Wall clock time and date at job start Tue Mar 31 2020 19:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 120.00244 * 2 1 4 4 H 1.48499 * 109.47072 * 275.41089 * 3 2 1 5 5 H 1.48503 * 109.46947 * 35.40890 * 3 2 1 6 6 H 1.48503 * 109.47306 * 155.40917 * 3 2 1 7 7 C 1.39943 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00134 * 341.73392 * 7 2 1 9 9 C 1.41393 * 120.00104 * 161.73146 * 7 2 1 10 10 C 1.40728 * 120.24409 * 330.21879 * 9 7 2 11 11 C 1.37599 * 119.74473 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24983 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50114 * 359.97438 * 12 11 10 14 14 S 1.76200 * 119.87430 * 180.02562 * 13 12 11 15 15 O 1.42098 * 106.40573 * 23.51570 * 14 13 12 16 16 O 1.42102 * 106.40225 * 156.43875 * 14 13 12 17 17 N 1.65602 * 107.21861 * 269.97605 * 14 13 12 18 18 C 1.46497 * 119.99702 * 65.00139 * 17 14 13 19 19 H 1.08996 * 109.47193 * 334.99767 * 18 17 14 20 20 C 1.53000 * 109.47191 * 95.00625 * 18 17 14 21 21 O 1.42895 * 109.47431 * 64.99425 * 20 18 17 22 22 C 1.53005 * 109.46834 * 215.00252 * 18 17 14 23 23 C 1.53001 * 109.47475 * 65.00126 * 22 18 17 24 24 F 1.39897 * 109.47068 * 174.99671 * 23 22 18 25 25 F 1.39901 * 109.46981 * 295.00117 * 23 22 18 26 26 C 1.37638 * 120.24839 * 0.02562 * 13 12 11 27 27 H 0.97000 * 119.99656 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.13169 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.87466 * 180.02562 * 11 10 9 30 30 H 1.08000 * 119.74967 * 180.02562 * 12 11 10 31 31 H 0.97002 * 119.99876 * 245.00478 * 17 14 13 32 32 H 1.09001 * 109.47352 * 185.00344 * 20 18 17 33 33 H 1.09006 * 109.46609 * 304.99516 * 20 18 17 34 34 H 0.96703 * 114.00178 * 180.02562 * 21 20 18 35 35 H 1.09007 * 109.47146 * 185.00506 * 22 18 17 36 36 H 1.09005 * 109.47095 * 304.99344 * 22 18 17 37 37 H 1.08999 * 109.46612 * 54.99838 * 23 22 18 38 38 H 1.07999 * 120.12666 * 180.27497 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3755 2.1123 -1.3938 5 1 1.5016 2.6169 0.8112 6 1 3.5923 1.4098 0.5826 7 6 2.0080 -1.2119 0.0005 8 1 1.5088 -2.1236 0.2941 9 6 3.3684 -1.2430 -0.3833 10 6 3.8635 -0.3117 -1.3149 11 6 5.1892 -0.3516 -1.6815 12 6 6.0361 -1.3050 -1.1372 13 6 5.5593 -2.2272 -0.2187 14 16 6.6503 -3.4312 0.4632 15 8 7.9615 -2.8961 0.3470 16 8 6.0814 -3.8322 1.7021 17 7 6.5971 -4.7576 -0.5269 18 6 7.0856 -4.6631 -1.9048 19 1 7.0235 -3.6285 -2.2422 20 6 8.5407 -5.1322 -1.9633 21 8 8.6072 -6.5209 -1.6330 22 6 6.2277 -5.5476 -2.8118 23 6 4.7983 -5.0034 -2.8510 24 9 4.0429 -5.7427 -3.7674 25 9 4.2239 -5.1097 -1.5798 26 6 4.2370 -2.2060 0.1626 27 1 -0.4849 0.8401 -0.0004 28 1 3.2056 0.4315 -1.7405 29 1 5.5715 0.3624 -2.3960 30 1 7.0752 -1.3287 -1.4303 31 1 6.2424 -5.5970 -0.1945 32 1 8.9318 -4.9788 -2.9691 33 1 9.1357 -4.5604 -1.2510 34 1 9.5021 -6.8868 -1.6497 35 1 6.6444 -5.5474 -3.8191 36 1 6.2184 -6.5659 -2.4229 37 1 4.8162 -3.9570 -3.1553 38 1 3.8686 -2.9226 0.8817 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619499769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:20 Heat of formation + Delta-G solvation = -240.588337 kcal Electronic energy + Delta-G solvation = -28158.028394 eV Core-core repulsion = 23761.539462 eV Total energy + Delta-G solvation = -4396.488932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.084 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.79775 -47.82822 -39.68731 -38.98420 -38.17991 -36.92153 -36.05811 -35.62990 -32.54006 -32.15379 -31.86687 -28.76221 -27.25035 -24.33179 -24.09550 -22.72685 -22.25552 -20.78951 -19.75391 -18.82743 -18.46093 -18.10138 -18.04503 -17.91283 -17.56160 -17.01036 -16.74273 -16.55443 -15.99046 -15.51889 -15.31571 -14.87088 -14.78588 -14.69573 -14.62986 -14.26484 -14.11504 -14.00083 -13.60028 -13.41847 -13.36790 -13.20927 -13.12361 -13.07341 -12.86814 -12.55077 -12.51314 -12.36878 -12.04810 -11.79031 -11.75642 -11.53198 -11.07099 -10.79959 -10.46191 -9.98692 -9.67140 -8.96499 -6.59425 -0.54686 0.18991 0.66633 1.20158 1.36320 1.43087 2.01858 2.07399 2.42259 2.74300 2.90028 3.30475 3.36735 3.42482 3.47261 3.56408 3.78173 4.12721 4.18331 4.21866 4.35182 4.37368 4.43757 4.47075 4.68431 4.78968 4.83771 4.88539 4.93494 5.07325 5.19099 5.35549 5.44765 5.63745 5.77883 6.01083 6.05978 6.25306 6.59809 6.69148 7.01803 8.12216 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.004732 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.837117 B = 5916.122049 C = 6741.467353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.047 3.953 3 Si 0.959 3.041 4 H -0.245 1.245 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.485 4.485 8 H 0.055 0.945 9 C 0.055 3.945 10 C -0.204 4.204 11 C -0.092 4.092 12 C -0.141 4.141 13 C -0.633 4.633 14 S 2.712 3.288 15 O -0.974 6.974 16 O -1.002 7.002 17 N -1.097 6.097 18 C 0.146 3.854 19 H 0.118 0.882 20 C 0.062 3.938 21 O -0.583 6.583 22 C -0.155 4.155 23 C 0.245 3.755 24 F -0.220 7.220 25 F -0.218 7.218 26 C -0.113 4.113 27 H 0.296 0.704 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.425 0.575 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.397 0.603 35 H 0.139 0.861 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.280 -6.919 -9.987 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.168 4.168 3 Si 0.781 3.219 4 H -0.169 1.169 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.514 4.514 8 H 0.073 0.927 9 C 0.052 3.948 10 C -0.224 4.224 11 C -0.111 4.111 12 C -0.161 4.161 13 C -0.722 4.722 14 S 2.804 3.196 15 O -0.964 6.964 16 O -0.992 6.992 17 N -0.859 5.859 18 C 0.039 3.961 19 H 0.136 0.864 20 C -0.017 4.017 21 O -0.391 6.391 22 C -0.194 4.194 23 C 0.191 3.809 24 F -0.201 7.201 25 F -0.199 7.199 26 C -0.134 4.134 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.262 0.738 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.247 0.753 35 H 0.157 0.843 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.896 -6.539 -9.209 20.323 hybrid contribution -1.057 0.307 0.155 1.112 sum 15.839 -6.232 -9.054 19.279 Atomic orbital electron populations 1.69717 1.09236 1.31669 1.36368 1.26841 0.95372 1.04170 0.90385 0.85585 0.79590 0.76485 0.80191 1.16939 1.20261 1.17816 1.19490 0.94495 0.95829 1.41625 0.92701 1.17910 0.92656 0.92851 0.91378 1.21504 0.97383 1.02608 1.00863 1.21181 0.92456 0.98215 0.99210 1.20671 0.99987 0.96598 0.98871 1.30399 1.09517 1.18423 1.13868 1.01056 0.73233 0.72885 0.72402 1.93510 1.36593 1.79658 1.86610 1.93515 1.80006 1.82649 1.43021 1.55343 1.79073 1.26832 1.24640 1.21186 0.93511 1.01355 0.80047 0.86441 1.22704 0.94416 0.82941 1.01642 1.86419 1.35534 1.23760 1.93429 1.22842 0.90412 1.01977 1.04187 1.22428 0.88608 0.97512 0.72307 1.92943 1.79369 1.80474 1.67345 1.92985 1.86993 1.97414 1.42524 1.20772 0.91806 1.01150 0.99641 0.89377 0.87448 0.83433 0.83020 0.73785 0.88935 0.92545 0.75333 0.84261 0.88178 0.86349 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.84 13.93 21.83 0.30 -45.54 16 2 C 0.05 2.51 5.40 85.26 0.46 2.97 16 3 Si 0.96 41.05 24.52 68.60 1.68 42.74 16 4 H -0.24 -9.45 6.71 99.48 0.67 -8.78 16 5 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.25 -11.19 6.86 99.48 0.68 -10.51 16 7 C -0.49 -27.09 9.57 23.46 0.22 -26.87 16 8 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 9 C 0.06 2.75 5.10 -21.29 -0.11 2.64 16 10 C -0.20 -8.80 7.18 22.73 0.16 -8.64 16 11 C -0.09 -3.19 10.02 22.22 0.22 -2.97 16 12 C -0.14 -4.65 8.90 22.46 0.20 -4.45 16 13 C -0.63 -23.92 5.81 22.22 0.13 -23.80 16 14 S 2.71 89.86 5.65 -56.49 -0.32 89.54 16 15 O -0.97 -32.31 16.48 -128.00 -2.11 -34.42 16 16 O -1.00 -41.23 17.26 -128.00 -2.21 -43.44 16 17 N -1.10 -27.15 4.07 -169.39 -0.69 -27.84 16 18 C 0.15 2.59 2.57 44.99 0.12 2.71 16 19 H 0.12 1.80 7.23 -2.39 -0.02 1.78 16 20 C 0.06 0.84 6.88 71.98 0.50 1.34 16 21 O -0.58 -8.04 12.83 -148.98 -1.91 -9.95 16 22 C -0.16 -2.49 4.83 30.60 0.15 -2.35 16 23 C 0.24 5.81 5.29 71.98 0.38 6.19 16 24 F -0.22 -5.87 17.34 44.97 0.78 -5.09 16 25 F -0.22 -6.96 15.69 44.97 0.71 -6.25 16 26 C -0.11 -5.20 9.26 22.73 0.21 -4.99 16 27 H 0.30 14.33 8.30 -92.71 -0.77 13.56 16 28 H 0.11 4.56 4.73 -2.91 -0.01 4.55 16 29 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 30 H 0.15 3.85 7.60 -2.91 -0.02 3.83 16 31 H 0.43 10.19 8.56 -96.74 -0.83 9.36 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.92 7.59 -2.38 -0.02 0.90 16 34 H 0.40 2.15 9.12 -74.06 -0.68 1.47 16 35 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.10 1.74 7.73 -2.38 -0.02 1.72 16 37 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.10 4.95 7.60 -2.91 -0.02 4.93 16 Total: -1.00 -73.03 338.24 -1.56 -74.59 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.43 Total: 23.88 kcal Atomic # 6 Polarization: -60.85 SS G_CDS: 2.64 Total: -58.21 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -0.39 Total: -73.38 kcal Atomic # 8 Polarization: -81.58 SS G_CDS: -6.23 Total: -87.81 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 1.49 Total: -11.34 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.68 Total: 42.74 kcal Atomic # 16 Polarization: 89.86 SS G_CDS: -0.32 Total: 89.54 kcal Total: -73.03 -1.56 -74.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.003 kcal (2) G-P(sol) polarization free energy of solvation -73.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds