Wall clock time and date at job start Tue Mar 31 2020 19:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48506 * 109.46911 * 240.00089 * 3 2 1 5 5 H 1.48505 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47401 * 119.99797 * 3 2 1 7 7 C 1.39942 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00001 * 197.85192 * 7 2 1 9 9 C 1.41396 * 120.00320 * 17.85953 * 7 2 1 10 10 C 1.40737 * 120.24339 * 24.38131 * 9 7 2 11 11 C 1.37590 * 119.74478 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25009 * 0.27757 * 11 10 9 13 13 C 1.38615 * 120.49811 * 359.44001 * 12 11 10 14 14 S 1.76204 * 119.87248 * 180.30317 * 13 12 11 15 15 O 1.42099 * 106.40375 * 23.79537 * 14 13 12 16 16 O 1.42107 * 106.39786 * 156.71610 * 14 13 12 17 17 N 1.65598 * 107.21662 * 270.25342 * 14 13 12 18 18 C 1.46497 * 120.00151 * 65.00735 * 17 14 13 19 19 C 1.52995 * 109.47727 * 164.99927 * 18 17 14 20 20 O 1.42904 * 109.47275 * 64.99207 * 19 18 17 21 21 C 1.42902 * 113.99790 * 180.02562 * 20 19 18 22 22 C 1.53003 * 109.46531 * 180.02562 * 21 20 19 23 23 F 1.39894 * 109.47170 * 299.99604 * 22 21 20 24 24 F 1.39894 * 109.47399 * 60.00003 * 22 21 20 25 25 C 1.37634 * 120.24777 * 0.56062 * 13 12 11 26 26 H 0.96999 * 120.00195 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.12548 * 0.02562 * 10 9 7 28 28 H 1.07999 * 119.87500 * 179.97438 * 11 10 9 29 29 H 1.08005 * 119.74894 * 179.72686 * 12 11 10 30 30 H 0.97001 * 119.99910 * 245.00105 * 17 14 13 31 31 H 1.09010 * 109.47025 * 284.99649 * 18 17 14 32 32 H 1.08996 * 109.47217 * 44.99107 * 18 17 14 33 33 H 1.08990 * 109.47581 * 185.00011 * 19 18 17 34 34 H 1.09006 * 109.46458 * 305.00021 * 19 18 17 35 35 H 1.09004 * 109.46777 * 299.99914 * 21 20 19 36 36 H 1.08990 * 109.47242 * 60.00076 * 21 20 19 37 37 H 1.09006 * 109.46810 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.12583 * 179.74496 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0491 -1.2343 0.2873 9 6 1.3522 -2.4072 -0.3745 10 6 0.2207 -2.3627 -1.2103 11 6 -0.4092 -3.5321 -1.5692 12 6 0.0633 -4.7506 -1.1060 13 6 1.1802 -4.8068 -0.2871 14 16 1.7711 -6.3649 0.2856 15 8 1.3100 -7.3353 -0.6443 16 8 3.1446 -6.1817 0.6011 17 7 1.0014 -6.6853 1.7163 18 6 -0.4485 -6.8936 1.7374 19 6 -0.8533 -7.5288 3.0691 20 8 -0.5873 -6.6136 4.1338 21 6 -0.9308 -7.1121 5.4283 22 6 -0.6057 -6.0543 6.4848 23 9 0.7617 -5.7612 6.4458 24 9 -1.3393 -4.8924 6.2228 25 6 1.8262 -3.6497 0.0848 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1511 -1.4143 -1.5692 28 1 -1.2778 -3.5004 -2.2102 29 1 -0.4401 -5.6633 -1.3893 30 1 1.5106 -6.7351 2.5404 31 1 -0.9550 -5.9351 1.6233 32 1 -0.7326 -7.5544 0.9184 33 1 -1.9171 -7.7653 3.0505 34 1 -0.2805 -8.4432 3.2244 35 1 -1.9963 -7.3401 5.4587 36 1 -0.3595 -8.0176 5.6323 37 1 -0.8681 -6.4344 7.4722 38 1 2.6938 -3.6955 0.7263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619499267.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:10 Heat of formation + Delta-G solvation = -234.950010 kcal Electronic energy + Delta-G solvation = -26613.275433 eV Core-core repulsion = 22217.030998 eV Total energy + Delta-G solvation = -4396.244435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.79662 -47.87407 -39.44612 -39.20793 -38.25226 -36.90630 -36.08964 -35.66782 -31.91588 -31.58436 -31.29869 -29.12995 -27.35452 -23.83715 -23.70969 -23.54431 -22.78081 -20.64693 -19.67469 -18.76432 -18.55661 -18.34805 -17.75916 -17.68306 -17.29608 -17.03229 -16.82762 -16.52190 -16.36795 -15.76952 -15.24488 -15.05768 -14.88872 -14.66032 -14.31362 -14.25029 -14.13379 -13.77731 -13.69061 -13.31231 -13.20314 -13.16632 -13.07823 -13.03847 -12.85614 -12.80087 -12.58812 -12.22903 -12.16746 -11.76574 -11.57305 -11.35993 -11.14658 -10.69534 -10.44783 -9.84490 -9.56222 -8.73944 -6.46105 -0.46894 0.41220 0.84799 1.35571 1.45364 1.48866 2.12911 2.16880 2.44875 2.55162 2.79336 3.05743 3.43558 3.47445 3.53471 3.65111 3.89815 4.13269 4.23489 4.31664 4.39007 4.44611 4.47872 4.57196 4.59898 4.77298 4.84364 4.90110 5.01059 5.07887 5.19847 5.41273 5.56548 5.88190 5.93394 6.06664 6.10822 6.13246 6.51853 6.78823 6.84348 8.24017 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.009186 B = 0.004034 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.287292 B = 6938.638620 C = 8814.386525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.502 4.502 8 H 0.076 0.924 9 C 0.062 3.938 10 C -0.141 4.141 11 C -0.123 4.123 12 C -0.146 4.146 13 C -0.639 4.639 14 S 2.723 3.277 15 O -0.981 6.981 16 O -0.999 6.999 17 N -1.104 6.104 18 C 0.108 3.892 19 C 0.059 3.941 20 O -0.411 6.411 21 C 0.004 3.996 22 C 0.252 3.748 23 F -0.224 7.224 24 F -0.225 7.225 25 C -0.149 4.149 26 H 0.292 0.708 27 H 0.113 0.887 28 H 0.129 0.871 29 H 0.138 0.862 30 H 0.425 0.575 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.174 0.826 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.081 -14.090 11.402 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.531 4.531 8 H 0.094 0.906 9 C 0.058 3.942 10 C -0.161 4.161 11 C -0.142 4.142 12 C -0.167 4.167 13 C -0.728 4.728 14 S 2.815 3.185 15 O -0.971 6.971 16 O -0.989 6.989 17 N -0.867 5.867 18 C -0.018 4.018 19 C -0.018 4.018 20 O -0.331 6.331 21 C -0.073 4.073 22 C 0.199 3.801 23 F -0.205 7.205 24 F -0.207 7.207 25 C -0.170 4.170 26 H 0.103 0.897 27 H 0.131 0.869 28 H 0.147 0.853 29 H 0.156 0.844 30 H 0.261 0.739 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.191 0.809 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.711 -14.266 10.805 19.113 hybrid contribution 0.189 1.697 0.326 1.738 sum -6.522 -12.569 11.131 18.011 Atomic orbital electron populations 1.69811 1.08894 1.31045 1.34965 1.26744 0.95566 1.04471 0.90978 0.85232 0.78856 0.75461 0.80090 1.18409 1.18678 1.18555 1.19841 0.98545 0.92462 1.42239 0.90563 1.18046 0.92741 0.92873 0.90504 1.21645 0.98239 0.97826 0.98404 1.21170 0.99931 0.92635 1.00450 1.20513 0.96642 0.98176 1.01371 1.30294 1.09188 1.19262 1.14040 1.00693 0.71976 0.73137 0.72702 1.93491 1.82369 1.58750 1.62482 1.93499 1.33675 1.87296 1.84438 1.55165 1.17616 1.88172 1.25722 1.21628 0.78728 1.02211 0.99232 1.22873 1.02330 0.92071 0.84533 1.88016 1.86443 1.43377 1.15310 1.23953 1.04024 0.96700 0.82649 1.22876 0.72307 0.81984 1.02893 1.92972 1.35037 1.94503 1.98023 1.92975 1.77362 1.54242 1.96101 1.20840 1.01219 0.92362 1.02598 0.89700 0.86890 0.85275 0.84435 0.73921 0.91942 0.86921 0.88491 0.89889 0.87529 0.87513 0.80882 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.59 10.95 21.83 0.24 -42.35 16 2 C 0.04 1.93 5.14 85.25 0.44 2.36 16 3 Si 0.98 38.57 29.59 68.60 2.03 40.60 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.50 -27.76 9.05 23.46 0.21 -27.55 16 8 H 0.08 4.12 7.91 -2.91 -0.02 4.09 16 9 C 0.06 3.41 5.58 -21.29 -0.12 3.29 16 10 C -0.14 -7.38 8.70 22.73 0.20 -7.18 16 11 C -0.12 -5.52 10.02 22.22 0.22 -5.30 16 12 C -0.15 -6.22 9.53 22.46 0.21 -6.00 16 13 C -0.64 -28.53 5.94 22.22 0.13 -28.40 16 14 S 2.72 101.02 5.73 -56.49 -0.32 100.69 16 15 O -0.98 -37.28 16.74 -128.00 -2.14 -39.42 16 16 O -1.00 -42.96 17.27 -128.00 -2.21 -45.17 16 17 N -1.10 -31.65 5.96 -187.50 -1.12 -32.77 16 18 C 0.11 2.51 6.61 86.38 0.57 3.08 16 19 C 0.06 0.95 6.13 71.98 0.44 1.40 16 20 O -0.41 -9.00 10.03 -148.98 -1.49 -10.49 16 21 C 0.00 0.04 6.16 71.98 0.44 0.49 16 22 C 0.25 3.97 5.63 71.98 0.41 4.37 16 23 F -0.22 -5.39 17.28 44.97 0.78 -4.61 16 24 F -0.23 -5.57 17.28 44.97 0.78 -4.79 16 25 C -0.15 -7.69 9.26 22.73 0.21 -7.48 16 26 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 27 H 0.11 6.03 6.16 -2.91 -0.02 6.02 16 28 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 29 H 0.14 4.90 7.61 -2.91 -0.02 4.88 16 30 H 0.42 11.16 8.51 -96.75 -0.82 10.34 16 31 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.11 2.20 7.75 -2.39 -0.02 2.18 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.17 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.10 5.36 7.60 -2.91 -0.02 5.33 16 Total: -1.00 -76.67 350.65 0.19 -76.49 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.28 Total: 28.76 kcal Atomic # 6 Polarization: -70.29 SS G_CDS: 3.37 Total: -66.92 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -0.88 Total: -75.12 kcal Atomic # 8 Polarization: -89.24 SS G_CDS: -5.85 Total: -95.09 kcal Atomic # 9 Polarization: -10.96 SS G_CDS: 1.55 Total: -9.40 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Atomic # 16 Polarization: 101.02 SS G_CDS: -0.32 Total: 100.69 kcal Total: -76.67 0.19 -76.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499267.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.464 kcal (2) G-P(sol) polarization free energy of solvation -76.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds