Wall clock time and date at job start Tue Mar 31 2020 18:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 119.99798 * 2 1 4 4 H 1.48498 * 109.46982 * 275.40724 * 3 2 1 5 5 H 1.48499 * 109.47426 * 35.40858 * 3 2 1 6 6 H 1.48499 * 109.47083 * 155.41161 * 3 2 1 7 7 C 1.39942 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00028 * 341.73035 * 7 2 1 9 9 C 1.41393 * 120.00421 * 161.72835 * 7 2 1 10 10 C 1.40740 * 120.24101 * 330.22634 * 9 7 2 11 11 C 1.37595 * 119.74407 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24768 * 359.72595 * 11 10 9 13 13 C 1.38607 * 120.49991 * 0.54818 * 12 11 10 14 14 S 1.76206 * 119.87684 * 179.72357 * 13 12 11 15 15 O 1.42097 * 106.40343 * 156.18291 * 14 13 12 16 16 O 1.42107 * 106.39837 * 23.26795 * 14 13 12 17 17 N 1.65591 * 107.21946 * 269.73083 * 14 13 12 18 18 C 1.38844 * 120.00618 * 64.99589 * 17 14 13 19 19 N 1.30639 * 126.37881 * 15.02489 * 18 17 14 20 20 O 1.21294 * 110.12146 * 179.97438 * 19 18 17 21 21 C 1.33658 * 109.98051 * 0.02562 * 20 19 18 22 22 C 1.50696 * 126.45695 * 179.97438 * 21 20 19 23 23 C 1.52999 * 117.50120 * 300.01495 * 22 21 20 24 24 C 1.53000 * 60.03081 * 107.50912 * 23 22 21 25 25 N 1.31041 * 107.07648 * 0.23695 * 21 20 19 26 26 C 1.37633 * 120.25277 * 359.45057 * 13 12 11 27 27 H 0.96998 * 120.00512 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.12611 * 359.97438 * 10 9 7 29 29 H 1.07993 * 119.87852 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.74695 * 180.29369 * 12 11 10 31 31 H 0.97003 * 119.99941 * 244.99700 * 17 14 13 32 32 H 1.09005 * 115.55798 * 154.33636 * 22 21 20 33 33 H 1.09009 * 117.49565 * 0.02562 * 23 22 21 34 34 H 1.08999 * 117.50609 * 215.01055 * 23 22 21 35 35 H 1.08999 * 117.49962 * 107.48021 * 24 23 22 36 36 H 1.09002 * 117.49926 * 252.47761 * 24 23 22 37 37 H 1.08004 * 120.13619 * 180.24983 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3753 2.1124 -1.3938 5 1 1.5014 2.6170 0.8112 6 1 3.5922 1.4099 0.5826 7 6 2.0079 -1.2119 0.0005 8 1 1.5088 -2.1236 0.2942 9 6 3.3684 -1.2430 -0.3833 10 6 3.8635 -0.3115 -1.3150 11 6 5.1891 -0.3514 -1.6817 12 6 6.0374 -1.3010 -1.1327 13 6 5.5594 -2.2268 -0.2186 14 16 6.6503 -3.4309 0.4632 15 8 6.0813 -3.8322 1.7019 16 8 7.9616 -2.8955 0.3475 17 7 6.5975 -4.7569 -0.5272 18 6 7.0608 -4.6671 -1.8330 19 7 7.8017 -3.7119 -2.3283 20 8 8.0349 -3.9290 -3.4987 21 6 7.4519 -5.0710 -3.8763 22 6 7.5011 -5.6901 -5.2494 23 6 6.9408 -4.8712 -6.4140 24 6 8.4520 -5.0653 -6.2733 25 7 6.8250 -5.5476 -2.8290 26 6 4.2372 -2.2056 0.1629 27 1 -0.4851 0.8400 -0.0004 28 1 3.2053 0.4312 -1.7411 29 1 5.5714 0.3626 -2.3961 30 1 7.0775 -1.3219 -1.4228 31 1 6.2430 -5.5965 -0.1951 32 1 7.3652 -6.7711 -5.2829 33 1 6.5371 -3.8844 -6.1872 34 1 6.4361 -5.4134 -7.2137 35 1 8.9413 -5.7354 -6.9801 36 1 9.0421 -4.2062 -5.9543 37 1 3.8676 -2.9253 0.8783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619569705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:28 Heat of formation + Delta-G solvation = 31.654414 kcal Electronic energy + Delta-G solvation = -26245.840769 eV Core-core repulsion = 22311.846355 eV Total energy + Delta-G solvation = -3933.994414 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.077 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.73642 -39.80852 -38.72105 -38.36627 -38.08191 -37.28051 -35.71479 -35.30555 -32.66457 -32.40437 -32.03457 -27.32981 -26.20472 -25.30187 -24.26917 -23.23486 -22.84038 -22.75049 -20.80960 -19.81910 -19.77076 -19.32469 -18.68348 -18.14728 -17.78323 -17.20319 -17.04856 -16.85886 -16.49779 -15.72887 -15.43906 -14.98184 -14.74978 -14.37820 -14.19285 -14.12915 -13.70869 -13.67764 -13.51539 -13.45102 -13.34085 -13.26452 -12.97700 -12.83186 -12.62531 -12.35815 -12.25287 -12.15150 -11.89033 -11.67158 -11.48151 -11.37528 -11.11837 -10.41964 -10.14936 -9.78680 -9.01977 -6.65857 -1.10872 0.00024 0.02120 0.55653 0.99261 1.17869 1.26106 1.32974 1.40819 1.71728 2.01313 2.21805 2.36954 2.56056 2.73665 2.95229 3.12515 3.22129 3.74242 3.95555 3.98779 4.06841 4.20459 4.24906 4.33574 4.48049 4.64884 4.71256 4.84337 4.87674 4.97029 4.98495 5.14988 5.20575 5.28318 5.33171 5.37279 5.52620 5.66723 5.88810 6.15919 6.48640 6.62589 7.01892 8.05905 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.003973 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.712743 B = 7046.299233 C = 8146.399640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.052 3.948 3 Si 0.953 3.047 4 H -0.247 1.247 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.481 4.481 8 H 0.065 0.935 9 C 0.055 3.945 10 C -0.196 4.196 11 C -0.096 4.096 12 C -0.136 4.136 13 C -0.635 4.635 14 S 2.712 3.288 15 O -0.958 6.958 16 O -0.949 6.949 17 N -0.991 5.991 18 C 0.399 3.601 19 N -0.410 5.410 20 O 0.087 5.913 21 C 0.237 3.763 22 C -0.100 4.100 23 C -0.149 4.149 24 C -0.139 4.139 25 N -0.502 5.502 26 C -0.122 4.122 27 H 0.298 0.702 28 H 0.114 0.886 29 H 0.144 0.856 30 H 0.135 0.865 31 H 0.453 0.547 32 H 0.171 0.829 33 H 0.091 0.909 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.370 -8.774 -14.026 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.165 4.165 3 Si 0.776 3.224 4 H -0.171 1.171 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.510 4.510 8 H 0.083 0.917 9 C 0.052 3.948 10 C -0.216 4.216 11 C -0.115 4.115 12 C -0.157 4.157 13 C -0.726 4.726 14 S 2.805 3.195 15 O -0.948 6.948 16 O -0.938 6.938 17 N -0.750 5.750 18 C 0.035 3.965 19 N -0.128 5.128 20 O 0.032 5.968 21 C 0.018 3.982 22 C -0.120 4.120 23 C -0.187 4.187 24 C -0.177 4.177 25 N -0.240 5.240 26 C -0.143 4.143 27 H 0.109 0.891 28 H 0.132 0.868 29 H 0.162 0.838 30 H 0.153 0.847 31 H 0.294 0.706 32 H 0.189 0.811 33 H 0.110 0.890 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.122 0.878 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.663 -8.111 -12.538 20.928 hybrid contribution -1.194 0.334 0.293 1.274 sum 13.469 -7.776 -12.244 19.794 Atomic orbital electron populations 1.69685 1.09044 1.31884 1.35450 1.26774 0.95375 1.03980 0.90329 0.85665 0.79685 0.76832 0.80257 1.17130 1.19678 1.18048 1.19481 0.93957 0.96219 1.41297 0.91713 1.17928 0.92953 0.92652 0.91276 1.21542 0.96822 1.02618 1.00613 1.21148 0.92871 0.98219 0.99217 1.20582 0.99712 0.96731 0.98638 1.30073 1.09793 1.17969 1.14733 1.01436 0.73732 0.72242 0.72081 1.93592 1.79793 1.82188 1.39246 1.93575 1.36700 1.77891 1.85682 1.52562 1.74494 1.31008 1.16895 1.21620 0.95428 0.90630 0.88774 1.75109 1.20762 1.23105 0.93842 1.85255 1.56405 1.36834 1.18312 1.28359 0.88268 0.83719 0.97881 1.20772 1.12474 1.00430 0.78319 1.23338 0.97732 1.00875 0.96769 1.23368 0.92826 1.03205 0.98261 1.71839 1.24923 1.28678 0.98542 1.20947 0.91155 1.02121 1.00062 0.89118 0.86833 0.83820 0.84725 0.70553 0.81134 0.89039 0.84374 0.83951 0.87764 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.28 13.93 21.83 0.30 -43.98 16 2 C 0.05 2.70 5.40 85.26 0.46 3.16 16 3 Si 0.95 40.94 24.52 68.60 1.68 42.62 16 4 H -0.25 -9.68 6.71 99.48 0.67 -9.01 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.26 -11.49 6.86 99.48 0.68 -10.81 16 7 C -0.48 -26.45 9.57 23.46 0.22 -26.23 16 8 H 0.06 3.81 8.06 -2.91 -0.02 3.78 16 9 C 0.06 2.82 5.10 -21.29 -0.11 2.71 16 10 C -0.20 -9.03 7.18 22.73 0.16 -8.86 16 11 C -0.10 -3.88 10.02 22.22 0.22 -3.65 16 12 C -0.14 -5.57 9.38 22.46 0.21 -5.35 16 13 C -0.64 -27.01 5.89 22.21 0.13 -26.88 16 14 S 2.71 100.36 5.59 -56.49 -0.32 100.04 16 15 O -0.96 -38.10 17.27 -128.00 -2.21 -40.31 16 16 O -0.95 -37.81 16.23 -128.00 -2.08 -39.88 16 17 N -0.99 -30.63 5.86 -64.99 -0.38 -31.01 16 18 C 0.40 12.83 8.75 260.92 2.28 15.12 16 19 N -0.41 -13.50 10.52 -66.66 -0.70 -14.20 16 20 O 0.09 2.30 11.06 74.71 0.83 3.13 16 21 C 0.24 5.36 7.96 88.36 0.70 6.06 16 22 C -0.10 -1.19 6.33 -11.52 -0.07 -1.26 16 23 C -0.15 -1.30 10.23 30.59 0.31 -0.99 16 24 C -0.14 -0.93 10.18 30.62 0.31 -0.62 16 25 N -0.50 -14.15 11.57 -311.41 -3.60 -17.75 16 26 C -0.12 -5.78 9.26 22.73 0.21 -5.57 16 27 H 0.30 14.07 8.30 -92.71 -0.77 13.30 16 28 H 0.11 5.02 4.74 -2.91 -0.01 5.01 16 29 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 30 H 0.13 5.12 7.20 -2.91 -0.02 5.10 16 31 H 0.45 11.04 8.95 -96.75 -0.87 10.18 16 32 H 0.17 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.14 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.10 0.86 8.00 -2.39 -0.02 0.84 16 37 H 0.12 5.57 7.60 -2.91 -0.02 5.55 16 Total: -1.00 -71.03 335.97 -1.20 -72.23 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.22 Total: 21.47 kcal Atomic # 6 Polarization: -57.41 SS G_CDS: 5.05 Total: -52.36 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -4.38 Total: -106.95 kcal Atomic # 8 Polarization: -73.60 SS G_CDS: -3.46 Total: -77.06 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.68 Total: 42.62 kcal Atomic # 16 Polarization: 100.36 SS G_CDS: -0.32 Total: 100.04 kcal Total: -71.03 -1.20 -72.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619569705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.888 kcal (2) G-P(sol) polarization free energy of solvation -71.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds