Wall clock time and date at job start Tue Mar 31 2020 19:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 120.00244 * 2 1 4 4 H 1.48499 * 109.47072 * 275.41089 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.40890 * 3 2 1 6 6 H 1.48503 * 109.47306 * 155.40917 * 3 2 1 7 7 C 1.39943 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00134 * 341.73392 * 7 2 1 9 9 C 1.41393 * 120.00104 * 161.73146 * 7 2 1 10 10 C 1.40728 * 120.24409 * 330.21879 * 9 7 2 11 11 C 1.37599 * 119.74473 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24983 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50114 * 359.97438 * 12 11 10 14 14 S 1.76200 * 119.87430 * 180.02562 * 13 12 11 15 15 O 1.42098 * 106.40573 * 23.51570 * 14 13 12 16 16 O 1.42102 * 106.40225 * 156.43875 * 14 13 12 17 17 N 1.65602 * 107.21861 * 269.97605 * 14 13 12 18 18 C 1.46497 * 119.99702 * 65.00139 * 17 14 13 19 19 H 1.08996 * 109.47193 * 334.99767 * 18 17 14 20 20 C 1.53000 * 109.47191 * 95.00625 * 18 17 14 21 21 O 1.42895 * 109.47431 * 64.99425 * 20 18 17 22 22 C 1.53005 * 109.46834 * 215.00252 * 18 17 14 23 23 C 1.53001 * 109.47475 * 65.00126 * 22 18 17 24 24 F 1.39897 * 109.47068 * 174.99671 * 23 22 18 25 25 F 1.39901 * 109.46981 * 295.00117 * 23 22 18 26 26 C 1.37638 * 120.24839 * 0.02562 * 13 12 11 27 27 H 0.97000 * 119.99656 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.13169 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.87466 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.74967 * 180.02562 * 12 11 10 31 31 H 0.97002 * 119.99876 * 245.00478 * 17 14 13 32 32 H 1.09001 * 109.47352 * 185.00344 * 20 18 17 33 33 H 1.09006 * 109.46609 * 304.99516 * 20 18 17 34 34 H 0.96703 * 114.00178 * 180.02562 * 21 20 18 35 35 H 1.09007 * 109.47146 * 185.00506 * 22 18 17 36 36 H 1.09005 * 109.47095 * 304.99344 * 22 18 17 37 37 H 1.08999 * 109.46612 * 54.99838 * 23 22 18 38 38 H 1.07999 * 120.12666 * 180.27497 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3755 2.1123 -1.3938 5 1 1.5016 2.6169 0.8112 6 1 3.5923 1.4098 0.5826 7 6 2.0080 -1.2119 0.0005 8 1 1.5088 -2.1236 0.2941 9 6 3.3684 -1.2430 -0.3833 10 6 3.8635 -0.3117 -1.3149 11 6 5.1892 -0.3516 -1.6815 12 6 6.0361 -1.3050 -1.1372 13 6 5.5593 -2.2272 -0.2187 14 16 6.6503 -3.4312 0.4632 15 8 7.9615 -2.8961 0.3470 16 8 6.0814 -3.8322 1.7021 17 7 6.5971 -4.7576 -0.5269 18 6 7.0856 -4.6631 -1.9048 19 1 7.0235 -3.6285 -2.2422 20 6 8.5407 -5.1322 -1.9633 21 8 8.6072 -6.5209 -1.6330 22 6 6.2277 -5.5476 -2.8118 23 6 4.7983 -5.0034 -2.8510 24 9 4.0429 -5.7427 -3.7674 25 9 4.2239 -5.1097 -1.5798 26 6 4.2370 -2.2060 0.1626 27 1 -0.4849 0.8401 -0.0004 28 1 3.2056 0.4315 -1.7405 29 1 5.5715 0.3624 -2.3960 30 1 7.0752 -1.3287 -1.4303 31 1 6.2424 -5.5970 -0.1945 32 1 8.9318 -4.9788 -2.9691 33 1 9.1357 -4.5604 -1.2510 34 1 9.5021 -6.8868 -1.6497 35 1 6.6444 -5.5474 -3.8191 36 1 6.2184 -6.5659 -2.4229 37 1 4.8162 -3.9570 -3.1553 38 1 3.8686 -2.9226 0.8817 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619499769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:21 Heat of formation + Delta-G solvation = -214.540869 kcal Electronic energy + Delta-G solvation = -28156.898891 eV Core-core repulsion = 23761.539462 eV Total energy + Delta-G solvation = -4395.359429 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.71780 -46.71604 -38.19369 -37.94812 -36.73715 -35.42514 -35.27051 -33.82221 -31.16514 -30.77769 -30.20578 -27.96050 -25.44102 -23.45121 -22.44947 -21.48696 -20.91312 -19.42420 -18.25252 -17.66064 -17.43288 -17.09071 -16.87996 -16.50094 -16.33549 -15.50582 -15.38805 -14.96800 -14.72506 -14.47448 -13.98540 -13.77418 -13.72051 -13.23467 -13.13418 -13.03450 -12.91176 -12.38960 -12.36733 -12.28294 -11.92622 -11.74805 -11.66649 -11.57096 -11.49865 -11.39307 -11.08170 -10.83430 -10.80286 -10.38858 -10.17628 -10.06320 -9.83138 -9.49893 -9.22496 -8.32995 -7.92603 -7.12008 -4.67223 0.85973 1.85866 2.36652 2.96107 3.09060 3.17596 3.33678 3.79836 3.82238 3.98449 4.08976 4.24308 4.39058 4.42178 4.63892 4.79538 4.95986 5.06809 5.12060 5.14475 5.21978 5.45013 5.57827 5.70420 5.76173 5.93366 6.03801 6.16417 6.43043 6.53353 6.82016 7.01258 7.13786 7.15272 7.33578 7.41641 7.58797 7.73256 8.15669 8.38919 8.57841 9.89629 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.004732 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.837117 B = 5916.122049 C = 6741.467353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.083 3.917 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.439 4.439 8 H 0.096 0.904 9 C 0.073 3.927 10 C -0.201 4.201 11 C -0.091 4.091 12 C -0.170 4.170 13 C -0.627 4.627 14 S 2.687 3.313 15 O -0.974 6.974 16 O -0.965 6.965 17 N -1.107 6.107 18 C 0.161 3.839 19 H 0.107 0.893 20 C 0.059 3.941 21 O -0.567 6.567 22 C -0.170 4.170 23 C 0.259 3.741 24 F -0.211 7.211 25 F -0.193 7.193 26 C -0.090 4.090 27 H 0.288 0.712 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.421 0.579 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.378 0.622 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.250 -7.638 -7.596 17.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.467 4.467 8 H 0.114 0.886 9 C 0.069 3.931 10 C -0.221 4.221 11 C -0.110 4.110 12 C -0.191 4.191 13 C -0.718 4.718 14 S 2.782 3.218 15 O -0.963 6.963 16 O -0.956 6.956 17 N -0.866 5.866 18 C 0.053 3.947 19 H 0.124 0.876 20 C -0.021 4.021 21 O -0.373 6.373 22 C -0.210 4.210 23 C 0.205 3.795 24 F -0.192 7.192 25 F -0.174 7.174 26 C -0.111 4.111 27 H 0.099 0.901 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.256 0.744 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.225 0.775 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.864 -7.262 -6.797 16.261 hybrid contribution -0.088 0.721 -0.490 0.876 sum 12.776 -6.541 -7.286 16.097 Atomic orbital electron populations 1.69683 1.08087 1.30579 1.33660 1.26178 0.94782 1.01759 0.90972 0.86360 0.81513 0.79824 0.79005 1.19435 1.21307 1.16630 1.19564 0.92879 0.96460 1.37778 0.88566 1.17792 0.93233 0.91478 0.90574 1.21289 0.95761 1.03409 1.01641 1.20680 0.93826 0.97514 0.98976 1.20029 0.98243 0.99024 1.01773 1.29947 1.10388 1.17315 1.14193 1.01803 0.74081 0.72942 0.72977 1.93514 1.37243 1.79073 1.86519 1.93561 1.79448 1.82169 1.40404 1.55612 1.79158 1.28336 1.23453 1.20732 0.91949 1.00156 0.81867 0.87571 1.22758 0.96414 0.82967 0.99927 1.86460 1.33621 1.23910 1.93263 1.22894 0.92877 1.02747 1.02476 1.21933 0.87267 0.96710 0.73564 1.92965 1.78852 1.80230 1.67158 1.93025 1.86329 1.97290 1.40784 1.20857 0.90419 1.01004 0.98850 0.90127 0.87662 0.87964 0.87163 0.74357 0.92538 0.91358 0.77483 0.87822 0.87894 0.87199 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.47 13.93 55.55 0.77 -19.70 16 2 C 0.08 2.10 5.40 -17.34 -0.09 2.01 16 3 Si 0.91 19.88 24.52 -169.99 -4.17 15.71 16 4 H -0.27 -5.60 6.71 56.52 0.38 -5.22 16 5 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.24 -5.51 6.86 56.52 0.39 -5.12 16 7 C -0.44 -11.42 9.57 -37.74 -0.36 -11.78 16 8 H 0.10 2.63 8.06 -52.48 -0.42 2.20 16 9 C 0.07 1.77 5.10 -106.83 -0.55 1.23 16 10 C -0.20 -4.50 7.18 -38.87 -0.28 -4.78 16 11 C -0.09 -1.77 10.02 -39.66 -0.40 -2.17 16 12 C -0.17 -3.17 8.90 -39.29 -0.35 -3.52 16 13 C -0.63 -12.36 5.81 -39.66 -0.23 -12.59 16 14 S 2.69 46.75 5.65 -107.50 -0.61 46.14 16 15 O -0.97 -17.76 16.48 -57.17 -0.94 -18.70 16 16 O -0.97 -19.78 17.26 -57.17 -0.99 -20.77 16 17 N -1.11 -14.79 4.07 -4.89 -0.02 -14.81 16 18 C 0.16 1.73 2.57 -67.93 -0.17 1.56 16 19 H 0.11 1.07 7.23 -51.93 -0.38 0.70 16 20 C 0.06 0.53 6.88 37.16 0.26 0.79 16 21 O -0.57 -4.95 12.83 -35.23 -0.45 -5.40 16 22 C -0.17 -1.65 4.83 -26.73 -0.13 -1.78 16 23 C 0.26 3.27 5.29 37.16 0.20 3.46 16 24 F -0.21 -2.91 17.34 2.25 0.04 -2.88 16 25 F -0.19 -3.05 15.69 2.25 0.04 -3.02 16 26 C -0.09 -2.03 9.26 -38.87 -0.36 -2.39 16 27 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 28 H 0.11 2.33 4.73 -52.49 -0.25 2.08 16 29 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.11 1.77 7.60 -52.49 -0.40 1.37 16 31 H 0.42 5.27 8.56 -34.47 -0.29 4.98 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.70 7.59 -51.93 -0.39 0.31 16 34 H 0.38 1.72 9.12 45.56 0.42 2.13 16 35 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.10 1.04 7.73 -51.93 -0.40 0.64 16 37 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.12 2.67 7.60 -52.49 -0.40 2.27 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -31.84 338.24 -7.08 -38.92 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.38 Total: 9.38 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: -2.47 Total: -29.97 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.75 Total: -34.51 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -2.38 Total: -44.87 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.07 Total: -5.89 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.17 Total: 15.71 kcal Atomic # 16 Polarization: 46.75 SS G_CDS: -0.61 Total: 46.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.84 -7.08 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.626 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds