119.99910 * 245.00105 * 17 14 13 31 31 H 1.09010 * 109.47025 * 284.99649 * 18 17 14 32 32 H 1.08996 * 109.47217 * 44.99107 * 18 17 14 33 33 H 1.08990 * 109.47581 * 185.00011 * 19 18 17 34 34 H 1.09006 * 109.46458 * 305.00021 * 19 18 17 35 35 H 1.09004 * 109.46777 * 299.99914 * 21 20 19 36 36 H 1.08990 * 109.47242 * 60.00076 * 21 20 19 37 37 H 1.09006 * 109.46810 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.12583 * 179.74496 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0491 -1.2343 0.2873 9 6 1.3522 -2.4072 -0.3745 10 6 0.2207 -2.3627 -1.2103 11 6 -0.4092 -3.5321 -1.5692 12 6 0.0633 -4.7506 -1.1060 13 6 1.1802 -4.8068 -0.2871 14 16 1.7711 -6.3649 0.2856 15 8 1.3100 -7.3353 -0.6443 16 8 3.1446 -6.1817 0.6011 17 7 1.0014 -6.6853 1.7163 18 6 -0.4485 -6.8936 1.7374 19 6 -0.8533 -7.5288 3.0691 20 8 -0.5873 -6.6136 4.1338 21 6 -0.9308 -7.1121 5.4283 22 6 -0.6057 -6.0543 6.4848 23 9 0.7617 -5.7612 6.4458 24 9 -1.3393 -4.8924 6.2228 25 6 1.8262 -3.6497 0.0848 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1511 -1.4143 -1.5692 28 1 -1.2778 -3.5004 -2.2102 29 1 -0.4401 -5.6633 -1.3893 30 1 1.5106 -6.7351 2.5404 31 1 -0.9550 -5.9351 1.6233 32 1 -0.7326 -7.5544 0.9184 33 1 -1.9171 -7.7653 3.0505 34 1 -0.2805 -8.4432 3.2244 35 1 -1.9963 -7.3401 5.4587 36 1 -0.3595 -8.0176 5.6323 37 1 -0.8681 -6.4344 7.4722 38 1 2.6938 -3.6955 0.7263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619499267.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:11 Heat of formation + Delta-G solvation = -209.990234 kcal Electronic energy + Delta-G solvation = -26612.193096 eV Core-core repulsion = 22217.030998 eV Total energy + Delta-G solvation = -4395.162098 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.01224 -47.05207 -38.45811 -37.59019 -36.63388 -35.27579 -34.99033 -33.80127 -30.59100 -30.03295 -29.74259 -28.24618 -25.44717 -23.19053 -22.71417 -21.83759 -20.93484 -19.11794 -18.12935 -17.92651 -17.60664 -17.17528 -16.72031 -16.34955 -16.19454 -15.86086 -15.40989 -15.09475 -14.74831 -14.37395 -14.04402 -13.80050 -13.42719 -13.39805 -13.32361 -13.15534 -12.78170 -12.53674 -12.45825 -11.92498 -11.84941 -11.57621 -11.50144 -11.35946 -11.31627 -11.18413 -11.09537 -10.97020 -10.83777 -10.59123 -10.04730 -9.76560 -9.63101 -9.30200 -9.11865 -7.99360 -7.65980 -6.88386 -4.48823 1.07737 2.24353 2.68640 3.02166 3.02775 3.05533 3.12239 3.59297 3.68099 3.86876 3.94807 4.21802 4.28237 4.47413 4.59142 4.85713 4.87039 4.90376 5.06223 5.12697 5.19239 5.44786 5.51423 5.76898 6.02884 6.10602 6.21053 6.70638 6.73102 6.80532 6.89335 7.07420 7.24776 7.29623 7.43146 7.76672 7.85483 7.99002 8.44669 8.71345 8.76449 10.07104 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.009186 B = 0.004034 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.287292 B = 6938.638620 C = 8814.386525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.119 4.119 11 C -0.121 4.121 12 C -0.152 4.152 13 C -0.631 4.631 14 S 2.691 3.309 15 O -0.978 6.978 16 O -0.972 6.972 17 N -1.118 6.118 18 C 0.122 3.878 19 C 0.057 3.943 20 O -0.369 6.369 21 C 0.008 3.992 22 C 0.270 3.730 23 F -0.198 7.198 24 F -0.197 7.197 25 C -0.122 4.122 26 H 0.284 0.716 27 H 0.124 0.876 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.417 0.583 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 -12.371 10.709 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.089 3.911 10 C -0.139 4.139 11 C -0.140 4.140 12 C -0.173 4.173 13 C -0.723 4.723 14 S 2.786 3.214 15 O -0.968 6.968 16 O -0.963 6.963 17 N -0.876 5.876 18 C -0.004 4.004 19 C -0.021 4.021 20 O -0.288 6.288 21 C -0.070 4.070 22 C 0.217 3.783 23 F -0.179 7.179 24 F -0.179 7.179 25 C -0.143 4.143 26 H 0.095 0.905 27 H 0.142 0.858 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.251 0.749 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.138 0.862 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.473 -12.562 10.124 17.037 hybrid contribution -0.094 1.348 0.494 1.438 sum -5.568 -11.214 10.617 16.416 Atomic orbital electron populations 1.69778 1.07653 1.29689 1.34761 1.25932 0.94778 1.01532 0.92032 0.86294 0.80119 0.79779 0.80184 1.18691 1.20255 1.18799 1.19600 0.98386 0.91011 1.39932 0.89932 1.17679 0.91784 0.91986 0.89700 1.21624 0.97696 0.97138 0.97430 1.20793 0.99385 0.93173 1.00654 1.20061 0.97183 0.97241 1.02808 1.29717 1.09714 1.18109 1.14721 1.01591 0.72835 0.74674 0.72267 1.93502 1.82326 1.59584 1.61362 1.93539 1.31573 1.87304 1.83847 1.55469 1.16225 1.89124 1.26831 1.21282 0.80822 1.02228 0.96103 1.22805 1.00230 0.92328 0.86737 1.88076 1.85707 1.41625 1.13384 1.23668 1.01869 0.96529 0.84899 1.21986 0.73993 0.82775 0.99581 1.93031 1.32833 1.94287 1.97766 1.93038 1.76797 1.52319 1.95717 1.20785 1.00479 0.91625 1.01431 0.90549 0.85782 0.88442 0.87668 0.74870 0.90153 0.88729 0.91502 0.92094 0.90238 0.90258 0.86160 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.05 10.95 55.55 0.61 -19.44 16 2 C 0.08 1.86 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.51 29.59 -169.99 -5.03 13.47 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.13 9.05 -37.74 -0.34 -12.47 16 8 H 0.08 2.10 7.91 -52.48 -0.41 1.68 16 9 C 0.09 2.44 5.58 -106.82 -0.60 1.84 16 10 C -0.12 -3.02 8.70 -38.87 -0.34 -3.36 16 11 C -0.12 -2.74 10.02 -39.66 -0.40 -3.13 16 12 C -0.15 -3.31 9.53 -39.29 -0.37 -3.68 16 13 C -0.63 -14.03 5.94 -39.66 -0.24 -14.27 16 14 S 2.69 51.09 5.73 -107.50 -0.62 50.47 16 15 O -0.98 -19.63 16.74 -57.17 -0.96 -20.58 16 16 O -0.97 -20.90 17.27 -57.17 -0.99 -21.89 16 17 N -1.12 -16.78 5.96 -10.61 -0.06 -16.85 16 18 C 0.12 1.55 6.61 -4.05 -0.03 1.53 16 19 C 0.06 0.55 6.13 37.15 0.23 0.77 16 20 O -0.37 -4.39 10.03 -35.23 -0.35 -4.75 16 21 C 0.01 0.06 6.16 37.16 0.23 0.29 16 22 C 0.27 2.36 5.63 37.16 0.21 2.57 16 23 F -0.20 -2.43 17.28 2.25 0.04 -2.39 16 24 F -0.20 -2.48 17.28 2.25 0.04 -2.44 16 25 C -0.12 -3.02 9.26 -38.88 -0.36 -3.38 16 26 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 27 H 0.12 3.19 6.16 -52.48 -0.32 2.87 16 28 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.11 2.02 7.61 -52.48 -0.40 1.63 16 30 H 0.42 5.72 8.51 -34.47 -0.29 5.42 16 31 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 32 H 0.09 1.07 7.75 -51.93 -0.40 0.67 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.11 2.68 7.60 -52.49 -0.40 2.28 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -33.94 350.65 -8.46 -42.39 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.33 Total: 8.22 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: -2.09 Total: -31.51 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.55 Total: -36.29 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -2.30 Total: -47.22 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.08 Total: -4.83 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 16 Polarization: 51.09 SS G_CDS: -0.62 Total: 50.47 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.94 -8.46 -42.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499267.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.597 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds